Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G009900 Prunus persica HOM05D004127 ORTHO05D005119 3.9e-68 261.5 153 100.0
Prupe.3G010400 Prunus persica HOM05D004127 ORTHO05D005119 2.3e-52 209.1 128 98.4
MD09G1284400 Malus domestica HOM05D004127 ORTHO05D005119 1.7e-39 166.4 128 68.8
RcHm_v2.0_Chr3g0487361 Rosa chinensis HOM05D004127 ORTHO05D005119 2.9e-34 149.1 131 63.4
FAN28G2982 Fragaria x ananassa HOM05D004127 ORTHO05D005119 1.0e-31 140.6 129 62.0
FAN26G0855 Fragaria x ananassa HOM05D004127 ORTHO05D005119 1.7e-31 139.8 132 61.4
FAN23G1564 Fragaria x ananassa HOM05D004127 ORTHO05D005119 3.9e-31 138.7 129 62.0
FvH4_1g27040 Fragaria vesca HOM05D004127 ORTHO05D005119 8.0e-29 131.0 128 58.6
FAN19G1378 Fragaria x ananassa HOM05D004127 ORTHO05D005119 1.2e-27 127.1 128 57.0
PGR083G1839 Punica granatum HOM05D004127 ORTHO05D005119 2.3e-23 112.8 129 51.9
CsaV3_7G030080 Cucumis sativus L. HOM05D004127 ORTHO05D005119 3.0e-23 112.5 130 50.0
ClCG09G004980 Citrullus lanatus HOM05D004127 ORTHO05D005119 8.6e-23 110.9 134 50.0
CANSAT25G0729 Cannabis sativa HOM05D004127 ORTHO05D005119 1.9e-22 109.8 131 48.1
MELO3C015913.2 Cucumis melo HOM05D004127 ORTHO05D005119 2.1e-21 106.3 130 48.5
TWI75G0020 Tripterygium wilfordii HOM05D004127 ORTHO05D005119 2.1e-21 106.3 130 46.2
Ciclev10018807m.g Citrus clementina HOM05D004127 ORTHO05D005119 2.0e-19 99.8 144 43.8
THA.LOC104809612 Tarenaya hassleriana HOM05D004127 ORTHO05D005119 2.0e-19 99.8 129 45.7
Sed0018206 Sechium edule HOM05D004127 ORTHO05D005119 3.4e-19 99.0 134 45.5
Cpa.g.sc18.78 Carica papaya HOM05D004127 ORTHO05D005119 1.3e-18 97.1 150 40.0
GSVIVG01028141001 Vitis vinifera HOM05D004127 ORTHO05D005119 1.9e-17 93.2 130 42.3
Dinv10119 Davidia involucrata HOM05D004127 ORTHO05D005119 3.2e-17 92.4 136 39.7
QL12p019388 Quercus lobata HOM05D004127 ORTHO05D005119 5.4e-17 91.7 129 48.8
Manes.01G229400 Manihot esculenta HOM05D004127 ORTHO05D005119 2.7e-16 89.4 135 42.2
Nn4g25565 Nelumbo nucifera HOM05D004127 ORTHO05D005119 3.5e-16 89.0 126 42.1
Aa31LG1G8250 Aethionema arabicum HOM05D004127 ORTHO05D005119 4.6e-16 88.6 145 45.5
THA.LOC104819204 Tarenaya hassleriana HOM05D004127 ORTHO05D005119 3.9e-15 85.5 132 47.0
Dinv33130 Davidia involucrata HOM05D004127 ORTHO05D005119 6.6e-15 84.7 104 45.2
Manes.05G014100 Manihot esculenta HOM05D004127 ORTHO05D005119 8.6e-15 84.3 135 40.7
TAR633G0666 Trochodendron aralioides HOM05D004127 ORTHO05D005119 8.6e-15 84.3 128 40.6
Actinidia25862 Actinidia chinensis HOM05D004127 ORTHO05D005119 1.1e-14 84.0 71 57.7
CiPaw.08G088200 Carya illinoinensis HOM05D004127 ORTHO05D005119 1.9e-14 83.2 133 51.9
Thhalv10006755m.g Eutrema salsugineum HOM05D004127 ORTHO05D005119 2.5e-14 82.8 67 59.7
Potri.014G118500 Populus trichocarpa HOM05D004127 ORTHO05D005119 3.3e-14 82.4 135 44.4
Sabra14G0088000 Salix brachista HOM05D004127 ORTHO05D005119 4.3e-14 82.0 136 41.9
Cfa005772 Carpinus fangiana HOM05D004127 ORTHO05D005119 5.6e-14 81.6 152 50.0
Sabra02G0162500 Salix brachista HOM05D004127 ORTHO05D005119 9.5e-14 80.9 139 44.6
TAR362G1247 Trochodendron aralioides HOM05D004127 ORTHO05D005119 2.1e-13 79.7 128 39.8
AL4G26650 Arabidopsis lyrata HOM05D004127 ORTHO05D005119 4.7e-13 78.6 64 59.4
Migut.D00068 Erythranthe guttata HOM05D004127 ORTHO05D005119 4.7e-13 78.6 130 47.7
Potri.002G193900 Populus trichocarpa HOM05D004127 ORTHO05D005119 1.4e-12 77.0 135 41.5
Actinidia17915 Actinidia chinensis HOM05D004127 ORTHO05D005119 1.8e-12 76.6 135 40.7
Actinidia21391 Actinidia chinensis HOM05D004127 ORTHO05D005119 1.8e-12 76.6 130 45.4
Haze_05068 Corylus avellana HOM05D004127 ORTHO05D005119 1.8e-12 76.6 154 52.6
Nn3g21732 Nelumbo nucifera HOM05D004127 ORTHO05D005119 2.3e-12 76.3 128 37.5
Sed0015183 Sechium edule HOM05D004127 ORTHO05D005119 5.2e-12 75.1 128 38.3
AT2G31400 Arabidopsis thaliana HOM05D004127 ORTHO05D005119 6.8e-12 74.7 64 57.8
Aqoxy2G02720 Aquilegia oxysepala HOM05D004127 ORTHO05D005119 8.9e-12 74.3 63 61.9
Lj2C1208T0 Lonicera japonica HOM05D004127 ORTHO05D005119 8.9e-12 74.3 69 55.1
CARHR125030 Cardamine hirsuta HOM05D004127 ORTHO05D005119 2.6e-11 72.8 66 57.6
Thecc.01G315900 Theobroma cacao HOM05D004127 ORTHO05D005119 2.6e-11 72.8 123 42.3
Thhalv10016252m.g Eutrema salsugineum HOM05D004127 ORTHO05D005119 4.4e-11 72.0 64 54.7
Carub.0004s1272 Capsella rubella HOM05D004127 ORTHO05D005119 5.8e-11 71.6 63 55.6
CiPaw.07G119200 Carya illinoinensis HOM05D004127 ORTHO05D005119 5.8e-11 71.6 64 60.9
Thhalv10016219m.g Eutrema salsugineum HOM05D004127 ORTHO05D005119 7.6e-11 71.2 64 57.8
Hund09649 Selenicereus undatus HOM05D004127 ORTHO05D005119 7.6e-11 71.2 67 53.7
CSS0010117 Camellia sinensis var. sinensis HOM05D004127 ORTHO05D005119 1.3e-10 70.5 70 54.3
Gohir.A12G123700 Gossypium hirsutum HOM05D004127 ORTHO05D005119 1.3e-10 70.5 125 48.0
Sopen06g004180 Solanum pennellii HOM05D004127 ORTHO05D005119 1.3e-10 70.5 139 35.3
MSTRG.18089 Avicennia marina HOM05D004127 ORTHO05D005119 2.2e-10 69.7 130 45.4
Lsat_1_v5_gn_9_4701 Lactuca sativa HOM05D004127 ORTHO05D005119 2.2e-10 69.7 131 35.9
PSO170G0800 Papaver somniferum HOM05D004127 ORTHO05D005119 2.2e-10 69.7 128 38.3
Sp4g13890 Schrenkiella parvula HOM05D004127 ORTHO05D005119 2.2e-10 69.7 63 57.1
Duzib138G0806 Durio zibethinus HOM05D004127 ORTHO05D005119 3.8e-10 68.9 124 46.8
PSO357G0209 Papaver somniferum HOM05D004127 ORTHO05D005119 3.8e-10 68.9 128 37.5
Rhsim13G0003800 Rhododendron simsii HOM05D004127 ORTHO05D005119 4.9e-10 68.6 128 53.1
vmacro02392 Vaccinium macrocarpon HOM05D004127 ORTHO05D005119 4.9e-10 68.6 65 56.9
COL.COLO4_23210 Corchorus olitorius HOM05D004127 ORTHO05D005119 8.4e-10 67.8 116 44.8
BcaC02g07981 Brassica carinata HOM05D004127 ORTHO05D005119 1.1e-09 67.4 64 59.4
A04p24290 Brassica napus HOM05D004127 ORTHO05D005119 1.1e-09 67.4 64 59.4
C04p61120 Brassica napus HOM05D004127 ORTHO05D005119 1.1e-09 67.4 64 59.4
BolC4t27597H Brassica oleracea HOM05D004127 ORTHO05D005119 1.1e-09 67.4 64 59.4
Cc01_g21590 Coffea canephora HOM05D004127 ORTHO05D005119 1.1e-09 67.4 63 60.3
Gohir.D12G127400 Gossypium hirsutum HOM05D004127 ORTHO05D005119 1.1e-09 67.4 125 54.4
Gorai.008G138300 Gossypium raimondii HOM05D004127 ORTHO05D005119 1.1e-09 67.4 125 54.4
MBI18_g03637_MAGBIO Magnolia biondii HOM05D004127 ORTHO05D005119 1.4e-09 67.0 137 38.7
ECA247G3842 Erigeron canadensis HOM05D004127 ORTHO05D005119 3.2e-09 65.9 59 52.5
SalBow3G1425 Salvia bowleyana HOM05D004127 ORTHO05D005119 4.1e-09 65.5 138 35.5
HanXRQChr10g0285041 Helianthus annuus HOM05D004127 ORTHO05D005119 1.2e-08 63.9 62 51.6
MSTRG.21699 Avicennia marina HOM05D004127 ORTHO05D005119 6.0e-08 61.6 50 58.0
BcaC02g11240 Brassica carinata HOM05D004127 ORTHO05D005119 6.0e-08 61.6 106 36.8
SGA_v2.0_scaffold334G49080 Striga asiatica HOM05D004127 ORTHO05D005119 6.0e-08 61.6 50 58.0
BraA05t20351Z Brassica rapa HOM05D004127 ORTHO05D005119 7.8e-08 61.2 122 35.2
BcaB02g10389 Brassica carinata HOM05D004127 ORTHO05D005119 1.0e-07 60.8 111 49.5
C04p18930 Brassica napus HOM05D004127 ORTHO05D005119 1.3e-07 60.5 110 37.3
BolC4t23423H Brassica oleracea HOM05D004127 ORTHO05D005119 1.3e-07 60.5 110 37.3
CDE08G0979 Ceratophyllum demersum HOM05D004127 ORTHO05D005119 1.3e-07 60.5 122 41.0
A05p14200 Brassica napus HOM05D004127 ORTHO05D005119 2.3e-07 59.7 110 37.3
Sc24g0004200 Simmondsia chinensis HOM05D004127 ORTHO05D005119 3.0e-07 59.3 67 46.3
Lj1g0020612 Lotus japonicus HOM05D004127 ORTHO05D005119 3.9e-07 58.9 58 53.4
Oeu058159.1 Olea europaea HOM05D004127 ORTHO05D005119 3.9e-07 58.9 135 37.0
BcaB06g28547 Brassica carinata HOM05D004127 ORTHO05D005119 6.6e-07 58.2 124 37.9
Peaxi162Scf00058g02410 Petunia axillaris HOM05D004127 ORTHO05D005119 8.6e-07 57.8 59 54.2
Gohir.D11G112800 Gossypium hirsutum HOM05D004127 ORTHO05D005119 1.9e-06 56.6 115 35.7
AUR62011779 Chenopodium quinoa HOM05D004127 ORTHO05D005119 5.6e-06 55.1 69 40.6
AUR62024623 Chenopodium quinoa HOM05D004127 ORTHO05D005119 5.6e-06 55.1 69 40.6
Nitab4.5_0007407g0040 Nicotiana tabacum HOM05D004127 ORTHO05D005119 7.3e-06 54.7 119 36.1


User provided reference genes

Program Settings