Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G132600 Prunus persica HOM05D007469 ORTHO05D003360 1.5e-128 463.4 344 100.0
FvH4_5g31250 Fragaria vesca HOM05D007469 ORTHO05D003360 5.4e-73 278.9 346 76.3
RcHm_v2.0_Chr7g0226491 Rosa chinensis HOM05D007469 ORTHO05D003360 5.9e-72 275.4 348 75.0
MD05G1026500 Malus domestica HOM05D007469 ORTHO05D003360 2.3e-52 210.3 351 67.8
Dinv35031 Davidia involucrata HOM05D000028 ORTHO05D000390 2.5e-46 190.3 175 61.7
Haze_14632 Corylus avellana HOM05D007469 ORTHO05D003360 2.1e-45 187.2 296 72.0
CiPaw.03G035300 Carya illinoinensis HOM05D007469 ORTHO05D003360 3.1e-44 183.3 263 75.7
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 5.8e-43 179.1 300 66.0
Sabra16G0184600 Salix brachista HOM05D007469 ORTHO05D003360 2.2e-42 177.2 292 67.5
Manes.15G180348 Manihot esculenta HOM05D007469 ORTHO05D003360 4.9e-42 176.0 301 63.5
Atru.chr8.2427 Acer truncatum HOM05D007469 ORTHO05D003360 1.1e-41 174.9 303 66.0
Cfa007462 Carpinus fangiana HOM05D007469 ORTHO05D003360 2.4e-41 173.7 296 69.3
QL02p077481 Quercus lobata HOM05D007469 ORTHO05D003360 3.2e-41 173.3 297 68.4
Dinv33523 Davidia involucrata HOM05D007469 ORTHO05D003360 1.3e-39 167.9 291 69.8
Thecc.04G004300 Theobroma cacao HOM05D007469 ORTHO05D003360 1.3e-39 167.9 276 70.7
MELO3C021518.2 Cucumis melo HOM05D007469 ORTHO05D003360 3.3e-38 163.3 308 62.3
Gohir.D07G225500 Gossypium hirsutum HOM05D007469 ORTHO05D003360 5.2e-36 156.0 269 70.6
Hund20037 Selenicereus undatus HOM05D007469 ORTHO05D009499 5.2e-36 156.0 166 53.0
CsaV3_5G037380 Cucumis sativus L. HOM05D007469 ORTHO05D003360 1.2e-35 154.8 296 64.5
CANSAT64G0136 Cannabis sativa HOM05D007469 ORTHO05D003360 2.0e-35 154.1 300 62.7
CANSAT64G2834 Cannabis sativa HOM05D007469 ORTHO05D003360 2.0e-35 154.1 300 62.7
EL10Ac8g18402 Beta vulgaris HOM05D007469 ORTHO05D003360 5.8e-35 152.5 185 49.7
Gorai.001G259900 Gossypium raimondii HOM05D007469 ORTHO05D003360 1.3e-34 151.4 270 70.4
Ah.10g030590 Amaranthus hybridus HOM05D007469 ORTHO05D003360 2.2e-34 150.6 288 68.1
Duzib264G1016 Durio zibethinus HOM05D007469 ORTHO05D003360 2.9e-34 150.2 289 65.1
Oeu047333.1 Olea europaea HOM05D007469 ORTHO05D003360 1.4e-33 147.9 261 62.8
Cc02_g31090 Coffea canephora HOM05D007469 ORTHO05D003360 2.4e-33 147.1 278 67.3
Gohir.A07G218400 Gossypium hirsutum HOM05D007469 ORTHO05D003360 2.4e-33 147.1 287 66.2
Hma1.2p1_0697F.1_g204960 Hydrangea macrophylla HOM05D007469 ORTHO05D003360 5.4e-33 146.0 300 62.0
Sed0015996 Sechium edule HOM05D007469 ORTHO05D003360 5.4e-33 146.0 299 64.5
TAR371G0800 Trochodendron aralioides HOM05D007469 ORTHO05D003360 1.6e-32 144.4 308 62.7
GSVIVG01032525001 Vitis vinifera HOM05D007469 ORTHO05D003360 1.6e-32 144.4 235 75.3
Ciclev10013529m.g Citrus clementina HOM05D007469 ORTHO05D003360 4.6e-32 142.9 307 57.0
THA.LOC104805414 Tarenaya hassleriana HOM05D007469 ORTHO05D003360 4.6e-32 142.9 259 66.0
PGR083G2689 Punica granatum HOM05D007469 ORTHO05D003360 6.0e-32 142.5 144 56.2
Eucgr.J02176 Eucalyptus grandis HOM05D007469 ORTHO05D003360 3.9e-31 139.8 265 69.4
Lj7C409T15 Lonicera japonica HOM05D007469 ORTHO05D003360 5.1e-31 139.4 289 53.6
BcaB06g27455 Brassica carinata HOM05D007469 ORTHO05D003360 1.5e-30 137.9 274 57.3
MSTRG.15502 Avicennia marina HOM05D007469 ORTHO05D003360 1.9e-30 137.5 304 60.9
A04p13090 Brassica napus HOM05D007469 ORTHO05D003360 7.3e-30 135.6 280 58.6
ClCG00G005290 Citrullus lanatus HOM05D007469 ORTHO05D003360 6.2e-29 132.5 300 61.7
ClCG09G018690 Citrullus lanatus HOM05D007469 ORTHO05D003360 6.2e-29 132.5 300 61.7
ClCG09G018760 Citrullus lanatus HOM05D007469 ORTHO05D003360 6.2e-29 132.5 300 61.7
DCAR_013974 Daucus carota HOM05D007469 ORTHO05D003360 1.8e-28 131.0 251 71.7
BraA04t16968Z Brassica rapa HOM05D007469 ORTHO05D003360 2.4e-28 130.6 280 55.4
Thhalv10027842m.g Eutrema salsugineum HOM05D007469 ORTHO05D003360 5.3e-28 129.4 288 57.3
C04p46840 Brassica napus HOM05D007469 ORTHO05D003360 1.5e-27 127.9 260 61.9
BolC4t26272H Brassica oleracea HOM05D007469 ORTHO05D003360 1.5e-27 127.9 260 61.9
CARHR261930 Cardamine hirsuta HOM05D007469 ORTHO05D003360 2.6e-27 127.1 247 62.8
CDE10G0535 Ceratophyllum demersum HOM05D007469 ORTHO05D003360 2.6e-27 127.1 251 65.7
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 2.6e-27 127.1 182 46.7
Sp7g01840 Schrenkiella parvula HOM05D007469 ORTHO05D003360 2.6e-27 127.1 261 60.2
SGA_v2.0_scaffold30G12492 Striga asiatica HOM05D007469 ORTHO05D003360 2.6e-27 127.1 270 64.1
Potri.001G295200 Populus trichocarpa HOM05D007469 ORTHO05D003360 5.8e-27 125.9 265 64.9
CSS0038198 Camellia sinensis var. sinensis HOM05D007469 ORTHO05D003360 7.6e-27 125.6 290 62.8
HanXRQChr15g0488381 Helianthus annuus HOM05D007469 ORTHO05D003360 7.6e-27 125.6 156 49.4
Psat0s5166g0040 Pisum sativum HOM05D007469 ORTHO05D003360 9.9e-27 125.2 306 61.8
AT5G40160 Arabidopsis thaliana HOM05D007469 ORTHO05D003360 1.3e-26 124.8 258 58.5
Actinidia06038 Actinidia chinensis HOM05D007469 ORTHO05D003360 2.9e-26 123.6 269 65.1
Glyma.11G211316 Glycine max HOM05D007469 ORTHO05D003360 3.8e-26 123.2 275 65.8
Lsat_1_v5_gn_4_181880 Lactuca sativa HOM05D007469 ORTHO05D003360 4.9e-26 122.9 260 66.5
Aqoxy3G00905 Aquilegia oxysepala HOM05D007469 ORTHO05D003360 8.4e-26 122.1 273 60.1
Rhsim10G0026300 Rhododendron simsii HOM05D007469 ORTHO05D003360 3.2e-25 120.2 178 47.8
AL7G49850 Arabidopsis lyrata HOM05D007469 ORTHO05D003360 4.2e-25 119.8 256 57.8
Sc18g0006210 Simmondsia chinensis HOM05D007469 ORTHO05D003360 7.1e-25 119.0 265 34.7
TPR.G666 Trifolium pratense HOM05D007469 ORTHO05D003360 1.2e-24 118.2 272 62.5
Lj1g0016351 Lotus japonicus HOM05D007469 ORTHO05D003360 1.6e-24 117.9 312 59.6
Glyma.18G044300 Glycine max HOM05D007469 ORTHO05D003360 2.1e-24 117.5 256 67.2
CAN.G824.9 Capsicum annuum HOM05D007469 ORTHO05D003360 3.5e-24 116.7 251 69.7
AUR62021431 Chenopodium quinoa HOM05D007469 ORTHO05D003360 3.5e-24 116.7 298 61.4
Migut.K01363 Erythranthe guttata HOM05D007469 ORTHO05D003360 3.5e-24 116.7 211 73.9
Medtr2g048680 Medicago truncatula HOM05D007469 ORTHO05D003360 3.5e-24 116.7 172 45.3
unitig_0.g2798 Utricularia gibba HOM05D007469 ORTHO05D003360 3.5e-24 116.7 254 61.0
arahy.Tifrunner.gnm1.ann1.5026CX Arachis hypogaea HOM05D007469 ORTHO05D003360 1.0e-23 115.2 290 51.4
Peaxi162Scf00290g00012 Petunia axillaris HOM05D007469 ORTHO05D003360 1.0e-23 115.2 251 62.5
Aa31LG9G1510 Aethionema arabicum HOM05D007469 ORTHO05D003360 1.3e-23 114.8 143 50.3
CSS0050487 Camellia sinensis var. sinensis HOM05D007469 ORTHO05D003360 1.3e-23 114.8 229 51.1
Nitab4.5_0004567g0040 Nicotiana tabacum HOM05D007469 ORTHO05D003360 1.3e-23 114.8 266 66.2
VMungo0540G0432 Vigna mungo HOM05D007469 ORTHO05D003360 1.3e-23 114.8 273 65.6
Rhsim10G0026800 Rhododendron simsii HOM05D007469 ORTHO05D003360 1.7e-23 114.4 176 44.9
ATR1159G025 Amborella trichopoda HOM05D007469 ORTHO05D003360 3.0e-23 113.6 263 61.6
Nn4g22877 Nelumbo nucifera HOM05D007469 ORTHO05D003360 3.0e-23 113.6 148 47.3
Carub.0007s3552 Capsella rubella HOM05D007469 ORTHO05D003360 3.9e-23 113.2 257 57.2
Phvul.006G086600 Phaseolus vulgaris HOM05D007469 ORTHO05D003360 6.6e-23 112.5 285 61.8
arahy.Tifrunner.gnm1.ann1.RR2C2G Arachis hypogaea HOM05D007469 ORTHO05D003360 1.1e-22 111.7 297 50.8
Nitab4.5_0001969g0030 Nicotiana tabacum HOM05D007469 ORTHO05D003360 1.9e-22 110.9 300 60.7
SalBow7G0002 Salvia bowleyana HOM05D007469 ORTHO05D003360 1.9e-22 110.9 258 64.0
Ca_02547_v3 Cicer arietinum L. HOM05D007469 ORTHO05D003360 2.1e-21 107.5 146 46.6
Cpa.g.sc88.45 Carica papaya HOM05D007469 ORTHO05D003360 6.2e-21 105.9 192 80.2
Lalb_Chr08g0233251 Lupinus albus HOM05D007469 ORTHO05D003360 1.1e-20 105.1 285 61.1
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 1.4e-20 104.8 79 69.6
ECA232G1734 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.9e-20 102.4 150 44.7
MBI14_g12788_MAGBIO Magnolia biondii HOM05D007469 ORTHO05D003360 4.5e-19 99.8 269 63.2
Zm00001eb208780 Zea mays HOM05D007469 ORTHO05D003360 4.9e-18 96.3 252 62.7
Actinidia36064 Actinidia chinensis HOM05D007469 ORTHO05D003360 1.9e-17 94.4 321 54.2
HPP92_010841 Vanilla planifolia HOM05D007469 ORTHO05D003360 2.4e-17 94.0 253 66.0
Solyc09g009290.3 Solanum lycopersicum HOM05D007469 ORTHO05D003360 3.0e-15 87.0 251 64.1
Sopen09g004030 Solanum pennellii HOM05D007469 ORTHO05D003360 8.7e-15 85.5 254 64.6
PSO161G0131 Papaver somniferum HOM05D007469 ORTHO05D003360 1.1e-14 85.1 132 43.2
SEGI_15817 Sequoiadendron giganteum HOM05D005999 ORTHO05D003360 8.1e-13 79.0 207 28.5
Nn6g31889 Nelumbo nucifera HOM05D005999 ORTHO05D003360 3.1e-12 77.0 75 54.7
vmacro05796 Vaccinium macrocarpon HOM05D007469 ORTHO05D003360 5.3e-12 76.3 164 81.7
Ciclev10025620m.g Citrus clementina HOM05D005999 ORTHO05D003360 9.0e-12 75.5 74 54.1
arahy.Tifrunner.gnm1.ann1.74V199 Arachis hypogaea HOM05D005999 ORTHO05D003360 1.2e-11 75.1 74 52.7
arahy.Tifrunner.gnm1.ann1.JK0YGC Arachis hypogaea HOM05D005999 ORTHO05D003360 1.2e-11 75.1 74 52.7
GSVIVG01005198001 Vitis vinifera HOM05D005999 ORTHO05D003360 2.0e-11 74.3 74 54.1
MBI05_g32278_MAGBIO Magnolia biondii HOM05D005999 ORTHO05D003360 7.6e-11 72.4 74 50.0
VMungo1215G1128 Vigna mungo HOM05D005999 ORTHO05D003360 1.0e-10 72.0 74 50.0
PSO170G6629 Papaver somniferum HOM05D005999 ORTHO05D003360 1.7e-10 71.2 74 48.6
PSO210G1231 Papaver somniferum HOM05D005999 ORTHO05D003360 1.7e-10 71.2 74 48.6
Lj2g0014093 Lotus japonicus HOM05D005999 ORTHO05D003360 2.2e-10 70.9 74 51.4
Zm00001eb211570 Zea mays HOM05D005999 ORTHO05D003360 2.2e-10 70.9 76 47.4
Zm00001eb242830 Zea mays HOM05D005999 ORTHO05D003360 2.2e-10 70.9 76 47.4
Atru.chr3.914 Acer truncatum HOM05D005999 ORTHO05D003360 2.9e-10 70.5 74 52.7
Atru.chr3.919 Acer truncatum HOM05D005999 ORTHO05D003360 2.9e-10 70.5 74 52.7
Glyma.11G081800 Glycine max HOM05D005999 ORTHO05D003360 2.9e-10 70.5 74 50.0
Lalb_Chr05g0212151 Lupinus albus HOM05D005999 ORTHO05D003360 3.8e-10 70.1 87 48.3
Nitab4.5_0000188g0250 Nicotiana tabacum HOM05D005999 ORTHO05D003360 3.8e-10 70.1 87 47.1
ATR0661G352 Amborella trichopoda HOM05D005999 ORTHO05D003360 4.9e-10 69.7 74 48.6
PGSC0003DMG400002708 Solanum tuberosum HOM05D007469 ORTHO05D003360 4.9e-10 69.7 301 55.1
CAN.G865.12 Capsicum annuum HOM05D005999 ORTHO05D003360 6.5e-10 69.3 74 50.0
Manes.01G151300 Manihot esculenta HOM05D005999 ORTHO05D003360 6.5e-10 69.3 74 51.4
CANSAT01G1435 Cannabis sativa HOM05D005999 ORTHO05D003360 8.4e-10 68.9 74 47.3
Nitab4.5_0005409g0010 Nicotiana tabacum HOM05D005999 ORTHO05D003360 8.4e-10 68.9 87 47.1
Zm00001eb002820 Zea mays HOM05D005999 ORTHO05D003360 8.4e-10 68.9 75 46.7
Oeu020651.1 Olea europaea HOM05D005999 ORTHO05D003360 1.1e-09 68.6 74 47.3
Os03g0135600 Oryza sativa ssp. japonica HOM05D005999 ORTHO05D003360 1.1e-09 68.6 79 43.0
Cpa.g.sc6.319 Carica papaya HOM05D005999 ORTHO05D003360 1.4e-09 68.2 76 48.7
CDE05G3499 Ceratophyllum demersum HOM05D005999 ORTHO05D003360 1.9e-09 67.8 97 43.3
Zm00001eb170850 Zea mays HOM05D005999 ORTHO05D003360 1.9e-09 67.8 84 42.9
Dinv08545 Davidia involucrata HOM05D005999 ORTHO05D003360 2.5e-09 67.4 74 47.3
Phvul.002G104000 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 2.5e-09 67.4 74 48.6
TWI73G0962 Tripterygium wilfordii HOM05D005999 ORTHO05D003360 3.2e-09 67.0 75 48.0
TAR628G0133 Trochodendron aralioides HOM05D005999 ORTHO05D003360 3.2e-09 67.0 74 48.6
MSTRG.3620 Avicennia marina HOM05D005999 ORTHO05D003360 4.2e-09 66.6 74 47.3
Lj6A806T47 Lonicera japonica HOM05D005999 ORTHO05D003360 4.2e-09 66.6 74 44.6
SalBow5G5732 Salvia bowleyana HOM05D005999 ORTHO05D003360 4.2e-09 66.6 91 39.6
Sopen02g012860 Solanum pennellii HOM05D005999 ORTHO05D003360 4.2e-09 66.6 87 46.0
THA.LOC104826498 Tarenaya hassleriana HOM05D005999 ORTHO05D003360 4.2e-09 66.6 74 48.6
MELO3C007947.2 Cucumis melo HOM05D005999 ORTHO05D003360 5.5e-09 66.2 74 48.6
BcaB04g20127 Brassica carinata HOM05D005999 ORTHO05D003360 7.1e-09 65.9 74 47.3
Potri.007G060400 Populus trichocarpa HOM05D005999 ORTHO05D003360 7.1e-09 65.9 72 51.4
BraA09t36663Z Brassica rapa HOM05D005999 ORTHO05D003360 9.3e-09 65.5 74 47.3
CsaV3_6G047550 Cucumis sativus L. HOM05D005999 ORTHO05D003360 9.3e-09 65.5 74 48.6
PGSC0003DMG400008679 Solanum tuberosum HOM05D005999 ORTHO05D003360 9.3e-09 65.5 87 46.0
DCAR_011582 Daucus carota HOM05D005999 ORTHO05D003360 1.2e-08 65.1 74 41.9
Sp2g30630 Schrenkiella parvula HOM05D005999 ORTHO05D003360 1.2e-08 65.1 74 47.3
CARHR281700 Cardamine hirsuta HOM05D005999 ORTHO05D003360 2.1e-08 64.3 74 47.3
Glyma.01G161900 Glycine max HOM05D005999 ORTHO05D003360 2.7e-08 63.9 70 50.0
SGA_v2.0_scaffold58G20568 Striga asiatica HOM05D005999 ORTHO05D003360 2.7e-08 63.9 74 43.2
Aa31LG9G1330 Aethionema arabicum HOM05D005999 ORTHO05D003360 3.5e-08 63.5 74 47.3
Cc01_g06010 Coffea canephora HOM05D005999 ORTHO05D003360 3.5e-08 63.5 90 40.0
Thhalv10004296m.g Eutrema salsugineum HOM05D005999 ORTHO05D003360 3.5e-08 63.5 74 47.3
Hma1.2p1_0315F.1_g122640 Hydrangea macrophylla HOM05D005999 ORTHO05D003360 3.5e-08 63.5 74 44.6
HPP92_001740 Vanilla planifolia HOM05D005999 ORTHO05D003360 3.5e-08 63.5 83 42.2
Sed0006391 Sechium edule HOM05D005999 ORTHO05D003360 4.6e-08 63.2 74 47.3
AL8G45550 Arabidopsis lyrata HOM05D005999 ORTHO05D003360 6.0e-08 62.8 89 42.7
CANSAT54G2046 Cannabis sativa HOM05D005999 ORTHO05D003360 7.9e-08 62.4 77 44.2
AUR62026216 Chenopodium quinoa HOM05D005999 ORTHO05D003360 1.0e-07 62.0 77 44.2
AUR62026380 Chenopodium quinoa HOM05D005999 ORTHO05D003360 1.0e-07 62.0 77 44.2
Medtr5g022050 Medicago truncatula HOM05D005999 ORTHO05D003360 1.0e-07 62.0 74 44.6
vmacro18444 Vaccinium macrocarpon HOM05D005999 ORTHO05D003360 1.0e-07 62.0 96 37.5
Glyma.11G081900 Glycine max HOM05D005999 ORTHO05D003360 1.8e-07 61.2 66 47.0
Prupe.7G175600 Prunus persica HOM05D005999 ORTHO05D003360 1.8e-07 61.2 73 46.6
Aqoxy5G01092 Aquilegia oxysepala HOM05D005999 ORTHO05D002169 2.3e-07 60.8 63 52.4
Duzib147G0884 Durio zibethinus HOM05D005999 ORTHO05D003360 2.3e-07 60.8 131 35.9
AT5G66055 Arabidopsis thaliana HOM05D005999 ORTHO05D003360 3.0e-07 60.5 74 44.6
Duzib187G1063 Durio zibethinus HOM05D005999 ORTHO05D003360 3.0e-07 60.5 131 35.1
Gorai.003G005300 Gossypium raimondii HOM05D005999 ORTHO05D003360 3.0e-07 60.5 131 35.9
Medtr5g023090 Medicago truncatula HOM05D005999 ORTHO05D003360 3.0e-07 60.5 73 46.6
Sc16g0001790 Simmondsia chinensis HOM05D005999 ORTHO05D003360 3.0e-07 60.5 77 44.2
Migut.L00736 Erythranthe guttata HOM05D005999 ORTHO05D003360 3.9e-07 60.1 75 41.3
MD02G1122900 Malus domestica HOM05D005999 ORTHO05D003360 5.1e-07 59.7 85 41.2
Lalb_Chr16g0377331 Lupinus albus HOM05D005999 ORTHO05D003360 8.7e-07 58.9 134 32.8
VMungo1215G2992 Vigna mungo HOM05D005999 ORTHO05D003360 8.7e-07 58.9 73 45.2
HanXRQChr09g0257041 Helianthus annuus HOM05D005999 ORTHO05D003360 1.5e-06 58.2 87 34.5
Thecc.01G010800 Theobroma cacao HOM05D005999 ORTHO05D003360 1.5e-06 58.2 131 35.1
Gohir.D03G005000 Gossypium hirsutum HOM05D005999 ORTHO05D003360 1.9e-06 57.8 140 34.3
Phvul.002G103900 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 2.5e-06 57.4 73 45.2
Ah.02g129080 Amaranthus hybridus HOM05D005999 ORTHO05D003360 3.3e-06 57.0 189 28.6
C09p12060 Brassica napus HOM05D005999 ORTHO05D003360 5.7e-06 56.2 131 36.6
BolC9t54096H Brassica oleracea HOM05D005999 ORTHO05D003360 5.7e-06 56.2 131 36.6
Gohir.A02G174800 Gossypium hirsutum HOM05D005999 ORTHO05D003360 5.7e-06 56.2 140 33.6
A09p10170 Brassica napus HOM05D005999 ORTHO05D003360 7.4e-06 55.8 131 36.6
ClCG01G020640 Citrullus lanatus HOM05D005999 ORTHO05D003360 7.4e-06 55.8 74 43.2
Pp3c8_14440 Physcomitrium patens HOM05D005999 ORTHO05D003360 7.4e-06 55.8 79 36.7


User provided reference genes

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