Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G314300 Prunus persica HOM05D005832 ORTHO05D007117 3.7e-97 358.6 240 100.0
MD07G1294700 Malus domestica HOM05D005832 ORTHO05D007117 1.8e-75 286.6 242 87.2
MD01G1223900 Malus domestica HOM05D005832 ORTHO05D007117 8.9e-75 284.3 239 87.9
RcHm_v2.0_Chr1g0381721 Rosa chinensis HOM05D005832 ORTHO05D007117 9.8e-74 280.8 240 86.7
FvH4_7g32120 Fragaria vesca HOM05D005832 ORTHO05D007117 3.2e-72 275.8 241 85.9
FAN06G2446 Fragaria x ananassa HOM05D005832 ORTHO05D007117 3.2e-72 275.8 241 85.9
CiPaw.06G044600 Carya illinoinensis HOM05D005832 ORTHO05D007117 2.7e-71 272.7 234 82.1
FAN10G0265 Fragaria x ananassa HOM05D005832 ORTHO05D007117 4.6e-71 271.9 241 85.5
Cfa016207 Carpinus fangiana HOM05D005832 ORTHO05D007117 7.8e-71 271.2 234 83.3
Haze_00242 Corylus avellana HOM05D005832 ORTHO05D007117 3.9e-70 268.9 234 82.9
Haze_00239 Corylus avellana HOM05D005832 ORTHO05D007117 1.5e-69 266.9 234 82.9
Dinv29254 Davidia involucrata HOM05D005832 ORTHO05D007117 2.5e-69 266.2 234 80.8
GSVIVG01038586001 Vitis vinifera HOM05D005832 ORTHO05D007117 9.5e-69 264.2 226 86.3
FAN10G0314 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.6e-68 263.5 244 84.0
Potri.012G018100 Populus trichocarpa HOM05D005832 ORTHO05D007117 1.1e-67 260.8 241 78.0
Atru.chr12.2262 Acer truncatum HOM05D005832 ORTHO05D007117 1.5e-66 256.9 236 81.8
Ciclev10021983m.g Citrus clementina HOM05D005832 ORTHO05D007117 1.5e-66 256.9 235 82.1
Eucgr.K00402 Eucalyptus grandis HOM05D005832 ORTHO05D007117 7.6e-66 254.6 251 67.3
TAR375G0053 Trochodendron aralioides HOM05D005832 ORTHO05D007117 1.3e-65 253.8 250 76.4
MBI18_g01156_MAGBIO Magnolia biondii HOM05D005832 ORTHO05D007117 6.4e-65 251.5 236 78.0
Peaxi162Scf00740g00233 Petunia axillaris HOM05D005832 ORTHO05D007117 1.9e-64 250.0 226 81.0
Sabra12G0014400 Salix brachista HOM05D005832 ORTHO05D007117 9.2e-64 247.7 237 77.6
ClCG05G009090 Citrullus lanatus HOM05D005832 ORTHO05D007117 1.2e-63 247.3 234 79.1
PGR142G2159 Punica granatum HOM05D005832 ORTHO05D007117 1.6e-63 246.9 242 77.7
QL09p007826 Quercus lobata HOM05D005832 ORTHO05D007117 1.6e-63 246.9 233 79.0
MELO3C019377.2 Cucumis melo HOM05D005832 ORTHO05D007117 6.0e-63 245.0 234 79.1
CsaV3_3G019700 Cucumis sativus L. HOM05D005832 ORTHO05D007117 7.8e-63 244.6 234 78.6
CANSAT21G0464 Cannabis sativa HOM05D005832 ORTHO05D007117 1.0e-62 244.2 241 76.3
CAN.G481.39 Capsicum annuum HOM05D005832 ORTHO05D007117 1.0e-62 244.2 234 76.9
Nn3g18931 Nelumbo nucifera HOM05D005832 ORTHO05D007117 1.0e-62 244.2 234 79.5
PGSC0003DMG400018522 Solanum tuberosum HOM05D005832 ORTHO05D007117 1.7e-62 243.4 234 77.4
Hma1.2p1_0591F.1_g185170 Hydrangea macrophylla HOM05D005832 ORTHO05D007117 5.1e-62 241.9 234 77.8
MSTRG.8527 Avicennia marina HOM05D005832 ORTHO05D007117 6.6e-62 241.5 236 77.1
AUR62035562 Chenopodium quinoa HOM05D005832 ORTHO05D007117 1.5e-61 240.4 236 77.1
Actinidia06134 Actinidia chinensis HOM05D005832 ORTHO05D007117 1.9e-61 240.0 237 75.9
Nitab4.5_0007100g0060 Nicotiana tabacum HOM05D005832 ORTHO05D007117 4.3e-61 238.8 235 76.2
Solyc03g082890.3 Solanum lycopersicum HOM05D005832 ORTHO05D007117 9.6e-61 237.7 234 76.5
Oeu010700.1 Olea europaea HOM05D005832 ORTHO05D007117 1.6e-60 236.9 234 76.9
Sopen03g022710 Solanum pennellii HOM05D005832 ORTHO05D007117 2.8e-60 236.1 234 76.1
TWI39G1154 Tripterygium wilfordii HOM05D005832 ORTHO05D007117 8.1e-60 234.6 206 84.5
Manes.01G039700 Manihot esculenta HOM05D005832 ORTHO05D007117 2.4e-59 233.0 236 76.3
Gohir.A09G185500 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.2e-59 231.9 232 77.2
Thecc.03G202400 Theobroma cacao HOM05D005832 ORTHO05D007117 2.6e-58 229.6 236 77.1
CDE09G0779 Ceratophyllum demersum HOM05D005832 ORTHO05D007117 3.4e-58 229.2 239 75.3
Oeu055193.1 Olea europaea HOM05D005832 ORTHO05D007117 1.3e-57 227.3 258 57.8
SalBow2G0471 Salvia bowleyana HOM05D005832 ORTHO05D007117 1.3e-57 227.3 226 77.9
Medtr3g491890 Medicago truncatula HOM05D005832 ORTHO05D007117 2.9e-57 226.1 239 75.3
Lj3A899T66 Lonicera japonica HOM05D005832 ORTHO05D007117 4.9e-57 225.3 143 78.3
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 5.4e-56 221.9 191 88.0
Psat5g075600 Pisum sativum HOM05D005832 ORTHO05D007117 5.4e-56 221.9 240 75.4
Cc02_g01260 Coffea canephora HOM05D005832 ORTHO05D007117 7.1e-56 221.5 243 72.8
Lj1g0002080 Lotus japonicus HOM05D005832 ORTHO05D007117 2.1e-55 219.9 237 74.7
Duzib084G1042 Durio zibethinus HOM05D005832 ORTHO05D007117 2.7e-55 219.5 234 75.2
EL10Ac3g05248 Beta vulgaris HOM05D005832 ORTHO05D007117 1.3e-54 217.2 238 63.9
Sed0026931 Sechium edule HOM05D005832 ORTHO05D007117 1.3e-54 217.2 241 74.3
HanXRQChr08g0225151 Helianthus annuus HOM05D005832 ORTHO05D007117 6.6e-54 214.9 232 75.0
Gorai.006G202400 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.1e-53 214.2 236 73.7
ATR0680G157 Amborella trichopoda HOM05D005832 ORTHO05D007117 4.3e-53 212.2 186 85.5
Sc25g0000950 Simmondsia chinensis HOM05D005832 ORTHO05D007117 4.3e-53 212.2 211 79.1
Phvul.009G050400 Phaseolus vulgaris HOM05D005832 ORTHO05D007117 5.6e-53 211.8 238 73.5
ECA233G1427 Erigeron canadensis HOM05D005832 ORTHO05D007117 3.6e-52 209.1 228 75.4
SGA_v2.0_scaffold125G33711 Striga asiatica HOM05D005832 ORTHO05D007117 3.6e-52 209.1 184 85.9
Ca_16726_v3 Cicer arietinum L. HOM05D005832 ORTHO05D007117 4.8e-52 208.8 240 73.3
Glyma.04G233500 Glycine max HOM05D005832 ORTHO05D007117 6.2e-52 208.4 239 73.6
Glyma.06G131300 Glycine max HOM05D005832 ORTHO05D007117 6.2e-52 208.4 238 74.4
vmacro10134 Vaccinium macrocarpon HOM05D005832 ORTHO05D007117 6.2e-52 208.4 219 74.9
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.1e-51 207.6 200 82.5
Gorai.013G219100 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.1e-51 207.6 258 49.6
COL.COLO4_16805 Corchorus olitorius HOM05D005832 ORTHO05D007117 1.4e-51 207.2 199 81.9
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.4e-51 207.2 199 82.9
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 1.4e-51 207.2 188 85.6
Aa31LG3G9660 Aethionema arabicum HOM05D005832 ORTHO05D007117 4.0e-51 205.7 245 68.6
arahy.Tifrunner.gnm1.ann1.26JPZN Arachis hypogaea HOM05D005832 ORTHO05D007117 4.0e-51 205.7 234 73.1
Migut.F01014 Erythranthe guttata HOM05D005832 ORTHO05D007117 4.0e-51 205.7 129 76.0
VMungo1309G1177 Vigna mungo HOM05D005832 ORTHO05D007117 4.0e-51 205.7 238 73.1
arahy.Tifrunner.gnm1.ann1.082NQD Arachis hypogaea HOM05D005832 ORTHO05D007117 5.3e-51 205.3 234 73.1
PSO170G4678 Papaver somniferum HOM05D005832 ORTHO05D007117 1.5e-50 203.8 200 82.0
Gorai.007G219400 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.0e-50 203.4 235 72.8
Lalb_Chr08g0240071 Lupinus albus HOM05D005832 ORTHO05D007117 2.0e-50 203.4 235 71.5
PSO063G3297 Papaver somniferum HOM05D005832 ORTHO05D007117 2.6e-50 203.0 241 71.4
Gorai.008G174000 Gossypium raimondii HOM05D005832 ORTHO05D007117 7.6e-50 201.4 235 73.2
unitig_578.g16672 Utricularia gibba HOM05D005832 ORTHO05D007117 7.6e-50 201.4 237 71.7
CSS0000669 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 9.9e-50 201.1 212 53.8
CSS0046458 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 9.9e-50 201.1 212 53.8
Thhalv10014535m.g Eutrema salsugineum HOM05D005832 ORTHO05D007117 1.3e-49 200.7 241 69.7
Sp6g15630 Schrenkiella parvula HOM05D005832 ORTHO05D007117 1.3e-49 200.7 242 69.4
Zm00001eb220820 Zea mays HOM05D005832 ORTHO05D007117 1.7e-49 200.3 205 80.0
Rhsim09G0206900 Rhododendron simsii HOM05D005832 ORTHO05D007117 2.9e-49 199.5 198 79.8
DCAR_020339 Daucus carota HOM05D005832 ORTHO05D007117 3.8e-49 199.1 197 81.2
Os10g0502000 Oryza sativa ssp. japonica HOM05D005832 ORTHO05D007117 3.8e-49 199.1 206 78.2
TPR.G33655 Trifolium pratense HOM05D005832 ORTHO05D007117 6.4e-49 198.4 197 79.7
HPP92_013004 Vanilla planifolia HOM05D005832 ORTHO05D007117 1.9e-48 196.8 184 83.2
BcaB08g35713 Brassica carinata HOM05D005832 ORTHO05D007117 2.4e-48 196.4 241 69.7
BcaC04g20449 Brassica carinata HOM05D005832 ORTHO05D007117 3.2e-48 196.1 241 68.9
BolC9t57215H Brassica oleracea HOM05D005832 ORTHO05D007117 3.2e-48 196.1 241 68.9
Gorai.004G199200 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.2e-48 196.1 200 64.5
C09p43330 Brassica napus HOM05D005832 ORTHO05D007117 7.1e-48 194.9 241 68.9
CARHR266630 Cardamine hirsuta HOM05D005832 ORTHO05D007117 7.1e-48 194.9 237 67.9
AT5G53490 Arabidopsis thaliana HOM05D005832 ORTHO05D007117 3.5e-47 192.6 242 68.6
A10p10930 Brassica napus HOM05D005832 ORTHO05D007117 1.3e-46 190.7 243 68.7
Carub.0008s1366 Capsella rubella HOM05D005832 ORTHO05D007117 1.3e-46 190.7 244 68.4
Gohir.D07G112932 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.3e-46 190.7 254 47.2
SEGI_24850 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 1.5e-45 187.2 188 80.3
BraA10t43184Z Brassica rapa HOM05D005832 ORTHO05D007117 4.3e-45 185.7 257 63.8
Gohir.D09G180400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.3e-44 184.1 234 69.7
FAN03G0720 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.6e-44 183.7 240 69.2
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 2.1e-44 183.3 110 80.9
Gohir.A10G001400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.1e-44 183.3 129 72.9
Gohir.A05G409400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.7e-44 182.6 129 72.9
Gohir.D01G203700 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.7e-44 182.6 129 72.9
Aqoxy6G02259 Aquilegia oxysepala HOM05D005832 ORTHO05D007117 1.4e-43 180.6 248 65.3
FAN01G1435 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.4e-43 180.6 157 94.3
Gohir.D02G154600 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.4e-43 179.9 129 71.3
Gohir.D03G118200 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.1e-43 179.5 129 69.8
Gohir.A13G227280 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.9e-43 178.3 129 71.3
Gohir.D11G247000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.5e-42 177.2 130 69.2
THA.LOC104799961 Tarenaya hassleriana HOM05D005832 ORTHO05D007117 5.8e-42 175.3 241 66.4
Pp3c23_22190 Physcomitrium patens HOM05D005832 ORTHO05D007117 1.3e-41 174.1 200 71.5
Gohir.A11G163501 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.6e-39 167.2 235 50.2
AL8G28210 Arabidopsis lyrata HOM05D005832 ORTHO05D007117 3.5e-39 166.0 166 84.9
Gohir.D12G161000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.5e-37 159.8 235 49.8
Duzib205G0233 Durio zibethinus HOM05D005832 ORTHO05D007117 1.4e-35 154.1 239 63.2
Mapoly0014s0126 Marchantia polymorpha HOM05D005832 ORTHO05D007117 4.5e-34 149.1 207 61.8
AagrBONN_evm.TU.Sc2ySwM_228.2510 Anthoceros agrestis HOM05D005832 ORTHO05D007117 1.3e-33 147.5 129 58.1
SMO111G0094 Selaginella moellendorffii HOM05D005832 ORTHO05D007117 2.7e-31 139.8 156 80.1
CBR_g40818 Chara braunii HOM05D005832 ORTHO05D007117 4.6e-31 139.0 105 65.7
Gorai.004G257600 Gossypium raimondii HOM05D005832 ORTHO05D007117 4.6e-31 139.0 77 87.0
SEGI_05976 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 3.1e-19 99.8 64 71.9
FAN01G3091 Fragaria x ananassa HOM05D005832 ORTHO05D007117 4.2e-16 89.4 100 59.0
Cpa.g.sc3.109 Carica papaya HOM05D005832 ORTHO05D007117 3.0e-14 83.2 77 57.1
Actinidia18663 Actinidia chinensis HOM05D005832 ORTHO05D007117 1.4e-11 74.3 116 76.7
Cre09.g404000 Chlamydomonas reinhardtii HOM05D005832 ORTHO05D007117 9.1e-11 71.6 157 42.7


User provided reference genes

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