Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 2.6e-106 388.7 188 100.0
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 9.3e-104 380.2 188 97.3
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 3.6e-103 378.3 188 96.8
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 4.8e-100 367.9 188 93.1
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 6.3e-100 367.5 188 93.1
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 6.3e-100 367.5 188 93.1
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 1.4e-99 366.3 188 92.6
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.4e-99 366.3 188 92.6
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 1.4e-99 366.3 188 92.6
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 2.2e-97 359.0 188 89.4
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 2.9e-97 358.6 188 89.9
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 2.9e-97 358.6 188 89.9
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 1.9e-96 355.9 188 89.4
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 1.9e-96 355.9 188 89.9
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 9.4e-96 353.6 188 89.4
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 3.6e-95 351.7 188 87.2
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 3.6e-95 351.7 188 87.8
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 6.1e-95 350.9 179 92.7
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 7.9e-95 350.5 188 88.8
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 1.0e-94 350.1 188 88.8
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 1.8e-94 349.4 185 86.5
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 1.8e-94 349.4 185 86.5
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 3.9e-94 348.2 188 87.2
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 5.1e-94 347.8 185 87.0
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 6.7e-94 347.4 185 87.0
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 8.8e-94 347.1 185 87.0
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.1e-93 346.7 188 88.8
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 1.5e-93 346.3 188 87.2
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 1.5e-93 346.3 185 85.9
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 2.0e-93 345.9 188 87.8
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 2.0e-93 345.9 188 87.8
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 2.0e-93 345.9 187 87.7
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 2.0e-93 345.9 188 86.7
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 2.6e-93 345.5 188 87.8
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 3.3e-93 345.1 188 85.6
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 4.4e-93 344.7 188 86.7
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 5.7e-93 344.4 188 87.2
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 5.7e-93 344.4 188 87.2
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 9.7e-93 343.6 188 85.6
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 1.7e-92 342.8 188 85.6
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 1.7e-92 342.8 188 86.2
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 2.8e-92 342.0 188 85.6
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 2.8e-92 342.0 188 85.1
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 2.8e-92 342.0 188 85.6
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 2.8e-92 342.0 188 85.1
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 2.8e-92 342.0 188 85.6
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 2.8e-92 342.0 188 85.1
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 2.8e-92 342.0 188 85.6
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 6.3e-92 340.9 188 85.6
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 6.3e-92 340.9 188 85.6
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 6.3e-92 340.9 188 85.6
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 6.3e-92 340.9 188 85.6
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 8.2e-92 340.5 188 87.8
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 8.2e-92 340.5 188 84.6
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 1.1e-91 340.1 188 85.6
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 1.4e-91 339.7 188 84.6
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 1.8e-91 339.3 188 85.1
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 1.8e-91 339.3 188 85.1
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 1.8e-91 339.3 188 85.6
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 1.8e-91 339.3 188 85.6
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 1.8e-91 339.3 188 85.6
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 2.4e-91 339.0 188 85.1
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 3.1e-91 338.6 188 85.1
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 5.3e-91 337.8 188 85.1
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 5.3e-91 337.8 188 85.1
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 5.3e-91 337.8 188 83.5
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 5.3e-91 337.8 188 83.5
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 5.3e-91 337.8 188 83.5
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 6.9e-91 337.4 188 85.6
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 6.9e-91 337.4 188 83.5
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 6.9e-91 337.4 188 85.1
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 9.1e-91 337.0 188 84.6
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 1.2e-90 336.7 190 84.7
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 1.2e-90 336.7 190 84.7
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 1.5e-90 336.3 188 84.6
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 3.4e-90 335.1 188 83.5
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 3.4e-90 335.1 188 84.0
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 2.2e-89 332.4 188 84.0
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 2.2e-89 332.4 188 84.0
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 2.2e-89 332.4 188 84.0
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 3.8e-89 331.6 188 84.0
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 5.0e-89 331.3 188 83.5
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 5.0e-89 331.3 188 83.5
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 1.9e-88 329.3 188 83.0
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 83.5
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 82.4
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 83.5
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 2.1e-87 325.9 188 81.4
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 2.7e-87 325.5 188 81.4
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 3.6e-87 325.1 174 89.1
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 6.1e-87 324.3 180 85.0
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 7.9e-87 323.9 188 83.5
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 83.5
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 80.9
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 80.9
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 82.4
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 3.0e-86 322.0 188 80.9
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 3.0e-86 322.0 188 82.4
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 3.0e-86 322.0 188 82.4
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 3.0e-86 322.0 188 82.4
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 5.2e-86 321.2 188 81.9
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.5e-85 319.7 188 80.9
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 9.7e-85 317.0 188 80.3
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 1.7e-84 316.2 188 79.8
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 4.8e-84 314.7 188 78.7
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 8.2e-84 313.9 188 77.7
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 1.1e-83 313.5 188 80.9
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 4.1e-83 311.6 169 84.6
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 4.1e-83 311.6 180 80.6
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 5.3e-83 311.2 188 77.7
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 7.0e-83 310.8 188 78.7
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 1.6e-82 309.7 188 79.8
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 2.6e-82 308.9 188 77.7
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 3.5e-82 308.5 188 77.1
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 1.7e-81 306.2 189 78.3
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 1.5e-80 303.1 188 76.1
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 4.2e-80 301.6 189 78.3
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 9.4e-80 300.4 189 78.3
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 2.1e-79 299.3 188 76.1
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 2.1e-79 299.3 189 77.8
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 6.1e-79 297.7 189 77.8
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 6.1e-79 297.7 188 77.1
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 3.0e-78 295.4 188 76.6
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 4.0e-78 295.0 188 76.1
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 5.2e-78 294.7 189 78.3
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 4.4e-77 291.6 190 74.7
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 9.7e-77 290.4 190 73.7
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 7.0e-75 284.3 188 76.6
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 2.0e-74 282.7 188 76.1
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 4.5e-74 281.6 188 69.7
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 1.3e-73 280.0 188 74.5
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 8.5e-73 277.3 188 69.7
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 8.5e-73 277.3 188 69.7
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 5.5e-72 274.6 188 66.0
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 1.2e-71 273.5 188 68.6
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 1.6e-71 273.1 177 75.7
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 2.1e-71 272.7 189 67.7
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 8.0e-71 270.8 179 73.2
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 1.0e-70 270.4 179 72.6
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 2.6e-69 265.8 165 83.0
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 4.4e-69 265.0 187 66.3
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 7.5e-69 264.2 187 65.8
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 2.8e-68 262.3 187 65.8
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 7.0e-67 257.7 182 70.3
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 1.0e-62 243.8 188 59.6
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 1.6e-58 229.9 177 61.6
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 1.5e-56 223.4 188 62.2
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 4.3e-48 195.3 121 76.0
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 1.4e-46 190.3 187 49.7
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 4.0e-46 188.7 173 60.1
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.2e-44 183.0 188 54.8
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 2.2e-44 183.0 106 81.1
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 5.4e-43 178.3 115 73.0
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 2.0e-42 176.4 123 73.2
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 4.3e-40 168.7 85 94.1
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 1.1e-38 164.1 127 62.2
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 4.7e-31 138.7 78 84.6
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 2.7e-26 122.9 91 68.1
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 5.1e-25 118.6 64 84.4
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 4.2e-11 72.4 35 94.3
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 3.7e-07 59.3 39 69.2


User provided reference genes

Program Settings