Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 2.4e-293 1011.9 726 100.0
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 7.3e-96 355.9 801 37.6
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 1.2e-79 302.0 841 37.5
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 7.6e-61 239.6 823 32.2
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 1.8e-57 228.4 787 30.1
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 6.7e-49 199.9 794 30.4
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.1e-46 190.7 825 29.5
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.0e-45 188.3 797 29.5
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 5.1e-41 173.7 819 28.4
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.4e-38 165.6 786 29.1
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 2.4e-38 164.9 343 42.0
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 3.4e-37 161.0 397 37.5
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 7.7e-37 159.8 798 28.7
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 1.0e-33 149.4 824 28.2
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 6.7e-33 146.7 451 35.0
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 8.8e-33 146.4 401 35.4
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 5.7e-32 143.7 365 37.5
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.7e-31 141.0 814 26.8
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 6.3e-31 140.2 358 34.9
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 3.1e-30 137.9 386 33.2
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 2.6e-29 134.8 406 33.7
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 4.5e-29 134.0 404 33.7
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 7.7e-29 133.3 391 33.5
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 1.0e-28 132.9 410 32.4
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 1.3e-28 132.5 384 34.1
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 2.2e-28 131.7 821 27.5
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 2.9e-28 131.3 353 36.3
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 2.9e-28 131.3 817 27.5
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 6.5e-28 130.2 406 33.3
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 8.5e-28 129.8 405 32.3
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 1.1e-27 129.4 406 33.3
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 4.2e-27 127.5 421 34.2
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 1.6e-26 125.6 422 30.8
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 1.6e-26 125.6 409 34.0
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 4.7e-26 124.0 351 30.8
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 6.1e-26 123.6 374 31.0
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 8.0e-26 123.2 426 30.5
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 6.7e-25 120.2 349 35.2
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 6.7e-25 120.2 836 26.3
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 2.6e-24 118.2 371 35.6
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 2.6e-24 118.2 390 33.6
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 4.4e-24 117.5 403 31.0
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 4.4e-24 117.5 393 31.0
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 7.4e-24 116.7 402 31.6
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 7.4e-24 116.7 323 40.6
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 7.4e-24 116.7 733 30.2
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 1.3e-23 115.9 354 31.1
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 1.3e-23 115.9 279 35.1
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.7e-23 114.4 731 27.6
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 1.8e-22 112.1 375 33.3
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 2.6e-21 108.2 365 32.6
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 3.5e-21 107.8 359 32.0
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 4.5e-21 107.5 316 33.5
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 2.2e-20 105.1 379 29.8
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 8.5e-20 103.2 325 34.8
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 1.1e-19 102.8 330 31.8
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 1.1e-19 102.8 360 30.0
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 2.5e-19 101.7 525 28.8
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 3.2e-19 101.3 330 34.5
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 3.2e-19 101.3 273 44.0
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 4.2e-19 100.9 384 29.4
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 1.2e-18 99.4 419 29.8
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 1.2e-18 99.4 312 36.2
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 2.7e-18 98.2 411 29.7
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 2.7e-18 98.2 383 32.9
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 4.7e-18 97.4 397 30.0
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.8e-17 95.5 350 31.1
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 2.3e-17 95.1 467 27.0
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 2.3e-17 95.1 805 24.5
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 5.2e-17 94.0 583 26.4
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 1.2e-16 92.8 585 26.2
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.5e-16 92.4 411 29.4
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 1.5e-16 92.4 152 42.8
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.5e-16 92.4 754 26.5
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.5e-16 92.4 426 27.0
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 2.6e-16 91.7 303 35.3
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 3.3e-16 91.3 323 29.7
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 4.4e-16 90.9 349 30.7
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 5.7e-16 90.5 342 30.4
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 7.5e-16 90.1 342 30.4
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 7.5e-16 90.1 254 38.2
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 1.3e-15 89.4 358 30.2
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.7e-15 89.0 424 30.0
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 2.2e-15 88.6 304 29.9
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 4.8e-15 87.4 362 29.6
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 6.3e-15 87.0 346 30.6
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 6.3e-15 87.0 424 27.4
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 1.4e-14 85.9 403 28.5
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 1.4e-14 85.9 403 28.5
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 1.8e-14 85.5 421 28.0
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.8e-14 85.5 380 29.7
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 1.8e-14 85.5 161 44.1
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 1.8e-14 85.5 361 29.4
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 3.1e-14 84.7 783 25.0
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 3.1e-14 84.7 307 29.6
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 5.3e-14 84.0 382 27.7
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 5.3e-14 84.0 842 23.2
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 5.3e-14 84.0 358 30.4
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 7.0e-14 83.6 407 28.0
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 9.1e-14 83.2 333 30.0
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 1.2e-13 82.8 293 33.1
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.2e-13 82.8 306 30.4
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 1.6e-13 82.4 161 43.5
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 1.6e-13 82.4 301 28.2
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 1.6e-13 82.4 324 29.3
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 1.6e-13 82.4 303 30.0
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 1.6e-13 82.4 259 31.7
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 2.0e-13 82.0 187 40.1
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 2.0e-13 82.0 317 29.3
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 3.5e-13 81.3 187 40.1
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 4.5e-13 80.9 150 45.3
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 1.0e-12 79.7 413 32.2
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 5.0e-12 77.4 103 46.6
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 6.5e-12 77.0 361 30.5
Nitab4.5_0002721g0060 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.1e-11 76.3 110 49.1
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 1.5e-11 75.9 323 28.8
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.5e-11 75.9 117 45.3
SGA_v2.0_scaffold60G21043 Striga asiatica HOM05D004189 ORTHO05D004092 1.5e-11 75.9 247 30.4
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.9e-11 75.5 385 29.9
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 1.9e-11 75.5 287 30.3
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 3.2e-11 74.7 303 32.7
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 3.2e-11 74.7 235 36.2
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 4.2e-11 74.3 757 23.6
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 5.5e-11 73.9 254 28.3
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 7.2e-11 73.6 314 27.7
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 1.2e-10 72.8 810 24.2
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 1.6e-10 72.4 322 30.1
PSO782G3290 Papaver somniferum HOM05D057890 ORTHO05D004092 2.1e-10 72.0 271 31.7
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 6.1e-10 70.5 246 35.4
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 8.0e-10 70.1 296 31.4
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 1.0e-09 69.7 315 28.9
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.0e-09 69.7 277 27.4
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 1.4e-09 69.3 427 26.9
PSO478G0660 Papaver somniferum HOM05D057890 ORTHO05D004092 1.4e-09 69.3 231 33.3
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 1.8e-09 68.9 146 38.4
Sed0019460 Sechium edule HOM05D004189 ORTHO05D004092 4.0e-09 67.8 357 26.9
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 5.2e-09 67.4 486 25.1
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 6.8e-09 67.0 309 30.1
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 8.8e-09 66.6 294 31.3
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 1.3e-07 62.8 406 26.4
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 1.7e-07 62.4 270 27.4
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 1.7e-07 62.4 137 40.1
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 2.2e-07 62.0 314 26.4
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 3.7e-07 61.2 113 37.2
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 4.8e-07 60.8 466 24.7
Peaxi162Scf00234g00811 Petunia axillaris HOM05D004189 ORTHO05D004092 4.8e-07 60.8 104 42.3
SGA_v2.0_scaffold10G05341 Striga asiatica HOM05D026728 ORTHO05D004092 1.1e-06 59.7 68 42.6
SalBow4G1418 Salvia bowleyana HOM05D026728 ORTHO05D004092 1.4e-06 59.3 308 25.3
SalBow4G1950 Salvia bowleyana HOM05D026728 ORTHO05D004092 1.4e-06 59.3 308 25.3
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 9.1e-06 56.6 241 31.5


User provided reference genes

Program Settings