Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G064400 Prunus persica HOM05D002908 ORTHO05D007390 9.2e-150 533.5 262 100.0
MD09G1208200 Malus domestica HOM05D002908 ORTHO05D007390 1.8e-145 519.2 262 96.6
MD17G1189500 Malus domestica HOM05D002908 ORTHO05D007390 1.9e-142 509.2 262 94.3
RcHm_v2.0_Chr2g0139271 Rosa chinensis HOM05D002908 ORTHO05D007390 5.2e-137 491.1 261 92.0
FvH4_6g31910 Fragaria vesca HOM05D002908 ORTHO05D007390 6.8e-137 490.7 261 91.6
FAN14G2394 Fragaria x ananassa HOM05D002908 ORTHO05D007390 6.8e-137 490.7 261 91.6
FAN02G4032 Fragaria x ananassa HOM05D002908 ORTHO05D007390 2.0e-136 489.2 261 91.2
Cfa002106 Carpinus fangiana HOM05D002908 ORTHO05D007390 1.3e-135 486.5 266 88.7
FAN09G2740 Fragaria x ananassa HOM05D002908 ORTHO05D007390 1.3e-135 486.5 261 91.2
CANSAT56G3591 Cannabis sativa HOM05D002908 ORTHO05D007390 9.2e-134 480.3 255 89.4
QL05p021375 Quercus lobata HOM05D002908 ORTHO05D007390 9.2e-134 480.3 265 88.7
Glyma.08G203400 Glycine max HOM05D002908 ORTHO05D007390 3.0e-132 475.3 262 87.0
Lalb_Chr01g0013051 Lupinus albus HOM05D002908 ORTHO05D007390 3.9e-132 474.9 255 89.4
VMungo0331G0294 Vigna mungo HOM05D002908 ORTHO05D007390 5.1e-132 474.6 262 87.0
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea HOM05D002908 ORTHO05D007390 1.1e-131 473.4 262 85.5
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea HOM05D002908 ORTHO05D007390 1.1e-131 473.4 262 85.5
Ca_11526_v3 Cicer arietinum L. HOM05D002908 ORTHO05D007390 1.1e-131 473.4 256 88.7
Medtr8g013660 Medicago truncatula HOM05D002908 ORTHO05D007390 1.5e-131 473.0 255 88.6
Phvul.010G147500 Phaseolus vulgaris HOM05D002908 ORTHO05D007390 1.5e-131 473.0 262 86.6
TPR.G14821 Trifolium pratense HOM05D002908 ORTHO05D007390 1.9e-131 472.6 255 88.6
Glyma.07G018400 Glycine max HOM05D002908 ORTHO05D007390 3.3e-131 471.9 262 87.0
PGR102G0394 Punica granatum HOM05D002908 ORTHO05D007390 4.3e-131 471.5 255 88.6
ClCG07G013190 Citrullus lanatus HOM05D002908 ORTHO05D007390 5.6e-131 471.1 256 86.7
Ciclev10026026m.g Citrus clementina HOM05D002908 ORTHO05D007390 9.6e-131 470.3 261 87.4
Sed0011260 Sechium edule HOM05D002908 ORTHO05D007390 1.2e-130 469.9 256 86.7
Potri.003G051500 Populus trichocarpa HOM05D002908 ORTHO05D007390 2.1e-130 469.2 255 87.5
Thecc.06G094700 Theobroma cacao HOM05D002908 ORTHO05D007390 2.1e-130 469.2 255 88.2
GSVIVG01017049001 Vitis vinifera HOM05D002908 ORTHO05D007390 2.1e-130 469.2 267 85.4
Duzib235G0543 Durio zibethinus HOM05D002908 ORTHO05D007390 6.2e-130 467.6 255 87.8
MELO3C012977.2 Cucumis melo HOM05D002908 ORTHO05D007390 1.1e-129 466.8 256 86.3
CsaV3_3G023830 Cucumis sativus L. HOM05D002908 ORTHO05D007390 2.4e-129 465.7 256 85.9
Gohir.A06G188700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 4.0e-129 464.9 255 87.5
Gohir.D06G197300 Gossypium hirsutum HOM05D002908 ORTHO05D007390 4.0e-129 464.9 255 87.5
Gorai.010G229600 Gossypium raimondii HOM05D002908 ORTHO05D007390 4.0e-129 464.9 255 87.5
Atru.chr1.3416 Acer truncatum HOM05D002908 ORTHO05D007390 1.2e-128 463.4 255 87.1
Dinv30470 Davidia involucrata HOM05D002908 ORTHO05D007390 1.5e-128 463.0 255 87.1
COL.COLO4_30459 Corchorus olitorius HOM05D002908 ORTHO05D007390 2.6e-128 462.2 254 87.0
Manes.04G131100 Manihot esculenta HOM05D002908 ORTHO05D007390 3.4e-128 461.8 255 86.3
Eucgr.J02953 Eucalyptus grandis HOM05D002908 ORTHO05D007390 4.4e-128 461.5 254 85.8
TWI18G0563 Tripterygium wilfordii HOM05D002908 ORTHO05D007390 7.6e-128 460.7 255 87.1
vmacro18877 Vaccinium macrocarpon HOM05D002908 ORTHO05D007390 7.6e-128 460.7 254 87.0
Potri.001G186000 Populus trichocarpa HOM05D002908 ORTHO05D007390 9.9e-128 460.3 255 86.7
CAN.G1152.12 Capsicum annuum HOM05D002908 ORTHO05D007390 1.3e-127 459.9 255 85.1
Migut.D01011 Erythranthe guttata HOM05D002908 ORTHO05D007390 1.7e-127 459.5 255 86.3
CSS0023180 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D007390 2.2e-127 459.1 255 85.9
Gorai.011G073300 Gossypium raimondii HOM05D002908 ORTHO05D007390 2.9e-127 458.8 255 86.7
CiPaw.02G148100 Carya illinoinensis HOM05D002908 ORTHO05D007390 4.9e-127 458.0 254 86.2
Nitab4.5_0009963g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 1.1e-126 456.8 255 83.9
Cc06_g20260 Coffea canephora HOM05D002908 ORTHO05D007390 1.4e-126 456.4 255 84.3
ECA234G0421 Erigeron canadensis HOM05D002908 ORTHO05D007390 1.4e-126 456.4 255 85.1
Manes.11G036900 Manihot esculenta HOM05D002908 ORTHO05D007390 2.4e-126 455.7 255 84.7
Nitab4.5_0000351g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 4.2e-126 454.9 255 83.9
Solyc06g066570.4 Solanum lycopersicum HOM05D002908 ORTHO05D007390 4.2e-126 454.9 255 83.9
Sopen06g024840 Solanum pennellii HOM05D002908 ORTHO05D007390 4.2e-126 454.9 255 83.9
PGSC0003DMG400016501 Solanum tuberosum HOM05D002908 ORTHO05D007390 4.2e-126 454.9 255 83.9
Peaxi162Scf00015g00145 Petunia axillaris HOM05D002908 ORTHO05D007390 5.4e-126 454.5 254 84.6
Sc15g0002180 Simmondsia chinensis HOM05D002908 ORTHO05D007390 7.1e-126 454.1 260 81.9
MSTRG.4742 Avicennia marina HOM05D002908 ORTHO05D007390 1.2e-125 453.4 255 84.3
SGA_v2.0_scaffold68G22970 Striga asiatica HOM05D002908 ORTHO05D007390 2.1e-125 452.6 255 83.9
Lsat_1_v5_gn_5_131021 Lactuca sativa HOM05D002908 ORTHO05D007390 2.7e-125 452.2 255 83.5
Actinidia32717 Actinidia chinensis HOM05D002908 ORTHO05D007390 4.6e-125 451.4 255 84.7
Sabra03G0027500 Salix brachista HOM05D002908 ORTHO05D007390 4.6e-125 451.4 282 78.7
Duzib192G0943 Durio zibethinus HOM05D002908 ORTHO05D007390 7.8e-125 450.7 255 84.7
AUR62011685 Chenopodium quinoa HOM05D002908 ORTHO05D007390 3.9e-124 448.4 254 81.5
HanXRQChr12g0360831 Helianthus annuus HOM05D002908 ORTHO05D007390 3.9e-124 448.4 255 83.1
TAR624G0208 Trochodendron aralioides HOM05D002908 ORTHO05D007390 6.6e-124 447.6 255 84.3
HanXRQChr04g0096211 Helianthus annuus HOM05D002908 ORTHO05D007390 3.3e-123 445.3 255 82.7
Oeu000462.1 Olea europaea HOM05D002908 ORTHO05D007390 4.3e-123 444.9 255 83.1
Nn2g11662 Nelumbo nucifera HOM05D002908 ORTHO05D007390 1.6e-122 443.0 254 83.5
MBI04_g14938_MAGBIO Magnolia biondii HOM05D002908 ORTHO05D007390 4.8e-122 441.4 255 83.5
EL10Ac9g22051 Beta vulgaris HOM05D002908 ORTHO05D007390 2.4e-121 439.1 254 78.3
THA.LOC104813553 Tarenaya hassleriana HOM05D002908 ORTHO05D007390 5.3e-121 438.0 254 81.9
Aqoxy7G01537 Aquilegia oxysepala HOM05D002908 ORTHO05D007390 9.0e-121 437.2 254 81.5
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 1.3e-119 433.3 255 83.1
SGA_v2.0_scaffold4G02012 Striga asiatica HOM05D002908 ORTHO05D007390 3.8e-119 431.8 255 81.2
CARHR074760 Cardamine hirsuta HOM05D002908 ORTHO05D007390 4.9e-119 431.4 254 79.9
AT1G79810 Arabidopsis thaliana HOM05D002908 ORTHO05D007390 1.1e-118 430.3 256 80.5
HPP92_002914 Vanilla planifolia HOM05D002908 ORTHO05D007390 1.1e-118 430.3 255 81.2
AUR62016511 Chenopodium quinoa HOM05D002908 ORTHO05D007390 1.9e-118 429.5 254 79.9
Sp5g35950 Schrenkiella parvula HOM05D002908 ORTHO05D007390 7.1e-118 427.6 254 79.9
AL2G41740 Arabidopsis lyrata HOM05D002908 ORTHO05D007390 1.2e-117 426.8 254 80.7
Thhalv10018845m.g Eutrema salsugineum HOM05D002908 ORTHO05D007390 3.5e-117 425.2 254 79.5
Gohir.D10G068700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 3.5e-117 425.2 255 81.6
PSO566G0119 Papaver somniferum HOM05D002908 ORTHO05D007390 3.5e-117 425.2 255 80.8
PSO782G2745 Papaver somniferum HOM05D002908 ORTHO05D007390 7.9e-117 424.1 255 80.4
ATR0315G165 Amborella trichopoda HOM05D002908 ORTHO05D007390 1.3e-116 423.3 261 77.4
A07p26340 Brassica napus HOM05D002908 ORTHO05D007390 1.3e-116 423.3 255 79.2
C06p28730 Brassica napus HOM05D002908 ORTHO05D007390 1.3e-116 423.3 255 79.2
BraA07t30278Z Brassica rapa HOM05D002908 ORTHO05D007390 1.3e-116 423.3 255 79.2
Haze_16343 Corylus avellana HOM05D002908 ORTHO05D007390 2.3e-116 422.5 224 91.5
TAR636G3411 Trochodendron aralioides HOM05D002908 ORTHO05D007390 5.1e-116 421.4 255 78.8
BolC6t38042H Brassica oleracea HOM05D002908 ORTHO05D007390 6.7e-116 421.0 255 78.8
Carub.0002s2769 Capsella rubella HOM05D002908 ORTHO05D007390 8.7e-116 420.6 254 79.1
CDE05G0315 Ceratophyllum demersum HOM05D002908 ORTHO05D007390 8.7e-116 420.6 254 78.3
unitig_736.g22790 Utricularia gibba HOM05D002908 ORTHO05D007390 1.5e-115 419.9 257 75.9
Hund00658 Selenicereus undatus HOM05D002908 ORTHO05D007390 4.8e-114 414.8 254 77.2
Sabra01G0154100 Salix brachista HOM05D002908 ORTHO05D007390 9.0e-113 410.6 287 73.9
Rhsim08G0224800 Rhododendron simsii HOM05D002908 ORTHO05D007390 2.6e-112 409.1 263 78.7
CiPaw.01G234600 Carya illinoinensis HOM05D002908 ORTHO05D007390 5.8e-112 407.9 222 87.8
Os05g0275700 Oryza sativa ssp. japonica HOM05D002908 ORTHO05D007390 9.9e-112 407.1 255 77.3
Lj3g0013088 Lotus japonicus HOM05D002908 ORTHO05D007390 2.9e-111 405.6 225 86.7
Zm00001eb031430 Zea mays HOM05D002908 ORTHO05D007390 7.1e-110 401.0 255 74.9
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 1.2e-109 400.2 224 86.6
Aa31LG4G20 Aethionema arabicum HOM05D002908 ORTHO05D007390 9.6e-107 390.6 286 66.4
Hund06642 Selenicereus undatus HOM05D002908 ORTHO05D007390 1.4e-105 386.7 224 82.6
DCAR_026336 Daucus carota HOM05D002908 ORTHO05D007390 5.8e-104 381.3 211 85.8
SalBow7G1474 Salvia bowleyana HOM05D002908 ORTHO05D007390 3.3e-99 365.5 277 68.2
Lsat_1_v5_gn_1_35361 Lactuca sativa HOM05D002908 ORTHO05D007390 6.5e-95 351.3 211 82.0
Pp3c3_18540 Physcomitrium patens HOM05D002908 ORTHO05D007390 2.5e-86 322.8 260 62.3
SMO146G0339 Selaginella moellendorffii HOM05D002908 ORTHO05D007390 2.5e-86 322.8 258 61.6
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 5.5e-86 321.6 172 89.5
Mapoly0052s0120 Marchantia polymorpha HOM05D002908 ORTHO05D007390 5.5e-86 321.6 260 62.3
Lalb_Chr25g0280041 Lupinus albus HOM05D002908 ORTHO05D007390 4.8e-82 308.5 206 75.7
SEGI_14821 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 2.1e-77 293.1 206 67.0
CBR_g960 Chara braunii HOM05D002908 ORTHO05D007390 2.1e-69 266.5 258 55.0
Psat4g199400 Pisum sativum HOM05D002908 ORTHO05D007390 7.0e-65 251.5 143 83.2
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis HOM05D002908 ORTHO05D007390 5.9e-64 248.4 207 61.8
Cpa.g.sc109.47 Carica papaya HOM05D002908 ORTHO05D007390 5.5e-62 241.9 128 89.8
Sed0019299 Sechium edule HOM05D002908 ORTHO05D007390 6.3e-58 228.4 145 76.6
Lsat_1_v5_gn_1_85060 Lactuca sativa HOM05D002908 ORTHO05D007390 3.7e-50 202.6 176 61.4
Gohir.A10G083732 Gossypium hirsutum HOM05D002908 ORTHO05D007390 3.9e-47 192.6 108 83.3
Solyc03g120520.2 Solanum lycopersicum HOM05D002908 ORTHO05D007390 1.1e-46 191.0 236 46.2
MCO16G131 Micromonas commoda HOM05D002908 ORTHO05D007390 4.1e-41 172.6 271 36.5
CAN.G438.36 Capsicum annuum HOM05D002908 ORTHO05D007390 2.7e-40 169.9 114 72.8
PGSC0003DMG400002631 Solanum tuberosum HOM05D002908 ORTHO05D007390 2.3e-39 166.8 105 78.1
Cre17.g698800 Chlamydomonas reinhardtii HOM05D002908 ORTHO05D007390 4.1e-33 146.0 305 34.1
Lj5C56G8 Lonicera japonica HOM05D002908 ORTHO05D007390 2.7e-32 143.3 103 74.8
PRCOL_00006980 Prasinoderma coloniale HOM05D000198 ORTHO05D003232 3.6e-29 132.9 278 35.3
Medtr7g090350 Medicago truncatula HOM05D002908 ORTHO05D007390 8.6e-23 111.7 250 35.2
Sopen00g008760 Solanum pennellii HOM05D002908 ORTHO05D007390 2.4e-17 93.6 98 53.1
Rhsim03G0241200 Rhododendron simsii HOM05D002908 ORTHO05D050692 3.5e-16 89.7 45 93.3
Rhsim12G0105800 Rhododendron simsii HOM05D002908 ORTHO05D340239 5.6e-14 82.4 55 74.5
Lsat_1_v5_gn_3_20480 Lactuca sativa HOM05D001398 ORTHO05D011740 4.0e-12 76.3 78 53.8
SEGI_00949 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 5.3e-12 75.9 40 85.0
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 4.4e-11 72.8 37 89.2
Solyc12g027700.1 Solanum lycopersicum HOM05D002908 ORTHO05D050692 1.2e-08 64.7 30 90.0


User provided reference genes

Program Settings