Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 0.0e+00 1281.9 638 100.0
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 3.1e-276 954.9 633 77.6
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 6.3e-253 877.5 637 71.0
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 2.1e-248 862.4 637 68.8
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.4e-244 849.7 661 66.4
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.0e-242 843.6 639 67.8
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.0e-235 819.3 655 65.5
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 1.5e-206 723.4 632 60.9
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 6.4e-205 718.0 639 60.4
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.0e-202 710.7 567 65.8
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 1.9e-196 689.9 630 57.9
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 7.4e-193 677.9 647 56.4
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 9.6e-193 677.6 632 58.1
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 1.5e-190 670.2 644 55.6
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 8.4e-189 664.5 686 53.4
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 4.2e-188 662.1 638 56.1
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 2.3e-186 656.4 640 55.2
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 1.9e-185 653.3 640 55.5
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 7.4e-185 651.4 621 55.9
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 9.6e-185 651.0 643 54.4
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 1.6e-184 650.2 643 56.3
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.1e-183 647.5 582 59.6
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 6.9e-183 644.8 633 55.5
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 3.2e-180 636.0 613 54.6
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 7.9e-179 631.3 623 55.7
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 1.9e-177 626.7 638 53.0
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 1.9e-177 626.7 638 53.0
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 2.5e-177 626.3 623 55.5
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 4.3e-177 625.5 638 52.7
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 1.3e-176 624.0 638 52.7
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 1.3e-176 624.0 638 53.0
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 8.5e-173 611.3 655 52.7
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 2.1e-171 606.7 617 53.5
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 1.1e-169 600.9 665 50.4
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 1.5e-169 600.5 623 52.2
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 1.5e-169 600.5 623 52.2
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 1.3e-168 597.4 645 51.3
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 1.8e-167 593.6 655 51.8
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 2.4e-167 593.2 626 52.4
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 3.4e-166 589.3 656 51.7
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 1.0e-165 587.8 657 50.2
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 3.8e-165 585.9 656 50.9
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 5.0e-165 585.5 631 51.5
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 1.4e-164 583.9 653 50.5
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 2.7e-163 579.7 629 50.6
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 3.0e-162 576.2 657 50.1
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 1.5e-161 573.9 640 51.1
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 4.4e-161 572.4 657 49.6
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 1.4e-159 567.4 624 50.6
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 4.5e-158 562.4 620 49.7
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.3e-157 560.8 593 53.3
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 1.3e-157 560.8 643 49.5
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 1.9e-156 557.0 642 49.4
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 9.4e-156 554.7 672 47.6
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 2.9e-149 533.1 614 47.2
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 3.8e-149 532.7 588 50.2
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 3.8e-149 532.7 641 46.3
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 1.2e-147 527.7 629 46.4
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 3.6e-147 526.2 605 47.8
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 4.7e-147 525.8 587 49.2
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.8e-146 523.9 579 48.9
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 1.8e-146 523.9 589 48.4
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 2.3e-146 523.5 618 47.1
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 4.0e-146 522.7 620 48.4
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 8.8e-146 521.5 620 46.1
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 1.2e-145 521.2 604 47.2
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 2.0e-145 520.4 603 47.9
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 3.3e-145 519.6 633 46.0
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 2.8e-144 516.5 593 47.6
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 2.8e-144 516.5 593 47.6
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 4.8e-144 515.8 523 54.5
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 8.2e-144 515.0 608 47.2
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 1.4e-143 514.2 655 45.8
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 4.1e-143 512.7 575 48.2
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 4.1e-143 512.7 603 48.1
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 5.3e-143 512.3 606 46.7
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 5.9e-142 508.8 601 47.1
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 1.0e-141 508.1 596 47.5
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 3.8e-141 506.1 566 48.1
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 8.5e-141 505.0 581 47.5
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.5e-140 504.2 711 43.0
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 3.2e-140 503.1 615 47.0
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 9.4e-140 501.5 609 47.0
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 1.2e-139 501.1 599 49.9
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 2.7e-139 500.0 596 47.7
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 4.7e-139 499.2 615 45.5
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 1.0e-138 498.0 637 44.6
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 5.7e-137 492.3 536 51.7
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 2.2e-136 490.3 702 43.2
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 2.2e-136 490.3 578 47.1
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 3.7e-136 489.6 578 46.7
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 6.3e-136 488.8 628 44.9
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 1.4e-135 487.6 574 46.5
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 1.4e-135 487.6 574 46.5
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 3.1e-135 486.5 601 46.1
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 2.0e-134 483.8 580 46.2
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 2.7e-134 483.4 576 46.7
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 2.7e-134 483.4 584 46.1
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 5.9e-134 482.3 604 45.7
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 4.7e-131 472.6 500 52.4
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 6.1e-131 472.2 327 72.8
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 2.6e-129 466.8 667 43.3
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 1.4e-127 461.1 504 49.8
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 5.0e-125 452.6 639 43.7
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 8.6e-125 451.8 616 42.4
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 7.3e-124 448.7 648 41.8
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 1.4e-122 444.5 629 43.9
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 9.2e-119 431.8 637 41.4
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 4.4e-113 412.9 601 41.8
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 6.0e-102 375.9 502 45.6
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 5.6e-100 369.4 472 44.3
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 9.9e-97 358.6 390 49.7
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 1.4e-95 354.8 466 45.1
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 7.1e-95 352.4 457 45.5
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 1.2e-91 341.7 544 36.8
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 1.8e-90 337.8 370 52.2
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 2.1e-83 314.3 453 40.4
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 6.2e-83 312.8 351 47.6
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 1.6e-78 298.1 609 34.2
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 5.6e-76 289.7 609 31.9
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 9.0e-74 282.3 659 30.3
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.2e-72 277.7 225 64.0
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 4.9e-72 276.6 455 38.9
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 4.3e-68 263.5 189 73.0
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 6.2e-67 259.6 391 40.4
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 6.9e-66 256.1 337 46.3
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 2.2e-64 251.1 459 35.5
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 1.1e-63 248.8 185 67.0
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 1.9e-60 238.0 321 46.4
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 6.9e-58 229.6 394 34.8
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 3.4e-57 227.3 225 56.0
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 7.9e-54 216.1 282 44.0
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 3.3e-52 210.7 132 75.0
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 7.4e-52 209.5 174 62.1
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 3.7e-51 207.2 173 57.8
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 5.9e-49 199.9 344 39.5
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 6.1e-46 189.9 245 46.1
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 3.9e-45 187.2 163 60.1
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 3.3e-44 184.1 287 40.4
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 8.2e-43 179.5 163 58.3
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 1.4e-42 178.7 195 50.8
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 8.5e-40 169.5 153 59.5
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 8.5e-40 169.5 153 59.5
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 1.1e-36 159.1 154 55.2
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 2.0e-36 158.3 153 56.2
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 4.1e-34 150.6 150 56.0
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 8.3e-27 126.3 131 45.0
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 7.0e-26 123.2 71 91.5
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 1.2e-25 122.5 273 31.9
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 1.2e-22 112.5 316 28.8
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 1.6e-22 112.1 158 44.9
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 6.8e-21 106.7 99 54.5
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 2.6e-20 104.8 115 47.0
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 4.4e-20 104.0 300 27.0
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 5.7e-20 103.6 80 58.8
Glyma.17G000200 Glycine max HOM05D003758 ORTHO05D004344 9.8e-20 102.8 118 51.7
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.3e-19 102.4 206 35.9
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 1.2e-17 95.9 132 41.7
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 4.2e-15 87.4 87 46.0
CSS0008641 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 8.3e-11 73.2 57 70.2
SEGI_18930 Sequoiadendron giganteum HOM05D003758 ORTHO05D004344 1.2e-09 69.3 236 26.3
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 2.7e-09 68.2 49 63.3
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 3.9e-08 64.3 152 28.9
Actinidia00830 Actinidia chinensis HOM05D003758 ORTHO05D004344 4.7e-06 57.4 42 59.5


User provided reference genes

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