Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 2.5e-47 191.8 100 100.0
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 4.0e-45 184.5 100 96.0
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 7.5e-44 180.3 100 95.0
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 1.7e-43 179.1 100 93.0
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 4.6e-41 171.0 100 89.0
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 3.0e-40 168.3 100 87.0
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 1.5e-39 166.0 102 87.3
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 1.9e-39 165.6 99 85.9
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 2.5e-39 165.2 100 87.0
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.2e-38 162.9 100 90.0
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 6.2e-38 160.6 100 84.0
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 1.8e-37 159.1 89 91.0
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 2.4e-37 158.7 104 81.7
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 2.4e-37 158.7 98 82.7
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 3.1e-37 158.3 104 82.7
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 4.0e-37 157.9 100 83.0
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 4.0e-37 157.9 95 84.2
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 4.0e-37 157.9 103 80.6
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 1.2e-36 156.4 100 84.0
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 2.0e-36 155.6 100 78.0
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 3.4e-36 154.8 100 83.0
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 4.4e-36 154.5 100 83.0
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 7.6e-36 153.7 86 88.4
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 9.9e-36 153.3 101 81.2
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 1.3e-35 152.9 96 80.2
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 1.7e-35 152.5 86 90.7
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 2.2e-35 152.1 98 80.6
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 2.9e-35 151.8 88 86.4
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 2.9e-35 151.8 86 87.2
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 3.8e-35 151.4 89 86.5
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 4.9e-35 151.0 97 77.3
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 6.4e-35 150.6 100 76.0
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 6.4e-35 150.6 85 88.2
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 1.9e-34 149.1 88 84.1
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 1.9e-34 149.1 85 94.1
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 1.9e-34 149.1 91 83.5
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 1.9e-34 149.1 97 80.4
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 2.4e-34 148.7 97 79.4
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 5.4e-34 147.5 92 81.5
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 5.4e-34 147.5 101 75.2
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 7.1e-34 147.1 103 73.8
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 9.2e-34 146.7 103 75.7
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 9.2e-34 146.7 89 83.1
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 1.2e-33 146.4 100 73.0
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.2e-33 146.4 88 84.1
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 1.2e-33 146.4 99 74.7
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 1.6e-33 146.0 100 78.0
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 1.6e-33 146.0 89 82.0
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 2.1e-33 145.6 100 78.0
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 2.1e-33 145.6 81 92.6
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 3.5e-33 144.8 96 77.1
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 4.6e-33 144.4 87 83.9
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 6.0e-33 144.1 95 76.8
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 1.3e-32 142.9 91 78.0
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 1.7e-32 142.5 92 79.3
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 2.3e-32 142.1 87 83.9
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 2.3e-32 142.1 87 83.9
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 2.3e-32 142.1 103 73.8
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 3.0e-32 141.7 98 74.5
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 3.9e-32 141.4 81 90.1
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 3.9e-32 141.4 81 90.1
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 3.9e-32 141.4 81 90.1
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 3.9e-32 141.4 101 75.2
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 5.1e-32 141.0 87 83.9
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 6.6e-32 140.6 100 76.0
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 6.6e-32 140.6 96 77.1
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 6.6e-32 140.6 98 73.5
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 6.6e-32 140.6 87 80.5
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 1.5e-31 139.4 80 86.2
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 1.9e-31 139.0 84 81.0
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 3.3e-31 138.3 88 79.5
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 3.3e-31 138.3 88 78.4
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 4.3e-31 137.9 104 72.1
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 5.6e-31 137.5 80 86.2
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 5.6e-31 137.5 108 74.1
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 1.3e-30 136.3 86 81.4
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 1.3e-30 136.3 81 85.2
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 1.3e-30 136.3 104 72.1
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 2.1e-30 135.6 95 75.8
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 2.8e-30 135.2 84 82.1
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 2.8e-30 135.2 84 82.1
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 3.6e-30 134.8 84 82.1
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 4.8e-30 134.4 81 82.7
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 1.1e-29 133.3 78 85.9
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.4e-29 132.9 81 85.2
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 1.8e-29 132.5 79 83.5
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.8e-29 132.5 88 79.5
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 2.4e-29 132.1 93 74.2
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 2.4e-29 132.1 95 69.5
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 3.1e-29 131.7 88 79.5
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 4.0e-29 131.3 95 70.5
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 6.9e-29 130.6 86 81.4
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 9.0e-29 130.2 81 85.2
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 9.0e-29 130.2 95 69.5
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 9.0e-29 130.2 81 84.0
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 2.0e-28 129.0 95 69.5
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 2.0e-28 129.0 95 69.5
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 2.0e-28 129.0 73 91.8
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 2.6e-28 128.6 95 67.4
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 2.6e-28 128.6 95 68.4
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 3.4e-28 128.3 95 68.4
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 4.4e-28 127.9 95 67.4
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 4.4e-28 127.9 95 67.4
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 4.4e-28 127.9 95 67.4
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 4.4e-28 127.9 95 69.5
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 7.6e-28 127.1 84 73.8
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 9.9e-28 126.7 78 83.3
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 1.3e-27 126.3 94 70.2
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 3.8e-27 124.8 81 72.8
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 3.8e-27 124.8 81 72.8
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 3.8e-27 124.8 81 72.8
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 3.8e-27 124.8 81 72.8
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 4.9e-27 124.4 91 69.2
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 4.9e-27 124.4 91 69.2
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 4.9e-27 124.4 91 69.2
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 6.4e-27 124.0 82 75.6
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 6.4e-27 124.0 81 81.5
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 6.4e-27 124.0 80 81.2
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 6.4e-27 124.0 78 84.6
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 1.1e-26 123.2 81 79.0
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 2.4e-26 122.1 82 74.4
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 1.2e-25 119.8 76 80.3
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 1.6e-25 119.4 74 83.8
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 2.7e-25 118.6 79 74.7
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 2.7e-25 118.6 79 74.7
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 2.7e-25 118.6 79 74.7
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 1.0e-24 116.7 83 67.5
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 3.0e-24 115.2 83 74.7
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 6.6e-24 114.0 76 76.3
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 1.9e-23 112.5 80 76.2
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 3.6e-22 108.2 73 78.1
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 6.9e-21 104.0 78 70.5
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 1.2e-20 103.2 72 79.2
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 5.8e-20 100.9 78 66.7
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 9.9e-20 100.1 88 56.8
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 4.2e-18 94.7 69 73.9
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 7.1e-18 94.0 77 63.6
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 4.6e-17 91.3 95 55.8
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 6.0e-17 90.9 58 77.6
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 7.9e-17 90.5 78 64.1
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 7.4e-15 84.0 56 73.2
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 7.4e-15 84.0 56 73.2
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 1.5e-12 76.3 51 68.6
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 3.4e-12 75.1 83 47.0
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 7.9e-09 63.9 40 80.0


User provided reference genes

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