Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G054600 Prunus persica HOM05D021217 ORTHO05D022662 7.5e-206 720.3 369 100.0
FvH4_6g32452 Fragaria vesca HOM05D021512 ORTHO05D022597 1.2e-38 164.9 319 37.6
RcHm_v2.0_Chr4g0395301 Rosa chinensis HOM05D033000 ORTHO05D035326 5.1e-37 159.5 356 37.6
FAN14G5803 Fragaria x ananassa HOM05D021512 ORTHO05D022597 4.9e-32 142.9 285 36.5
Hma1.2p1_0978F.1_g243340 Hydrangea macrophylla HOM05D001477 ORTHO05D001182 7.1e-31 139.0 326 33.7
Prupe.3G054700 Prunus persica HOM05D021217 ORTHO05D022662 2.3e-29 134.0 152 50.7
FAN12G0488 Fragaria x ananassa HOM05D021217 ORTHO05D022662 5.6e-28 129.4 373 30.8
FvH4_6g32461 Fragaria vesca HOM05D021512 ORTHO05D022597 7.4e-28 129.0 280 36.1
FAN22G2157 Fragaria x ananassa HOM05D021217 ORTHO05D022662 3.1e-26 123.6 358 33.0
FvH4_4g28000 Fragaria vesca HOM05D021217 ORTHO05D022662 3.4e-25 120.2 336 30.7
FAN17G1714 Fragaria x ananassa HOM05D021217 ORTHO05D022662 4.2e-23 113.2 366 30.3
QL03p072973 Quercus lobata HOM05D001477 ORTHO05D001182 1.6e-22 111.3 308 32.1
QL01p054884 Quercus lobata HOM05D001477 ORTHO05D001182 6.0e-22 109.4 287 32.8
QL05p018582 Quercus lobata HOM05D001477 ORTHO05D001182 7.4e-20 102.4 333 27.9
FvH4_6g32840 Fragaria vesca HOM05D001477 ORTHO05D001182 1.6e-19 101.3 352 28.1
FAN05G3307 Fragaria x ananassa HOM05D000862 ORTHO05D000943 1.6e-19 101.3 352 28.7
QL05p016344 Quercus lobata HOM05D001477 ORTHO05D001182 2.1e-19 100.9 325 28.9
QL93p1866_0198 Quercus lobata HOM05D001477 ORTHO05D001182 2.1e-19 100.9 333 27.6
Haze_15913 Corylus avellana HOM05D001477 ORTHO05D001182 2.8e-19 100.5 353 28.3
FAN14G2250 Fragaria x ananassa HOM05D000862 ORTHO05D000943 2.8e-19 100.5 353 28.0
Manes.11G030101 Manihot esculenta HOM05D001477 ORTHO05D001182 1.1e-18 98.6 343 28.3
arahy.Tifrunner.gnm1.ann1.Q9TM1C Arachis hypogaea HOM05D000862 ORTHO05D000943 3.1e-18 97.1 332 26.2
Haze_00867 Corylus avellana HOM05D001477 ORTHO05D001182 4.1e-18 96.7 328 27.7
Lj3g0011959 Lotus japonicus HOM05D001477 ORTHO05D001182 4.1e-18 96.7 351 25.1
Nitab4.5_0001927g0030 Nicotiana tabacum HOM05D001477 ORTHO05D001182 4.1e-18 96.7 348 27.0
MELO3C013024.2 Cucumis melo HOM05D001477 ORTHO05D001182 9.0e-18 95.5 290 26.9
QL05p053661 Quercus lobata HOM05D001477 ORTHO05D001182 1.2e-17 95.1 308 29.9
Oeu037539.1 Olea europaea HOM05D001477 ORTHO05D001182 2.0e-17 94.4 310 29.4
Nitab4.5_0006071g0070 Nicotiana tabacum HOM05D001477 ORTHO05D001182 2.6e-17 94.0 263 27.0
arahy.Tifrunner.gnm1.ann1.WE7T8M Arachis hypogaea HOM05D000862 ORTHO05D000943 4.5e-17 93.2 332 26.5
CsaV3_3G044110 Cucumis sativus L. HOM05D001477 ORTHO05D001182 5.8e-17 92.8 290 26.6
QL02p094064 Quercus lobata HOM05D001477 ORTHO05D001182 5.8e-17 92.8 317 29.0
Cfa003613 Carpinus fangiana HOM05D001477 ORTHO05D001182 7.6e-17 92.4 338 26.9
MD17G1178500 Malus domestica HOM05D001477 ORTHO05D001182 1.7e-16 91.3 318 25.5
ClCG07G013540 Citrullus lanatus HOM05D001477 ORTHO05D001182 2.9e-16 90.5 295 25.8
QL03p032024 Quercus lobata HOM05D001477 ORTHO05D001182 2.9e-16 90.5 301 28.2
RcHm_v2.0_Chr2g0142131 Rosa chinensis HOM05D001477 ORTHO05D001182 2.9e-16 90.5 350 25.4
CiPaw.01G227900 Carya illinoinensis HOM05D001477 ORTHO05D001182 5.0e-16 89.7 351 26.8
Manes.11G029400 Manihot esculenta HOM05D001477 ORTHO05D001182 1.9e-15 87.8 329 27.1
Nitab4.5_0005661g0030 Nicotiana tabacum HOM05D001477 ORTHO05D001182 1.9e-15 87.8 318 26.4
Nitab4.5_0004848g0100 Nicotiana tabacum HOM05D001477 ORTHO05D001182 2.5e-15 87.4 263 26.2
Prupe.3G053600 Prunus persica HOM05D001477 ORTHO05D001182 2.5e-15 87.4 332 27.4
Sopen03g040100 Solanum pennellii HOM05D001477 ORTHO05D001182 3.2e-15 87.0 274 25.5
PGSC0003DMG400002600 Solanum tuberosum HOM05D001477 ORTHO05D001182 4.2e-15 86.7 301 25.2
ECA238G4135 Erigeron canadensis HOM05D001477 ORTHO05D001182 5.5e-15 86.3 249 28.1
Sed0010878 Sechium edule HOM05D001477 ORTHO05D001182 7.1e-15 85.9 291 26.1
Haze_03787 Corylus avellana HOM05D001477 ORTHO05D001182 1.2e-14 85.1 354 25.7
COL.COLO4_30594 Corchorus olitorius HOM05D000862 ORTHO05D000943 2.1e-14 84.3 216 28.7
QL01p017794 Quercus lobata HOM05D001477 ORTHO05D001182 2.1e-14 84.3 301 29.2
Solyc03g121290.4 Solanum lycopersicum HOM05D001477 ORTHO05D001182 2.1e-14 84.3 274 25.9
CAN.G1668.1 Capsicum annuum HOM05D001477 ORTHO05D001182 3.5e-14 83.6 309 25.2
MD09G1197600 Malus domestica HOM05D001477 ORTHO05D001182 3.5e-14 83.6 318 24.8
arahy.Tifrunner.gnm1.ann1.THM2IN Arachis hypogaea HOM05D001477 ORTHO05D001182 6.1e-14 82.8 291 27.8
FAN02G0832 Fragaria x ananassa HOM05D000862 ORTHO05D001182 7.9e-14 82.4 344 27.0
FAN02G0884 Fragaria x ananassa HOM05D001477 ORTHO05D001182 7.9e-14 82.4 344 27.0
Ca_01177_v3 Cicer arietinum L. HOM05D001477 ORTHO05D001182 1.0e-13 82.0 343 25.9
Peaxi162Scf00038g01239 Petunia axillaris HOM05D001477 ORTHO05D001182 1.0e-13 82.0 262 26.3
Solyc03g119890.4 Solanum lycopersicum HOM05D009966 ORTHO05D012083 2.3e-13 80.9 256 28.1
QL05p032382 Quercus lobata HOM05D001477 ORTHO05D001182 3.0e-13 80.5 343 25.4
QL05p033764 Quercus lobata HOM05D001477 ORTHO05D001182 3.0e-13 80.5 343 25.4
arahy.Tifrunner.gnm1.ann1.ZKXL37 Arachis hypogaea HOM05D001477 ORTHO05D001182 3.9e-13 80.1 291 27.5
Atru.chr6.1369 Acer truncatum HOM05D001477 ORTHO05D001182 5.1e-13 79.7 270 27.4
Sopen03g038770 Solanum pennellii HOM05D009966 ORTHO05D012083 5.1e-13 79.7 256 28.5
arahy.Tifrunner.gnm1.ann1.IC7WFX Arachis hypogaea HOM05D001477 ORTHO05D001182 6.7e-13 79.3 319 30.4
Ciclev10025305m.g Citrus clementina HOM05D001477 ORTHO05D001182 6.7e-13 79.3 307 26.4
Nitab4.5_0002423g0050 Nicotiana tabacum HOM05D012574 ORTHO05D001182 6.7e-13 79.3 176 33.5
Ah.16g101830 Amaranthus hybridus HOM05D000001 ORTHO05D001705 8.7e-13 79.0 311 25.4
Cfa015667 Carpinus fangiana HOM05D001477 ORTHO05D001182 8.7e-13 79.0 278 26.6
PGSC0003DMG401005699 Solanum tuberosum HOM05D009966 ORTHO05D012083 8.7e-13 79.0 256 28.1
arahy.Tifrunner.gnm1.ann1.5Y9MTZ Arachis hypogaea HOM05D001477 ORTHO05D001182 1.1e-12 78.6 305 28.9
arahy.Tifrunner.gnm1.ann1.Y0PLFS Arachis hypogaea HOM05D001477 ORTHO05D001182 1.1e-12 78.6 345 28.7
PGSC0003DMG402005699 Solanum tuberosum HOM05D009966 ORTHO05D012083 1.1e-12 78.6 256 28.9
Manes.07G068500 Manihot esculenta HOM05D001477 ORTHO05D001182 1.5e-12 78.2 287 26.1
Potri.012G099400 Populus trichocarpa HOM05D001477 ORTHO05D001182 1.5e-12 78.2 283 27.9
FvH4_6g32750 Fragaria vesca HOM05D000106 ORTHO05D000160 1.9e-12 77.8 148 37.2
arahy.Tifrunner.gnm1.ann1.I5UGXE Arachis hypogaea HOM05D001477 ORTHO05D001182 2.5e-12 77.4 300 25.7
Haze_19062 Corylus avellana HOM05D001477 ORTHO05D001182 2.5e-12 77.4 267 27.0
PGSC0003DMG400006095 Solanum tuberosum HOM05D006683 ORTHO05D008629 3.3e-12 77.0 305 26.9
arahy.Tifrunner.gnm1.ann1.WE1EI7 Arachis hypogaea HOM05D001477 ORTHO05D001182 5.7e-12 76.3 308 28.6
Cfa020769 Carpinus fangiana HOM05D001477 ORTHO05D001182 5.7e-12 76.3 245 28.6
Glyma.15G022500 Glycine max HOM05D000862 ORTHO05D000943 5.7e-12 76.3 361 22.7
arahy.Tifrunner.gnm1.ann1.KH6B5H Arachis hypogaea HOM05D001477 ORTHO05D001182 7.4e-12 75.9 275 28.4
CsaV3_3G044070 Cucumis sativus L. HOM05D001477 ORTHO05D001182 7.4e-12 75.9 319 24.1
HanXRQChr09g0276031 Helianthus annuus HOM05D001477 ORTHO05D001182 7.4e-12 75.9 259 25.9
Medtr7g016460 Medicago truncatula HOM05D001477 ORTHO05D001182 9.7e-12 75.5 240 30.4
CiPaw.15G162600 Carya illinoinensis HOM05D001477 ORTHO05D001182 1.3e-11 75.1 253 25.3
Ciclev10027487m.g Citrus clementina HOM05D001477 ORTHO05D001182 1.3e-11 75.1 278 27.3
Medtr2g100590 Medicago truncatula HOM05D001477 ORTHO05D001182 1.3e-11 75.1 315 24.4
arahy.Tifrunner.gnm1.ann1.CVQ7TS Arachis hypogaea HOM05D001477 ORTHO05D001182 1.6e-11 74.7 300 26.0
arahy.Tifrunner.gnm1.ann1.RP4NXG Arachis hypogaea HOM05D001477 ORTHO05D001182 1.6e-11 74.7 308 27.6
FAN03G1733 Fragaria x ananassa HOM05D001477 ORTHO05D001182 1.6e-11 74.7 312 26.0
Psat5g295000 Pisum sativum HOM05D001477 ORTHO05D001182 2.2e-11 74.3 297 25.3
arahy.Tifrunner.gnm1.ann1.P3DR9P Arachis hypogaea HOM05D001477 ORTHO05D001182 3.7e-11 73.6 322 27.0
ECA232G5008 Erigeron canadensis HOM05D000862 ORTHO05D000943 4.8e-11 73.2 282 25.9
FAN17G1309 Fragaria x ananassa HOM05D033000 ORTHO05D035326 4.8e-11 73.2 143 38.5
Sabra12G0072600 Salix brachista HOM05D001477 ORTHO05D001182 4.8e-11 73.2 379 26.1
arahy.Tifrunner.gnm1.ann1.S0UFBH Arachis hypogaea HOM05D001477 ORTHO05D001182 1.1e-10 72.0 250 28.0
arahy.Tifrunner.gnm1.ann1.U2Q3GN Arachis hypogaea HOM05D001477 ORTHO05D001182 1.1e-10 72.0 286 27.6
TPR.G6557 Trifolium pratense HOM05D001477 ORTHO05D001182 1.1e-10 72.0 326 27.0
arahy.Tifrunner.gnm1.ann1.L6A5G2 Arachis hypogaea HOM05D001477 ORTHO05D001182 1.4e-10 71.6 310 28.4
arahy.Tifrunner.gnm1.ann1.6K70C8 Arachis hypogaea HOM05D001477 ORTHO05D001182 1.8e-10 71.2 308 27.3
Ciclev10000694m.g Citrus clementina HOM05D001477 ORTHO05D001182 1.8e-10 71.2 248 27.4
Haze_18899 Corylus avellana HOM05D001477 ORTHO05D001182 1.8e-10 71.2 214 29.0
arahy.Tifrunner.gnm1.ann1.1UL4FR Arachis hypogaea HOM05D001477 ORTHO05D001182 3.1e-10 70.5 321 26.5
QL04p060682 Quercus lobata HOM05D001477 ORTHO05D001182 3.1e-10 70.5 259 27.8
arahy.Tifrunner.gnm1.ann1.7B0ACA Arachis hypogaea HOM05D001477 ORTHO05D001182 4.1e-10 70.1 308 27.9
arahy.Tifrunner.gnm1.ann1.G3S6MP Arachis hypogaea HOM05D001477 ORTHO05D001182 4.1e-10 70.1 269 26.4
EL10Ac9g21142 Beta vulgaris HOM05D001477 ORTHO05D001182 4.1e-10 70.1 273 25.6
CANSAT80G1807 Cannabis sativa HOM05D000051 ORTHO05D010453 4.1e-10 70.1 314 25.8
Lsat_1_v5_gn_4_96261 Lactuca sativa HOM05D000862 ORTHO05D000943 4.1e-10 70.1 285 27.4
arahy.Tifrunner.gnm1.ann1.SBEJ10 Arachis hypogaea HOM05D004014 ORTHO05D005890 6.9e-10 69.3 266 26.7
QL01p017812 Quercus lobata HOM05D001477 ORTHO05D001182 1.2e-09 68.6 253 28.5
Ciclev10033697m.g Citrus clementina HOM05D001477 ORTHO05D001182 1.5e-09 68.2 301 24.6
arahy.Tifrunner.gnm1.ann1.8XG5WK Arachis hypogaea HOM05D001477 ORTHO05D001182 2.0e-09 67.8 283 28.6
arahy.Tifrunner.gnm1.ann1.LUKB4F Arachis hypogaea HOM05D001477 ORTHO05D001182 2.6e-09 67.4 285 27.0
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 2.6e-09 67.4 350 23.7
Sopen01g028730 Solanum pennellii HOM05D006683 ORTHO05D008629 3.4e-09 67.0 281 26.3
arahy.Tifrunner.gnm1.ann1.37HYKA Arachis hypogaea HOM05D001477 ORTHO05D001182 4.5e-09 66.6 280 27.5
arahy.Tifrunner.gnm1.ann1.RN7II1 Arachis hypogaea HOM05D001477 ORTHO05D001182 4.5e-09 66.6 317 23.3
arahy.Tifrunner.gnm1.ann1.T6CN8Y Arachis hypogaea HOM05D001477 ORTHO05D001182 5.9e-09 66.2 281 24.6
COL.COLO4_07576 Corchorus olitorius HOM05D001477 ORTHO05D001182 7.7e-09 65.9 302 28.8
arahy.Tifrunner.gnm1.ann1.5N34JX Arachis hypogaea HOM05D001477 ORTHO05D001182 1.0e-08 65.5 287 26.1
Ciclev10031194m.g Citrus clementina HOM05D001477 ORTHO05D001182 1.0e-08 65.5 324 24.4
Potri.013G151700 Populus trichocarpa HOM05D008065 ORTHO05D010197 1.0e-08 65.5 163 29.4
Cfa020687 Carpinus fangiana HOM05D001477 ORTHO05D001182 1.3e-08 65.1 243 25.9
arahy.Tifrunner.gnm1.ann1.ADN3D2 Arachis hypogaea HOM05D001477 ORTHO05D001182 1.7e-08 64.7 262 26.0
SGA_v2.0_scaffold37G14880 Striga asiatica HOM05D005930 ORTHO05D003423 1.7e-08 64.7 259 24.3
FvH4_5g26980 Fragaria vesca HOM05D033000 ORTHO05D035326 2.9e-08 63.9 105 39.0
Sabra11G0031000 Salix brachista HOM05D008065 ORTHO05D010197 3.8e-08 63.5 176 29.0
Sed0016693 Sechium edule HOM05D001477 ORTHO05D001182 3.8e-08 63.5 297 24.6
arahy.Tifrunner.gnm1.ann1.YWW6BT Arachis hypogaea HOM05D001477 ORTHO05D001182 5.0e-08 63.2 350 23.7
Haze_18985 Corylus avellana HOM05D001477 ORTHO05D001182 5.0e-08 63.2 244 25.0
Sabra19G0121400 Salix brachista HOM05D008065 ORTHO05D010197 5.0e-08 63.2 176 29.0
RcHm_v2.0_Chr2g0160731 Rosa chinensis HOM05D008065 ORTHO05D010197 8.5e-08 62.4 151 27.2
Sabra19G0132700 Salix brachista HOM05D008065 ORTHO05D010197 8.5e-08 62.4 167 29.3
QL04p079456 Quercus lobata HOM05D001477 ORTHO05D001182 1.1e-07 62.0 194 27.8
TAR629G2777 Trochodendron aralioides HOM05D003087 ORTHO05D003312 2.5e-07 60.8 138 34.1
TPR.G7928 Trifolium pratense HOM05D001477 ORTHO05D001182 3.2e-07 60.5 254 29.1
CSS0028141 Camellia sinensis var. sinensis HOM05D001477 ORTHO05D001182 4.2e-07 60.1 278 25.9
Ciclev10027565m.g Citrus clementina HOM05D001477 ORTHO05D001182 4.2e-07 60.1 302 24.8
SGA_v2.0_scaffold286G47138 Striga asiatica HOM05D005930 ORTHO05D003423 5.5e-07 59.7 299 23.1
EL10Ac9g21149 Beta vulgaris HOM05D001477 ORTHO05D001182 7.2e-07 59.3 297 23.2
PGSC0003DMG400010328 Solanum tuberosum HOM05D000576 ORTHO05D000368 7.2e-07 59.3 163 30.7
PGSC0003DMG400017941 Solanum tuberosum HOM05D000576 ORTHO05D000368 7.2e-07 59.3 163 30.7
PGSC0003DMG400005616 Solanum tuberosum HOM05D009966 ORTHO05D012083 1.2e-06 58.5 262 27.1
Medtr2g100570 Medicago truncatula HOM05D001477 ORTHO05D001182 1.6e-06 58.2 296 22.6
arahy.Tifrunner.gnm1.ann1.50R0Y8 Arachis hypogaea HOM05D001477 ORTHO05D001182 2.1e-06 57.8 242 27.3
ClCG07G013570 Citrullus lanatus HOM05D001477 ORTHO05D001182 2.1e-06 57.8 280 23.6
arahy.Tifrunner.gnm1.ann1.W4II7B Arachis hypogaea HOM05D001477 ORTHO05D001182 3.6e-06 57.0 332 24.7
Aqoxy5G04063 Aquilegia oxysepala HOM05D000576 ORTHO05D000368 4.6e-06 56.6 173 30.1
TPR.G578 Trifolium pratense HOM05D001477 ORTHO05D001182 4.6e-06 56.6 242 29.8
SalBow2G0313 Salvia bowleyana HOM05D007834 ORTHO05D003423 6.1e-06 56.2 238 26.5
SGA_v2.0_scaffold37G14882 Striga asiatica HOM05D005930 ORTHO05D003423 6.1e-06 56.2 183 29.5
HanXRQChr15g0470321 Helianthus annuus HOM05D001477 ORTHO05D001182 7.9e-06 55.8 294 22.4


User provided reference genes

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