Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G134400 Prunus persica HOM05D003818 ORTHO05D004541 9.2e-75 283.5 145 100.0
FAN27G0424 Fragaria x ananassa HOM05D003818 ORTHO05D004541 8.3e-68 260.4 145 90.3
FvH4_2g14180 Fragaria vesca HOM05D003818 ORTHO05D004541 1.1e-67 260.0 145 90.3
FAN24G1752 Fragaria x ananassa HOM05D003818 ORTHO05D004541 1.1e-67 260.0 145 90.3
FAN15G1651 Fragaria x ananassa HOM05D003818 ORTHO05D004541 1.4e-67 259.6 145 90.3
MD17G1234800 Malus domestica HOM05D003818 ORTHO05D004541 1.4e-67 259.6 146 92.5
RcHm_v2.0_Chr6g0276321 Rosa chinensis HOM05D003818 ORTHO05D004541 2.0e-66 255.8 145 91.0
Manes.06G144400 Manihot esculenta HOM05D003818 ORTHO05D004541 8.6e-65 250.4 145 86.2
Potri.015G138800 Populus trichocarpa HOM05D003818 ORTHO05D004541 4.3e-64 248.1 145 86.2
Sabra15G0149800 Salix brachista HOM05D003818 ORTHO05D004541 4.3e-64 248.1 145 86.2
CsaV3_3G016860 Cucumis sativus L. HOM05D003818 ORTHO05D004541 1.2e-63 246.5 143 86.0
MD12G1011200 Malus domestica HOM05D003818 ORTHO05D004541 1.2e-63 246.5 146 84.9
Manes.14G028600 Manihot esculenta HOM05D003818 ORTHO05D004541 2.8e-63 245.4 145 84.1
Sed0011620 Sechium edule HOM05D003818 ORTHO05D004541 6.2e-63 244.2 143 86.0
Potri.012G136900 Populus trichocarpa HOM05D003818 ORTHO05D004541 8.1e-63 243.8 145 84.8
VMungo0720G0479 Vigna mungo HOM05D001872 ORTHO05D001859 8.1e-63 243.8 141 85.8
Cpa.g.sc370.10 Carica papaya HOM05D003818 ORTHO05D004541 3.1e-62 241.9 145 84.1
Sed0012084 Sechium edule HOM05D003818 ORTHO05D004541 5.2e-62 241.1 143 85.3
CiPaw.04G066900 Carya illinoinensis HOM05D003818 ORTHO05D004541 6.8e-62 240.7 145 85.5
Phvul.007G009900 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 8.9e-62 240.4 142 85.2
arahy.Tifrunner.gnm1.ann1.7N83Z4 Arachis hypogaea HOM05D003818 ORTHO05D004541 1.5e-61 239.6 143 83.2
arahy.Tifrunner.gnm1.ann1.Y3E72Q Arachis hypogaea HOM05D003818 ORTHO05D004541 1.5e-61 239.6 143 83.2
Glyma.10G238600 Glycine max HOM05D003818 ORTHO05D004541 1.5e-61 239.6 145 84.1
Eucgr.H00421 Eucalyptus grandis HOM05D003818 ORTHO05D004541 2.6e-61 238.8 145 84.8
Psat3g070640 Pisum sativum HOM05D003818 ORTHO05D004541 2.6e-61 238.8 146 82.9
PGR102G2559 Punica granatum HOM05D003818 ORTHO05D004541 4.4e-61 238.0 145 82.1
TWI23G0179 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 4.4e-61 238.0 145 82.1
TPR.G3844 Trifolium pratense HOM05D003818 ORTHO05D004541 5.8e-61 237.7 145 83.4
Glyma.20G155900 Glycine max HOM05D003818 ORTHO05D004541 9.9e-61 236.9 145 82.8
TWI39G1222 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 9.9e-61 236.9 145 82.8
TAR374G0305 Trochodendron aralioides HOM05D003818 ORTHO05D004541 9.9e-61 236.9 144 84.0
QL06p049138 Quercus lobata HOM05D003818 ORTHO05D004541 1.3e-60 236.5 144 83.3
LjContig00564g0007738 Lotus japonicus HOM05D003818 ORTHO05D004541 2.2e-60 235.7 145 82.1
Medtr7g092450 Medicago truncatula HOM05D003818 ORTHO05D004541 2.2e-60 235.7 146 82.2
Medtr0019s0160 Medicago truncatula HOM05D003818 ORTHO05D004541 2.9e-60 235.3 145 79.3
Nn3g21139 Nelumbo nucifera HOM05D003818 ORTHO05D004541 2.9e-60 235.3 146 82.2
GSVIVG01020800001 Vitis vinifera HOM05D003818 ORTHO05D004541 4.9e-60 234.6 145 84.1
Lalb_Chr21g0304961 Lupinus albus HOM05D003818 ORTHO05D004541 8.3e-60 233.8 145 80.7
TAR375G1045 Trochodendron aralioides HOM05D003818 ORTHO05D004541 8.3e-60 233.8 142 83.1
Sabra12G0102700 Salix brachista HOM05D003818 ORTHO05D004541 1.4e-59 233.0 158 76.6
Duzib068G1062 Durio zibethinus HOM05D003818 ORTHO05D004541 2.4e-59 232.3 146 82.2
Gohir.A11G009700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 2.4e-59 232.3 146 82.9
Haze_13747 Corylus avellana HOM05D003818 ORTHO05D004541 4.1e-59 231.5 135 85.9
CARHR264880 Cardamine hirsuta HOM05D003818 ORTHO05D004541 5.4e-59 231.1 146 81.5
Lj2g0002682 Lotus japonicus HOM05D003818 ORTHO05D004541 5.4e-59 231.1 146 81.5
GSVIVG01010613001 Vitis vinifera HOM05D003818 ORTHO05D004541 5.4e-59 231.1 145 82.1
AT5G51940 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 7.1e-59 230.7 146 80.8
Gohir.D11G009000 Gossypium hirsutum HOM05D003818 ORTHO05D004541 9.2e-59 230.3 146 82.2
Gorai.007G010600 Gossypium raimondii HOM05D003818 ORTHO05D004541 9.2e-59 230.3 146 82.2
Thhalv10027983m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 1.2e-58 229.9 146 80.8
VMungo0720G0599 Vigna mungo HOM05D003818 ORTHO05D004541 1.2e-58 229.9 145 82.1
AL8G26260 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 1.6e-58 229.6 146 80.8
BcaB06g27416 Brassica carinata HOM05D003818 ORTHO05D004541 1.6e-58 229.6 146 80.1
Carub.0003s2626 Capsella rubella HOM05D003818 ORTHO05D004541 1.6e-58 229.6 146 80.8
Cfa020017 Carpinus fangiana HOM05D003818 ORTHO05D004541 2.7e-58 228.8 133 87.2
Phvul.007G066800 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 2.7e-58 228.8 145 80.7
THA.LOC104818368 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 3.5e-58 228.4 146 80.1
AL3G42280 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 4.6e-58 228.0 146 80.1
Carub.0008s1203 Capsella rubella HOM05D003818 ORTHO05D004541 4.6e-58 228.0 146 80.1
A04p12880 Brassica napus HOM05D003818 ORTHO05D004541 6.0e-58 227.6 146 79.5
C04p46580 Brassica napus HOM05D003818 ORTHO05D004541 7.8e-58 227.3 146 79.5
BraA04t16951Z Brassica rapa HOM05D003818 ORTHO05D004541 7.8e-58 227.3 146 79.5
Cfa008286 Carpinus fangiana HOM05D003818 ORTHO05D004541 1.0e-57 226.9 133 85.7
Os03g0586600 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 1.7e-57 226.1 147 82.3
Aa31LG9G1570 Aethionema arabicum HOM05D003818 ORTHO05D004541 2.3e-57 225.7 146 78.1
BolC4t26244H Brassica oleracea HOM05D003818 ORTHO05D004541 2.3e-57 225.7 146 78.8
BcaC04g23878 Brassica carinata HOM05D003818 ORTHO05D004541 5.1e-57 224.6 146 78.8
A09p03630 Brassica napus HOM05D003818 ORTHO05D004541 5.1e-57 224.6 146 78.8
C09p03860 Brassica napus HOM05D003818 ORTHO05D004541 5.1e-57 224.6 146 78.8
BolC9t53311H Brassica oleracea HOM05D003818 ORTHO05D004541 5.1e-57 224.6 146 78.8
BraA09t36001Z Brassica rapa HOM05D003818 ORTHO05D004541 5.1e-57 224.6 146 78.8
MELO3C006881.2 Cucumis melo HOM05D003818 ORTHO05D004541 5.1e-57 224.6 131 86.3
Sp7g01990 Schrenkiella parvula HOM05D003818 ORTHO05D004541 6.6e-57 224.2 146 78.8
BcaB04g19460 Brassica carinata HOM05D003818 ORTHO05D004541 1.5e-56 223.0 146 78.1
Migut.K00399 Erythranthe guttata HOM05D003818 ORTHO05D004541 1.5e-56 223.0 147 80.3
Thhalv10005087m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 1.9e-56 222.6 146 78.8
ATR0757G129 Amborella trichopoda HOM05D003818 ORTHO05D004541 2.5e-56 222.2 146 80.1
AT2G04630 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 4.3e-56 221.5 146 78.8
ClCG05G016800 Citrullus lanatus HOM05D002695 ORTHO05D002964 4.3e-56 221.5 131 85.5
THA.LOC104819386 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 4.3e-56 221.5 147 78.2
Thecc.03G171400 Theobroma cacao HOM05D003818 ORTHO05D004541 5.6e-56 221.1 145 79.3
Sp2g17150 Schrenkiella parvula HOM05D003818 ORTHO05D004541 9.5e-56 220.3 146 77.4
Zm00001eb219520 Zea mays HOM05D003818 ORTHO05D004541 1.6e-55 219.5 147 78.9
Dinv28474 Davidia involucrata HOM05D003818 ORTHO05D004541 2.1e-55 219.2 146 78.1
Lalb_Chr06g0161031 Lupinus albus HOM05D003818 ORTHO05D004541 2.1e-55 219.2 145 77.2
SGA_v2.0_scaffold59G20747 Striga asiatica HOM05D003818 ORTHO05D004541 2.1e-55 219.2 146 79.5
Atru.chr1.512 Acer truncatum HOM05D003818 ORTHO05D004541 2.8e-55 218.8 146 78.8
MSTRG.27132 Avicennia marina HOM05D003818 ORTHO05D004541 4.7e-55 218.0 146 77.4
AUR62004298 Chenopodium quinoa HOM05D003818 ORTHO05D004541 6.2e-55 217.6 145 76.6
Duzib084G1211 Durio zibethinus HOM05D003818 ORTHO05D004541 6.2e-55 217.6 146 79.5
MBI04_g00300_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 6.2e-55 217.6 147 78.9
Solyc09g010500.3 Solanum lycopersicum HOM05D003818 ORTHO05D004541 6.2e-55 217.6 147 79.6
Sopen09g005230 Solanum pennellii HOM05D003818 ORTHO05D004541 6.2e-55 217.6 147 79.6
AUR62022747 Chenopodium quinoa HOM05D003818 ORTHO05D004541 1.1e-54 216.9 145 76.6
EL10Ac1g00990 Beta vulgaris HOM05D003818 ORTHO05D004541 1.8e-54 216.1 145 75.9
Oeu061636.1 Olea europaea HOM05D003818 ORTHO05D004541 2.4e-54 215.7 146 77.4
PGSC0003DMG400008922 Solanum tuberosum HOM05D003818 ORTHO05D004541 2.4e-54 215.7 147 78.9
Atru.chr3.2134 Acer truncatum HOM05D003818 ORTHO05D004541 3.1e-54 215.3 145 78.6
ClCG05G007860 Citrullus lanatus HOM05D003818 ORTHO05D004541 3.1e-54 215.3 202 60.9
HanXRQChr16g0532841 Helianthus annuus HOM05D003818 ORTHO05D004541 6.8e-54 214.2 147 78.2
Os07g0463100 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 8.9e-54 213.8 147 77.6
Dinv35185 Davidia involucrata HOM05D003818 ORTHO05D004541 2.0e-53 212.6 146 76.7
Hund27319 Selenicereus undatus HOM05D003818 ORTHO05D004541 4.4e-53 211.5 145 75.9
Cc02_g03330 Coffea canephora HOM05D003818 ORTHO05D004541 5.8e-53 211.1 145 75.9
CsaV3_3G046320 Cucumis sativus L. HOM05D003818 ORTHO05D004541 5.8e-53 211.1 143 79.0
Rhsim05G0017100 Rhododendron simsii HOM05D003818 ORTHO05D004541 5.8e-53 211.1 146 77.4
Haze_20202 Corylus avellana HOM05D003818 ORTHO05D004541 7.6e-53 210.7 124 85.5
Rhsim03G0177700 Rhododendron simsii HOM05D003818 ORTHO05D004541 7.6e-53 210.7 146 77.4
MBI07_g30196_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 9.9e-53 210.3 147 77.6
HanXRQChr04g0108631 Helianthus annuus HOM05D003818 ORTHO05D004541 1.7e-52 209.5 148 77.0
Lsat_1_v5_gn_1_9221 Lactuca sativa HOM05D003818 ORTHO05D004541 1.7e-52 209.5 146 74.7
Ciclev10006171m.g Citrus clementina HOM05D003818 ORTHO05D004541 3.8e-52 208.4 145 75.9
Actinidia31809 Actinidia chinensis HOM05D003818 ORTHO05D004541 6.4e-52 207.6 143 76.2
Gohir.A08G082700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 1.1e-51 206.8 146 76.7
Gohir.D08G112900 Gossypium hirsutum HOM05D003818 ORTHO05D004541 1.1e-51 206.8 146 76.7
Gorai.004G121300 Gossypium raimondii HOM05D003818 ORTHO05D004541 1.1e-51 206.8 146 76.7
COL.COLO4_14270 Corchorus olitorius HOM05D003818 ORTHO05D004541 7.1e-51 204.1 129 80.6
CSS0048006 Camellia sinensis var. sinensis HOM05D003818 ORTHO05D004541 1.2e-50 203.4 135 77.0
Hma1.2p1_0099F.1_g048510 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 1.6e-50 203.0 148 74.3
SEGI_10630 Sequoiadendron giganteum HOM05D003818 ORTHO05D004541 1.6e-50 203.0 152 73.7
MSTRG.26327 Avicennia marina HOM05D003818 ORTHO05D004541 2.7e-50 202.2 145 75.9
Nitab4.5_0017332g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 3.5e-50 201.8 151 72.2
SGA_v2.0_scaffold50G18457 Striga asiatica HOM05D003818 ORTHO05D004541 7.8e-50 200.7 182 63.2
ECA247G1139 Erigeron canadensis HOM05D003818 ORTHO05D004541 1.7e-49 199.5 143 74.1
PSO478G0785 Papaver somniferum HOM05D003818 ORTHO05D004541 1.7e-49 199.5 145 74.5
PSO675G1382 Papaver somniferum HOM05D003818 ORTHO05D004541 1.7e-49 199.5 145 74.5
PSO782G3144 Papaver somniferum HOM05D003818 ORTHO05D004541 1.7e-49 199.5 145 74.5
PSO541G1664 Papaver somniferum HOM05D003818 ORTHO05D004541 2.3e-49 199.1 144 74.3
DCAR_018174 Daucus carota HOM05D003818 ORTHO05D004541 5.1e-49 198.0 147 72.1
Aqoxy7G00432 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 2.5e-48 195.7 144 72.2
CANSAT56G1911 Cannabis sativa HOM05D003818 ORTHO05D004541 7.3e-48 194.1 121 85.1
Hma1.2p1_0270F.1_g108370 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 2.8e-47 192.2 133 75.2
Pp3c16_17050 Physcomitrium patens HOM05D003818 ORTHO05D004541 8.1e-47 190.7 147 69.4
unitig_0.g2487 Utricularia gibba HOM05D003818 ORTHO05D004541 3.1e-46 188.7 142 71.1
CDE06G2832 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 6.9e-46 187.6 145 69.7
vmacro16312 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 3.4e-45 185.3 169 61.5
Peaxi162Scf00039g01318 Petunia axillaris HOM05D003818 ORTHO05D004541 4.4e-45 184.9 146 70.5
Oeu030115.1 Olea europaea HOM05D003818 ORTHO05D004541 1.3e-44 183.3 145 69.7
Lsat_1_v5_gn_3_64081 Lactuca sativa HOM05D003818 ORTHO05D004541 2.2e-44 182.6 144 68.8
AagrBONN_evm.TU.Sc2ySwM_344.4289 Anthoceros agrestis HOM05D003818 ORTHO05D004541 8.4e-44 180.6 145 66.2
CDE02G0031 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 1.1e-43 180.3 145 70.3
DCAR_009510 Daucus carota HOM05D000059 ORTHO05D000128 1.9e-43 179.5 99 86.9
vmacro06714 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 4.2e-43 178.3 133 72.2
Peaxi162Scf01172g00037 Petunia axillaris HOM05D003818 ORTHO05D004541 3.5e-42 175.3 140 70.0
Aqoxy6G01685 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 6.0e-42 174.5 137 74.5
Mapoly0001s0266 Marchantia polymorpha HOM05D003818 ORTHO05D004541 3.0e-41 172.2 145 66.9
Gohir.D12G260866 Gossypium hirsutum HOM05D003818 ORTHO05D004541 3.9e-41 171.8 133 69.9
Nitab4.5_0006124g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 8.7e-41 170.6 122 76.2
TAR375G0179 Trochodendron aralioides HOM05D003818 ORTHO05D004541 1.1e-40 170.2 116 77.6
SMO200G0145 Selaginella moellendorffii HOM05D003818 ORTHO05D004541 1.5e-40 169.9 95 83.2
SalBow5G5531 Salvia bowleyana HOM05D003818 ORTHO05D004541 2.5e-40 169.1 124 74.2
Zm00001eb049200 Zea mays HOM05D003818 ORTHO05D004541 2.5e-40 169.1 123 75.6
Sc23g0003230 Simmondsia chinensis HOM05D003818 ORTHO05D004541 3.3e-40 168.7 133 69.9
MD09G1242800 Malus domestica HOM05D003818 ORTHO05D004541 4.3e-40 168.3 91 93.4
Prupe.7G013200 Prunus persica HOM05D003818 ORTHO05D004541 6.9e-38 161.0 99 85.9
CAN.G97.6 Capsicum annuum HOM05D003818 ORTHO05D004541 1.5e-37 159.8 113 77.0
Haze_09431 Corylus avellana HOM05D003818 ORTHO05D004541 4.5e-37 158.3 133 66.2
CBR_g31915 Chara braunii HOM05D003818 ORTHO05D004541 1.3e-36 156.8 141 61.7
Oeu021768.1 Olea europaea HOM05D003818 ORTHO05D004541 4.2e-35 151.8 123 69.9
MELO3C003707.2 Cucumis melo HOM05D003818 ORTHO05D004541 9.3e-35 150.6 143 59.4
arahy.Tifrunner.gnm1.ann1.36XVJD Arachis hypogaea HOM05D003818 ORTHO05D004541 8.7e-33 144.1 107 69.2
VMungo0647G2358 Vigna mungo HOM05D003818 ORTHO05D004541 1.3e-31 140.2 104 76.0
Cre01.g002200 Chlamydomonas reinhardtii HOM05D003818 ORTHO05D004541 2.1e-31 139.4 126 62.7
MCO13G124 Micromonas commoda HOM05D003818 ORTHO05D004541 6.2e-31 137.9 82 78.0
PRCOL_00007084 Prasinoderma coloniale HOM05D003818 ORTHO05D004541 4.5e-29 131.7 135 59.3
Nitab4.5_0002113g0140 Nicotiana tabacum HOM05D003818 ORTHO05D004541 1.4e-27 126.7 106 69.8
Oeu021769.1 Olea europaea HOM05D003818 ORTHO05D004541 5.5e-27 124.8 100 70.0
Nitab4.5_0002077g0060 Nicotiana tabacum HOM05D003818 ORTHO05D004541 1.6e-26 123.2 146 53.4
SalBow8G3306 Salvia bowleyana HOM05D003818 ORTHO05D004541 1.6e-26 123.2 119 60.5
SalBow8G5018 Salvia bowleyana HOM05D003818 ORTHO05D004541 1.6e-26 123.2 119 60.5
arahy.Tifrunner.gnm1.ann1.28837M Arachis hypogaea HOM05D003818 ORTHO05D004541 2.3e-25 119.4 132 52.3
arahy.Tifrunner.gnm1.ann1.99YBLU Arachis hypogaea HOM05D003818 ORTHO05D004541 3.9e-25 118.6 132 53.8
Haze_26305 Corylus avellana HOM05D003818 ORTHO05D004541 3.9e-25 118.6 69 79.7
TAR374G0228 Trochodendron aralioides HOM05D003818 ORTHO05D004541 2.5e-24 115.9 64 84.4
arahy.Tifrunner.gnm1.ann1.TF2L72 Arachis hypogaea HOM05D003818 ORTHO05D004541 1.1e-22 110.5 73 75.3
arahy.Tifrunner.gnm1.ann1.VWKV4W Arachis hypogaea HOM05D003818 ORTHO05D004541 2.0e-21 106.3 78 71.8
arahy.Tifrunner.gnm1.ann1.FSRU1U Arachis hypogaea HOM05D003818 ORTHO05D004541 2.6e-21 105.9 77 72.7
AagrBONN_evm.TU.Sc2ySwM_344.4292 Anthoceros agrestis HOM05D003818 ORTHO05D004541 4.6e-18 95.1 120 50.8
Actinidia03108 Actinidia chinensis HOM05D003818 ORTHO05D054983 1.0e-17 94.0 47 87.2
PGR142G2678 Punica granatum HOM05D003818 ORTHO05D004541 1.3e-17 93.6 82 65.9
Os08g0426000 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D295196 1.8e-14 83.2 77 66.2
arahy.Tifrunner.gnm1.ann1.VXTW3V Arachis hypogaea HOM05D003818 ORTHO05D013217 1.5e-08 63.5 35 88.6


User provided reference genes

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