Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 2.9e-73 278.5 144 100.0
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 6.5e-73 277.3 144 99.3
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 8.6e-65 250.4 133 97.7
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 1.1e-64 250.0 131 98.5
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 2.6e-61 238.8 131 93.9
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 4.9e-60 234.6 124 98.4
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 2.7e-58 228.8 143 83.9
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 4.5e-58 228.0 130 90.0
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 1.0e-57 226.9 130 90.0
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 8.6e-57 223.8 131 87.0
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 4.3e-56 221.5 150 80.7
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 5.6e-56 221.1 131 85.5
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 5.6e-56 221.1 131 85.5
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 5.6e-56 221.1 121 90.1
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 9.5e-56 220.3 131 85.5
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.2e-55 219.9 121 90.1
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.1e-55 219.2 131 84.7
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 2.1e-55 219.2 121 90.1
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 2.8e-55 218.8 121 89.3
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 2.8e-55 218.8 121 89.3
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 2.8e-55 218.8 121 89.3
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 4.7e-55 218.0 121 90.1
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 4.7e-55 218.0 121 89.3
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 4.7e-55 218.0 121 89.3
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 6.1e-55 217.6 121 89.3
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 6.1e-55 217.6 142 83.1
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 8.0e-55 217.2 121 88.4
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 8.0e-55 217.2 121 87.6
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 1.0e-54 216.9 121 89.3
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 1.0e-54 216.9 121 87.6
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 1.4e-54 216.5 121 89.3
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 1.4e-54 216.5 121 88.4
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 3.0e-54 215.3 121 89.3
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 3.0e-54 215.3 120 88.3
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 5.2e-54 214.5 121 86.8
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 5.2e-54 214.5 121 86.0
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 5.2e-54 214.5 121 86.0
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 8.9e-54 213.8 121 86.8
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 8.9e-54 213.8 121 88.4
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 8.9e-54 213.8 121 88.4
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 8.9e-54 213.8 121 86.8
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 1.2e-53 213.4 121 86.8
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 1.5e-53 213.0 121 86.0
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 2.6e-53 212.2 121 86.8
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 2.6e-53 212.2 121 86.0
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 3.4e-53 211.8 121 86.8
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 4.4e-53 211.5 121 86.8
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 7.5e-53 210.7 121 86.8
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 7.5e-53 210.7 121 86.8
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 9.8e-53 210.3 121 85.1
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 9.8e-53 210.3 121 86.8
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 9.8e-53 210.3 120 85.8
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 1.3e-52 209.9 132 80.3
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 1.3e-52 209.9 121 86.0
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 1.3e-52 209.9 121 87.6
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 1.7e-52 209.5 121 84.3
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 2.2e-52 209.1 132 80.3
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.2e-52 209.1 121 85.1
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 2.9e-52 208.8 126 82.5
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 2.9e-52 208.8 121 85.1
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 2.9e-52 208.8 121 85.1
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.9e-52 208.8 148 75.0
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 3.7e-52 208.4 121 86.8
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 3.7e-52 208.4 121 86.0
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.9e-52 208.0 148 75.0
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.9e-52 208.0 148 75.0
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.9e-52 208.0 121 84.3
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.9e-52 208.0 121 84.3
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 1.1e-51 206.8 121 86.8
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 1.4e-51 206.5 121 85.1
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 2.4e-51 205.7 121 84.3
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 3.2e-51 205.3 120 86.7
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 3.2e-51 205.3 121 82.6
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 4.1e-51 204.9 122 83.6
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 4.1e-51 204.9 121 85.1
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 5.4e-51 204.5 121 83.5
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 5.4e-51 204.5 121 84.3
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 9.2e-51 203.8 122 82.8
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 9.2e-51 203.8 121 84.3
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 1.2e-50 203.4 121 83.5
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 1.2e-50 203.4 121 83.5
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 2.0e-50 202.6 121 82.6
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 2.0e-50 202.6 121 84.3
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 2.0e-50 202.6 121 81.8
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 2.7e-50 202.2 121 85.1
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 6.0e-50 201.1 123 82.1
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 6.0e-50 201.1 121 83.5
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 6.0e-50 201.1 138 74.6
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 3.0e-49 198.7 134 76.1
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 3.0e-49 198.7 126 80.2
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 3.9e-49 198.4 121 80.2
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 8.6e-49 197.2 144 72.9
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 1.9e-48 196.1 159 66.7
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 5.6e-48 194.5 121 79.3
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 5.6e-48 194.5 121 79.3
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 5.6e-48 194.5 121 79.3
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 5.6e-48 194.5 121 79.3
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 5.6e-48 194.5 121 79.3
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 7.3e-48 194.1 121 78.5
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.2e-47 193.4 121 78.5
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 1.2e-47 193.4 121 79.3
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 1.2e-47 193.4 121 79.3
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 1.6e-47 193.0 105 89.5
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 2.1e-47 192.6 121 77.7
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 3.6e-47 191.8 121 78.5
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 3.6e-47 191.8 104 89.4
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 4.7e-47 191.4 121 77.7
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 4.7e-47 191.4 122 79.5
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 6.2e-47 191.0 104 90.4
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 6.2e-47 191.0 104 89.4
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 8.0e-47 190.7 104 89.4
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 8.0e-47 190.7 125 76.0
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 1.1e-46 190.3 121 77.7
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 1.1e-46 190.3 121 77.7
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 2.3e-46 189.1 121 77.7
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.1e-46 188.7 121 76.9
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 4.0e-46 188.3 104 88.5
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 5.2e-46 188.0 144 69.4
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 6.8e-46 187.6 122 77.0
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 8.9e-46 187.2 121 77.7
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 8.9e-46 187.2 121 73.6
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 1.5e-45 186.4 126 73.8
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 1.5e-45 186.4 125 73.6
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 2.6e-45 185.7 100 90.0
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 5.8e-45 184.5 121 71.9
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 9.8e-45 183.7 103 86.4
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 6.4e-44 181.0 97 90.7
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 8.3e-44 180.6 122 71.3
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 8.3e-44 180.6 103 86.4
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 3.5e-42 175.3 117 74.4
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 4.6e-42 174.9 104 81.7
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 6.0e-42 174.5 121 70.2
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 7.8e-42 174.1 104 81.7
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 1.0e-41 173.7 106 82.1
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 3.9e-41 171.8 92 91.3
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 1.1e-40 170.2 124 63.7
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 1.5e-40 169.9 104 79.8
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 1.9e-40 169.5 112 75.0
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 1.6e-39 166.4 192 51.0
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.1e-39 166.0 104 83.7
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 4.0e-38 161.8 122 70.5
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 5.4e-35 151.4 90 83.3
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 1.6e-34 149.8 81 84.0
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 2.1e-34 149.4 97 76.3
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 7.8e-34 147.5 79 86.1
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 3.0e-33 145.6 83 86.7
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 4.0e-30 135.2 112 60.7
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 2.2e-28 129.4 102 62.7
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 9.2e-27 124.0 93 67.7
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.2e-26 123.6 73 86.3
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 7.8e-26 120.9 82 70.7
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 2.3e-25 119.4 103 62.1
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 9.0e-22 107.5 74 68.9
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.2e-18 97.1 64 71.9
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 8.7e-17 90.9 65 70.8
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 2.1e-15 86.3 45 84.4
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 2.8e-15 85.9 49 87.8
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 2.8e-15 85.9 49 87.8
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 6.9e-14 81.3 110 50.0
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 2.0e-13 79.7 114 41.2
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 1.7e-12 76.6 116 37.1
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 2.4e-11 72.8 106 39.6


User provided reference genes

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