Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 4.2e-127 458.4 295 100.0
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 1.7e-104 383.3 283 86.9
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 5.0e-104 381.7 281 88.6
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 9.5e-95 350.9 300 73.3
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 3.1e-93 345.9 300 75.0
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.2e-93 345.1 300 74.3
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 6.4e-91 338.2 293 74.4
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 1.1e-90 337.4 297 62.3
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 3.2e-90 335.9 297 62.3
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 3.2e-90 335.9 300 73.0
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.7e-89 332.8 285 75.4
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 2.7e-89 332.8 306 72.5
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.5e-89 332.4 285 75.1
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.5e-89 332.4 285 75.1
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 4.6e-89 332.0 285 75.1
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 5.1e-88 328.6 300 68.0
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 7.3e-87 324.7 300 69.3
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 1.6e-86 323.6 294 73.8
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 2.8e-86 322.8 301 60.5
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 1.4e-85 320.5 282 68.8
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 8.9e-85 317.8 286 73.8
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 4.4e-84 315.5 294 62.6
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 4.4e-84 315.5 284 69.4
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 5.8e-84 315.1 302 66.6
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 5.8e-84 315.1 303 65.3
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 9.9e-84 314.3 285 74.0
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 1.3e-83 313.9 301 61.8
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 2.9e-83 312.8 257 67.7
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 2.9e-83 312.8 286 77.6
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 3.8e-83 312.4 259 63.3
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 3.8e-83 312.4 285 74.7
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 4.9e-83 312.0 284 72.2
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 8.4e-83 311.2 311 69.5
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 1.1e-82 310.8 297 59.3
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 3.2e-82 309.3 264 62.5
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 7.1e-82 308.1 299 57.9
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 2.7e-81 306.2 305 63.6
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 3.5e-81 305.8 301 62.5
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 4.6e-81 305.4 290 59.0
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 7.8e-81 304.7 283 68.9
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 1.0e-80 304.3 263 70.7
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 2.3e-80 303.1 296 59.8
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 3.0e-80 302.8 311 62.7
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 5.1e-80 302.0 296 59.5
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 6.6e-80 301.6 284 61.3
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 1.1e-79 300.8 295 64.7
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 1.5e-79 300.4 293 59.0
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 1.9e-79 300.1 261 62.8
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 9.6e-79 297.7 302 57.0
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.2e-78 297.4 297 55.9
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 2.8e-78 296.2 296 61.8
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 3.6e-78 295.8 302 62.6
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 2.0e-76 290.0 283 69.3
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.3e-75 287.3 285 57.5
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 1.3e-75 287.3 259 62.2
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 1.3e-75 287.3 282 59.6
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 1.3e-75 287.3 302 54.6
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 2.9e-75 286.2 298 56.7
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 3.2e-74 282.7 259 60.6
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 5.4e-74 282.0 257 66.1
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 7.1e-74 281.6 259 61.0
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 7.1e-74 281.6 311 57.2
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.2e-73 280.8 272 61.0
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 3.5e-73 279.3 259 58.7
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 1.7e-72 276.9 261 64.8
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 1.7e-72 276.9 260 66.9
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 3.9e-72 275.8 301 57.8
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 1.5e-71 273.9 259 72.2
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 1.9e-71 273.5 266 58.3
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 5.6e-71 271.9 259 61.8
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 5.6e-71 271.9 262 66.0
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 1.6e-70 270.4 259 61.4
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 1.6e-70 270.4 294 61.6
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 2.1e-70 270.0 259 72.2
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 2.1e-70 270.0 259 62.5
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 2.1e-70 270.0 259 62.5
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 4.8e-70 268.9 260 61.9
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 8.1e-70 268.1 259 71.8
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 8.1e-70 268.1 284 67.3
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 2.4e-69 266.5 263 62.4
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 2.4e-69 266.5 266 60.5
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 3.1e-69 266.2 259 62.9
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 3.1e-69 266.2 259 62.9
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 3.1e-69 266.2 259 62.9
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 5.3e-69 265.4 262 62.2
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 5.3e-69 265.4 298 54.7
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 6.9e-69 265.0 259 60.6
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 9.0e-69 264.6 267 64.4
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 1.2e-68 264.2 266 58.6
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.5e-68 263.8 285 55.1
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 2.0e-68 263.5 296 56.1
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.6e-68 263.1 263 64.3
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 2.6e-68 263.1 264 61.0
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 3.4e-68 262.7 258 57.4
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 1.3e-67 260.8 264 62.1
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 1.7e-67 260.4 264 60.6
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 2.2e-67 260.0 263 57.4
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 2.2e-67 260.0 258 61.2
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 1.1e-66 257.7 262 54.6
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.1e-66 257.7 266 59.4
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 1.4e-66 257.3 297 50.8
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 1.9e-66 256.9 259 69.9
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 1.9e-66 256.9 257 57.2
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 2.4e-66 256.5 265 54.0
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 3.2e-66 256.1 283 66.1
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 7.1e-66 255.0 257 55.6
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 9.3e-66 254.6 262 53.8
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 9.3e-66 254.6 265 53.6
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 1.2e-65 254.2 218 62.4
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.6e-65 253.8 234 73.1
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.6e-65 253.8 266 57.9
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 1.6e-65 253.8 265 53.6
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 2.1e-65 253.4 264 56.4
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 3.5e-65 252.7 299 51.8
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 7.9e-65 251.5 291 50.9
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 1.0e-64 251.1 258 54.3
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 2.3e-64 250.0 294 51.4
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 3.3e-63 246.1 300 57.3
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 4.3e-63 245.7 256 55.5
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 5.6e-63 245.4 263 54.0
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 9.0e-61 238.0 270 52.2
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 2.0e-60 236.9 267 52.8
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 7.6e-60 235.0 253 61.3
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 8.4e-59 231.5 251 60.6
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 1.1e-58 231.1 264 58.7
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 2.5e-58 229.9 292 55.8
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 2.1e-57 226.9 261 52.1
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 3.5e-57 226.1 239 57.3
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 1.8e-56 223.8 265 57.7
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 2.3e-56 223.4 247 61.5
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 9.0e-53 211.5 252 57.9
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 1.1e-50 204.5 258 51.6
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 3.2e-50 203.0 289 47.4
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 3.0e-48 196.4 285 54.4
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.4e-45 187.6 208 57.7
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.4e-42 177.6 183 77.6
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 3.2e-42 176.4 126 69.8
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 3.2e-42 176.4 210 51.4
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 7.2e-42 175.3 235 44.3
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.2e-41 174.5 283 42.0
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 7.9e-41 171.8 148 74.3
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 6.7e-40 168.7 265 41.1
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 6.7e-40 168.7 217 50.2
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 9.7e-39 164.9 296 45.9
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 1.7e-38 164.1 251 38.6
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.8e-38 163.3 159 66.7
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 1.1e-37 161.4 152 76.3
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 2.4e-37 160.2 260 40.4
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 1.3e-35 154.5 143 55.2
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 1.7e-35 154.1 122 56.6
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 2.2e-35 153.7 264 40.2
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.1e-34 151.4 101 68.3
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 1.9e-34 150.6 235 40.4
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 1.0e-32 144.8 187 62.6
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 1.8e-32 144.1 100 67.0
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 3.1e-29 133.3 117 65.0
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 6.5e-27 125.6 284 32.7
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 1.9e-26 124.0 256 35.2
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 1.9e-26 124.0 116 62.9
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 1.9e-26 124.0 116 62.9
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 1.2e-25 121.3 251 31.9
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.4e-24 117.9 124 53.2
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 3.7e-22 109.8 196 39.3
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.4e-21 107.8 108 61.1
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 9.1e-21 105.1 206 35.0
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 1.3e-19 101.3 256 34.4
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 6.5e-19 99.0 74 74.3
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.9e-18 97.4 85 57.6
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 4.2e-18 96.3 92 60.9
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.2e-17 94.7 117 53.8
Prupe.2G115400 Prunus persica HOM05D003921 ORTHO05D004394 1.6e-17 94.4 60 86.7
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.0e-16 91.7 83 66.3
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.8e-16 90.9 68 63.2
Oeu039213.1 Olea europaea HOM05D003921 ORTHO05D004394 6.8e-16 89.0 73 67.1
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 1.7e-14 84.3 243 30.5
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 6.3e-14 82.4 258 30.6
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.8e-13 80.9 58 65.5
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 1.6e-09 67.8 53 66.0
DCAR_013591 Daucus carota HOM05D003921 ORTHO05D004394 3.4e-07 60.1 112 40.2
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 1.3e-06 58.2 36 75.0
DCAR_018080 Daucus carota HOM05D002169 ORTHO05D018172 2.2e-06 57.4 109 38.5


User provided reference genes

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