Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 2.6e-87 325.5 177 100.0
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 4.7e-81 304.7 177 85.9
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 2.0e-79 299.3 177 90.4
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 2.6e-79 298.9 177 84.2
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.6e-79 298.9 177 84.2
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 9.8e-79 297.0 177 83.6
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.7e-78 296.2 177 83.6
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.7e-75 286.2 177 81.4
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 5.6e-74 281.2 179 81.6
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 7.3e-74 280.8 177 80.2
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 7.3e-74 280.8 174 83.9
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 9.5e-74 280.4 177 81.4
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 2.8e-73 278.9 178 82.0
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 2.8e-73 278.9 177 80.8
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 3.6e-73 278.5 176 79.5
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 3.6e-73 278.5 179 80.4
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 6.1e-73 277.7 179 81.0
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 1.4e-72 276.6 178 78.7
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.4e-72 276.6 179 79.9
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 1.8e-72 276.2 177 78.5
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 3.1e-72 275.4 178 79.8
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 6.8e-72 274.2 177 79.1
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 1.2e-71 273.5 177 78.0
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 2.6e-71 272.3 178 78.7
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 3.4e-71 271.9 180 78.9
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 4.4e-71 271.6 177 77.4
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 7.5e-71 270.8 170 81.2
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.3e-70 270.0 177 78.0
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 1.7e-70 269.6 177 78.5
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 1.7e-70 269.6 177 78.5
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 2.9e-70 268.9 177 78.0
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 2.9e-70 268.9 179 78.2
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 3.7e-70 268.5 173 78.6
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 6.4e-70 267.7 182 78.6
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 6.4e-70 267.7 177 77.4
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 8.3e-70 267.3 179 77.1
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 8.3e-70 267.3 179 77.1
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.4e-69 266.5 177 78.0
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 1.4e-69 266.5 177 78.0
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.9e-69 266.2 177 78.5
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 2.4e-69 265.8 166 80.7
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 2.4e-69 265.8 177 77.4
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 3.2e-69 265.4 181 79.6
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 3.2e-69 265.4 179 77.7
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 1.6e-68 263.1 180 75.0
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 2.0e-68 262.7 182 76.4
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 3.5e-68 261.9 176 76.1
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 3.5e-68 261.9 163 83.4
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 4.6e-68 261.5 182 78.6
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 6.0e-68 261.2 181 76.8
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 6.0e-68 261.2 181 76.8
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 7.8e-68 260.8 177 74.6
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 7.8e-68 260.8 183 74.3
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.0e-67 260.4 178 75.8
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.0e-67 260.4 178 75.8
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 1.7e-67 259.6 177 75.1
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 2.3e-67 259.2 172 76.2
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.9e-67 258.5 178 75.3
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 3.9e-67 258.5 182 80.2
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 5.0e-67 258.1 180 73.9
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 5.0e-67 258.1 180 73.9
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 5.0e-67 258.1 181 75.7
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 6.6e-67 257.7 173 76.9
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 8.6e-67 257.3 180 73.3
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 8.6e-67 257.3 175 74.9
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 1.1e-66 256.9 180 73.3
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 1.1e-66 256.9 180 73.3
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 1.5e-66 256.5 178 74.2
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.9e-66 256.1 174 75.9
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 3.3e-66 255.4 173 76.3
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 4.3e-66 255.0 181 81.2
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 7.3e-66 254.2 184 79.3
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 7.3e-66 254.2 173 76.3
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 9.5e-66 253.8 179 74.3
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 9.5e-66 253.8 185 73.0
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.2e-65 253.4 174 76.4
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 1.6e-65 253.1 177 72.9
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.6e-65 253.1 180 76.1
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 2.1e-65 252.7 172 72.7
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 2.8e-65 252.3 177 71.2
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 2.8e-65 252.3 178 74.7
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 4.7e-65 251.5 174 75.3
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 6.2e-65 251.1 176 75.6
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 1.1e-64 250.4 178 80.9
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 1.4e-64 250.0 174 73.6
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 1.4e-64 250.0 189 76.2
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 1.8e-64 249.6 183 79.2
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 1.8e-64 249.6 173 72.3
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 2.3e-64 249.2 179 73.2
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 2.3e-64 249.2 173 72.3
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 5.2e-64 248.1 178 72.5
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 6.8e-64 247.7 173 74.0
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 8.9e-64 247.3 174 71.3
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 5.8e-63 244.6 184 79.9
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 5.8e-63 244.6 171 80.7
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 9.8e-63 243.8 168 80.4
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 9.8e-63 243.8 179 70.9
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 9.8e-63 243.8 179 70.9
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 9.8e-63 243.8 178 70.2
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 9.8e-63 243.8 178 70.2
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 1.3e-62 243.4 184 77.2
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 6.4e-62 241.1 178 73.6
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 8.3e-62 240.7 173 69.9
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 2.4e-61 239.2 178 73.0
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 3.2e-61 238.8 178 70.8
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 5.4e-61 238.0 177 67.2
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 1.6e-60 236.5 180 74.4
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 2.7e-60 235.7 179 68.7
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 1.0e-59 233.8 180 73.9
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 1.3e-59 233.4 178 69.1
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 1.7e-59 233.0 182 67.6
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 1.7e-59 233.0 172 69.8
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 3.0e-59 232.3 169 70.4
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 6.6e-59 231.1 173 68.2
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.5e-58 229.9 172 69.2
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 4.3e-58 228.4 138 79.7
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 5.6e-58 228.0 178 67.4
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 5.6e-58 228.0 178 66.9
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.2e-57 226.9 172 65.1
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 1.6e-57 226.5 132 87.1
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 2.8e-57 225.7 170 68.2
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 3.6e-57 225.3 172 64.5
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 1.8e-56 223.0 179 64.2
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 6.8e-56 221.1 183 72.1
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 6.8e-56 221.1 134 81.3
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 3.4e-55 218.8 179 64.8
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 1.7e-54 216.5 154 76.6
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 4.9e-54 214.9 248 51.6
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 1.2e-52 210.3 174 60.9
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 1.7e-51 206.5 184 62.5
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 1.5e-50 203.4 121 81.0
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 2.8e-49 199.1 125 71.2
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 8.9e-48 194.1 127 71.7
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 2.6e-47 192.6 126 72.2
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 2.6e-47 192.6 176 61.9
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 1.1e-45 187.2 127 69.3
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 1.4e-45 186.8 133 67.7
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 9.3e-45 184.1 134 70.1
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 1.6e-44 183.3 180 61.7
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.1e-37 160.6 89 85.4
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.3e-35 152.9 86 84.9
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 3.9e-35 152.1 179 48.0
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.5e-34 150.2 82 85.4
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 4.3e-34 148.7 176 48.9
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 6.2e-33 144.8 89 82.0
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 5.8e-31 138.3 112 67.0
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 4.9e-30 135.2 118 66.1
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 1.4e-29 133.7 108 66.7
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 4.2e-29 132.1 131 57.3
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 9.3e-29 131.0 97 70.1
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 4.8e-25 118.6 124 51.6
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.1e-24 117.5 84 70.2
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 4.5e-23 112.1 125 45.6
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 2.5e-21 106.3 79 70.9
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 2.5e-21 106.3 79 70.9
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 4.2e-21 105.5 105 44.8
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 2.3e-19 99.8 90 57.8
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 8.2e-17 91.3 120 39.2
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.3e-14 84.0 46 84.8
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 2.7e-12 76.3 65 61.5
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 6.1e-12 75.1 79 51.9
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 1.0e-11 74.3 89 39.3
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 1.9e-10 70.1 86 47.7
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 6.3e-09 65.1 136 36.8
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.2e-07 60.8 56 58.9
Cc01_g11080 Coffea canephora HOM05D004222 ORTHO05D154025 3.8e-06 55.8 109 40.4


User provided reference genes

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