Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G292800 Prunus persica HOM05D003520 ORTHO05D003332 1.9e-232 808.9 441 100.0
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 2.0e-136 490.0 602 50.8
MD07G1267200 Malus domestica HOM05D003520 ORTHO05D003332 1.3e-135 487.3 605 51.1
RcHm_v2.0_Chr1g0377031 Rosa chinensis HOM05D016299 ORTHO05D003332 2.9e-63 246.9 346 49.1
Thecc.03G174900 Theobroma cacao HOM05D003520 ORTHO05D003332 1.9e-62 244.2 507 39.3
Ciclev10004647m.g Citrus clementina HOM05D003520 ORTHO05D003332 3.5e-61 240.0 524 36.1
CiPaw.03G105100 Carya illinoinensis HOM05D003520 ORTHO05D003332 8.7e-60 235.3 518 36.7
Duzib205G1602 Durio zibethinus HOM05D003520 ORTHO05D003332 8.7e-60 235.3 511 35.8
Gohir.A12G258600 Gossypium hirsutum HOM05D003520 ORTHO05D003332 6.2e-58 229.2 497 36.8
Gorai.008G278300 Gossypium raimondii HOM05D003520 ORTHO05D003332 1.1e-57 228.4 498 37.3
Cfa008307 Carpinus fangiana HOM05D003520 ORTHO05D003332 1.8e-57 227.6 504 35.7
Haze_13728 Corylus avellana HOM05D003520 ORTHO05D003332 5.3e-57 226.1 503 35.6
FvH4_7g29290 Fragaria vesca HOM05D016299 ORTHO05D003332 2.0e-56 224.2 392 43.1
FAN06G4500 Fragaria x ananassa HOM05D016299 ORTHO05D003332 4.5e-56 223.0 392 43.1
FAN01G0032 Fragaria x ananassa HOM05D016299 ORTHO05D003332 5.8e-56 222.6 391 43.0
FAN06G4083 Fragaria x ananassa HOM05D016299 ORTHO05D003332 1.3e-55 221.5 392 42.9
FAN10G1120 Fragaria x ananassa HOM05D016299 ORTHO05D003332 3.8e-55 219.9 392 42.9
FAN03G3032 Fragaria x ananassa HOM05D016299 ORTHO05D003332 4.2e-54 216.5 393 42.7
FAN03G2536 Fragaria x ananassa HOM05D016299 ORTHO05D003332 7.2e-54 215.7 393 42.7
Eucgr.K00243 Eucalyptus grandis HOM05D003520 ORTHO05D003332 3.3e-51 206.8 532 34.6
COL.COLO4_14291 Corchorus olitorius HOM05D003520 ORTHO05D003332 3.7e-50 203.4 640 29.4
Sabra12G0103700 Salix brachista HOM05D003520 ORTHO05D003332 1.1e-49 201.8 398 38.4
Gohir.D12G259800 Gossypium hirsutum HOM05D003520 ORTHO05D003332 2.6e-48 197.2 424 37.5
QL09p014562 Quercus lobata HOM05D003520 ORTHO05D003332 7.7e-48 195.7 471 36.1
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 7.7e-48 195.7 428 37.1
Potri.012G138300 Populus trichocarpa HOM05D003520 ORTHO05D003332 1.3e-47 194.9 401 37.9
Atru.chr1.477_Atru.chr1.478 Acer truncatum HOM05D003520 ORTHO05D003332 1.2e-45 188.3 495 34.3
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 1.6e-45 188.0 428 35.7
Phvul.004G117900 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 1.8e-44 184.5 496 34.7
VMungo0464G1159 Vigna mungo HOM05D003520 ORTHO05D003332 2.2e-42 177.6 504 31.7
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 1.8e-41 174.5 518 31.5
Sed0005114 Sechium edule HOM05D003520 ORTHO05D003332 3.1e-41 173.7 465 33.1
CsaV3_3G017000 Cucumis sativus L. HOM05D003520 ORTHO05D003332 5.3e-41 172.9 488 32.4
Glyma.16G194400 Glycine max HOM05D003520 ORTHO05D003332 1.3e-39 168.3 518 30.9
TAR375G0279 Trochodendron aralioides HOM05D003520 ORTHO05D003332 1.3e-39 168.3 455 31.0
ClCG05G007960 Citrullus lanatus HOM05D003520 ORTHO05D003332 1.4e-38 164.9 399 33.3
Dinv28454 Davidia involucrata HOM05D003520 ORTHO05D003332 2.5e-38 164.1 439 37.8
Glyma.09G140500 Glycine max HOM05D003520 ORTHO05D003332 4.2e-38 163.3 486 31.9
arahy.Tifrunner.gnm1.ann1.D6ZH50 Arachis hypogaea HOM05D003520 ORTHO05D003332 6.1e-37 159.5 437 30.7
CANSAT21G0383 Cannabis sativa HOM05D003520 ORTHO05D003332 7.0e-33 146.0 550 28.5
PGR142G4230 Punica granatum HOM05D003520 ORTHO05D003332 1.2e-32 145.2 211 40.3
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 4.5e-32 143.3 452 30.3
Lalb_Chr19g0130921 Lupinus albus HOM05D003520 ORTHO05D003332 1.5e-30 138.3 412 31.6
Lalb_Chr01g0009251 Lupinus albus HOM05D003520 ORTHO05D003332 3.0e-28 130.6 522 28.2
arahy.Tifrunner.gnm1.ann1.SM3UTK Arachis hypogaea HOM05D003520 ORTHO05D003332 2.6e-27 127.5 301 32.6
GSVIVG01010547001 Vitis vinifera HOM05D003520 ORTHO05D003332 5.7e-27 126.3 311 35.4
Manes.14G027150 Manihot esculenta HOM05D003520 ORTHO05D003332 1.7e-26 124.8 184 42.4
Lj8C25T11 Lonicera japonica HOM05D003520 ORTHO05D003332 2.4e-25 120.9 519 27.4
Cpa.g.sc107.38 Carica papaya HOM05D003520 ORTHO05D003332 5.3e-25 119.8 395 28.6
Peaxi162Scf00915g00037 Petunia axillaris HOM05D012625 ORTHO05D003332 1.1e-22 112.1 501 26.5
Aqoxy7G00385 Aquilegia oxysepala HOM05D003520 ORTHO05D003332 1.5e-22 111.7 422 26.5
MELO3C006898.2 Cucumis melo HOM05D003520 ORTHO05D003332 1.9e-22 111.3 181 38.7
Nitab4.5_0000716g0220 Nicotiana tabacum HOM05D012625 ORTHO05D003332 2.5e-22 110.9 452 27.0
PGSC0003DMG400014327 Solanum tuberosum HOM05D012625 ORTHO05D003332 3.2e-22 110.5 539 25.4
CAN.G1704.2 Capsicum annuum HOM05D012625 ORTHO05D003332 5.5e-22 109.8 513 25.7
Manes.14G027100 Manihot esculenta HOM05D003520 ORTHO05D003332 7.2e-22 109.4 290 34.5
Nn1g01417 Nelumbo nucifera HOM05D003520 ORTHO05D003332 1.2e-21 108.6 432 27.8
Actinidia34100 Actinidia chinensis HOM05D003520 ORTHO05D003332 3.0e-20 104.0 301 34.9
MELO3C005647.2 Cucumis melo HOM05D003520 ORTHO05D003332 4.0e-20 103.6 183 39.3
GSVIVG01019812001 Vitis vinifera HOM05D000016 ORTHO05D000109 1.5e-19 101.7 429 28.7
Sopen03g004790 Solanum pennellii HOM05D012625 ORTHO05D003332 3.4e-19 100.5 522 24.3
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 9.8e-19 99.0 420 29.5
Nitab4.5_0001508g0010 Nicotiana tabacum HOM05D012625 ORTHO05D003332 9.8e-19 99.0 436 26.1
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 3.7e-18 97.1 516 24.2
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 8.3e-18 95.9 383 23.5
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 1.1e-17 95.5 626 22.2
MSTRG.8747 Avicennia marina HOM05D003520 ORTHO05D003332 3.1e-17 94.0 355 28.7
Ca_25739_v3 Cicer arietinum L. HOM05D003520 ORTHO05D003332 4.1e-17 93.6 215 34.0
Actinidia05219 Actinidia chinensis HOM05D003520 ORTHO05D003332 5.4e-17 93.2 519 23.5
ClCG01G002970 Citrullus lanatus HOM05D003520 ORTHO05D003332 1.2e-16 92.0 620 23.2
Glyma.10G237300 Glycine max HOM05D003520 ORTHO05D003332 2.7e-16 90.9 270 32.2
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 1.0e-15 89.0 492 24.2
Actinidia32870 Actinidia chinensis HOM05D003520 ORTHO05D003332 1.3e-15 88.6 302 32.1
Cfa012135 Carpinus fangiana HOM05D003520 ORTHO05D003332 1.1e-14 85.5 413 26.2
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 1.1e-14 85.5 475 26.3
Dinv38981 Davidia involucrata HOM05D003520 ORTHO05D003332 4.2e-14 83.6 525 29.1
SalBow4G1422 Salvia bowleyana HOM05D006981 ORTHO05D008719 5.5e-14 83.2 344 28.5
SalBow4G2131 Salvia bowleyana HOM05D006981 ORTHO05D008719 5.5e-14 83.2 344 28.5
PSO478G3392 Papaver somniferum HOM05D003520 ORTHO05D003332 9.4e-14 82.4 174 33.3
GSVIVG01019811001 Vitis vinifera HOM05D000016 ORTHO05D000109 9.4e-14 82.4 462 26.0
Prupe.5G094800 Prunus persica HOM05D003520 ORTHO05D003332 2.1e-13 81.3 339 28.6
PSO782G5503 Papaver somniferum HOM05D003520 ORTHO05D003332 1.4e-12 78.6 175 32.6
Haze_08912 Corylus avellana HOM05D003520 ORTHO05D003332 1.8e-12 78.2 412 24.5
Haze_08915 Corylus avellana HOM05D003520 ORTHO05D003332 1.8e-12 78.2 412 24.5
CSS0014139 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 2.3e-12 77.8 321 27.7
QL12p017888 Quercus lobata HOM05D003520 ORTHO05D003332 6.8e-12 76.3 612 23.5
CiPaw.11G138700 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.2e-11 75.5 601 22.5
Oeu024236.1 Olea europaea HOM05D012625 ORTHO05D003332 4.4e-11 73.6 292 27.7
Ca_17554_v3 Cicer arietinum L. HOM05D003520 ORTHO05D003332 5.7e-11 73.2 276 27.5
vmacro06696 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 7.5e-11 72.8 296 28.0
Atru.chr9.1567 Acer truncatum HOM05D003520 ORTHO05D000037 1.7e-10 71.6 330 27.9
Actinidia14538 Actinidia chinensis HOM05D003520 ORTHO05D003332 4.9e-10 70.1 450 24.4
Hma1.2p1_2094F.1_g313935 Hydrangea macrophylla HOM05D012625 ORTHO05D003332 4.9e-10 70.1 133 38.3
MD06G1076800 Malus domestica HOM05D003520 ORTHO05D003332 1.1e-09 68.9 413 24.2
Ciclev10018609m.g Citrus clementina HOM05D003520 ORTHO05D003332 1.4e-09 68.6 311 29.9
TPR.G10738 Trifolium pratense HOM05D003520 ORTHO05D003332 1.8e-09 68.2 167 34.7
Cc08_g14270 Coffea canephora HOM05D003520 ORTHO05D003332 4.1e-09 67.0 363 24.0
Glyma.08G012000 Glycine max HOM05D003520 ORTHO05D003332 5.4e-09 66.6 364 23.4
THA.LOC104800257 Tarenaya hassleriana HOM05D012366 ORTHO05D003332 5.4e-09 66.6 371 23.2
MBI17_g21053_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 7.0e-09 66.2 49 63.3
Psat0s2241g0160 Pisum sativum HOM05D003520 ORTHO05D003332 2.0e-08 64.7 145 35.2
Hund11497 Selenicereus undatus HOM05D003520 ORTHO05D003332 2.7e-08 64.3 85 41.2
MD14G1098200 Malus domestica HOM05D003520 ORTHO05D003332 3.5e-08 63.9 215 30.7
DCAR_020242 Daucus carota HOM05D003520 ORTHO05D003332 4.5e-08 63.5 548 26.8
FAN18G3894 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.0e-07 62.4 158 34.2
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 1.7e-07 61.6 65 49.2
FvH4_5g01860 Fragaria vesca HOM05D003520 ORTHO05D003332 2.3e-07 61.2 158 33.5
Glyma.05G205100 Glycine max HOM05D003520 ORTHO05D003332 2.3e-07 61.2 366 23.5
Oeu056239.2 Olea europaea HOM05D003520 ORTHO05D003332 2.3e-07 61.2 336 23.5
RcHm_v2.0_Chr7g0198661 Rosa chinensis HOM05D003520 ORTHO05D003332 2.3e-07 61.2 275 25.5
Sc22g0000330 Simmondsia chinensis HOM05D003520 ORTHO05D003332 5.0e-07 60.1 66 50.0
FAN13G1265 Fragaria x ananassa HOM05D003520 ORTHO05D003332 6.6e-07 59.7 161 34.2
FAN04G1936 Fragaria x ananassa HOM05D003520 ORTHO05D003332 8.6e-07 59.3 160 34.4
Lalb_Chr09g0321101 Lupinus albus HOM05D003520 ORTHO05D003332 8.6e-07 59.3 147 32.7
Sp6g14480 Schrenkiella parvula HOM05D012366 ORTHO05D003332 8.6e-07 59.3 154 27.9
TPR.G12816 Trifolium pratense HOM05D003520 ORTHO05D003332 1.1e-06 58.9 383 23.0
AUR62010600 Chenopodium quinoa HOM05D003520 ORTHO05D003332 1.5e-06 58.5 59 47.5
Aa31LG3G8610 Aethionema arabicum HOM05D012366 ORTHO05D003332 2.5e-06 57.8 626 23.8
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 2.5e-06 57.8 50 54.0
Rhsim07G0092500 Rhododendron simsii HOM05D003520 ORTHO05D003332 4.3e-06 57.0 366 24.9
SEGI_27755 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 4.3e-06 57.0 66 42.4
AT5G52230 Arabidopsis thaliana HOM05D012366 ORTHO05D003332 5.6e-06 56.6 268 27.6
SalBow1G4878 Salvia bowleyana HOM05D003520 ORTHO05D003332 5.6e-06 56.6 333 26.7
Carub.0008s1232 Capsella rubella HOM05D012366 ORTHO05D003332 7.3e-06 56.2 123 31.7
Phvul.002G287000 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 7.3e-06 56.2 148 31.1
EL10Ac5g12763 Beta vulgaris HOM05D003520 ORTHO05D003332 9.5e-06 55.8 50 48.0
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 9.5e-06 55.8 369 26.6


User provided reference genes

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