Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G221200 Prunus persica HOM05D005673 ORTHO05D007081 8.9e-119 430.3 213 100.0
FvH4_7g20560 Fragaria vesca HOM05D005673 ORTHO05D007081 6.6e-98 360.9 213 83.1
FAN06G0951 Fragaria x ananassa HOM05D005673 ORTHO05D007081 6.6e-98 360.9 213 83.1
FAN10G0505 Fragaria x ananassa HOM05D005673 ORTHO05D007081 6.6e-98 360.9 213 83.1
RcHm_v2.0_Chr1g0364441 Rosa chinensis HOM05D005673 ORTHO05D007081 8.7e-98 360.5 213 82.2
FAN03G2886 Fragaria x ananassa HOM05D005673 ORTHO05D007081 1.1e-97 360.1 213 83.1
FAN06G2416 Fragaria x ananassa HOM05D005673 ORTHO05D007081 4.3e-97 358.2 213 82.6
MD01G1114500 Malus domestica HOM05D005673 ORTHO05D007081 9.6e-97 357.1 214 86.0
FAN01G1496 Fragaria x ananassa HOM05D005673 ORTHO05D007081 5.3e-95 351.3 213 81.7
FAN01G2008 Fragaria x ananassa HOM05D005673 ORTHO05D007081 5.3e-95 351.3 213 81.7
MD07G1182600 Malus domestica HOM05D005673 ORTHO05D007081 1.7e-93 346.3 214 84.1
TAR623G0755 Trochodendron aralioides HOM05D005673 ORTHO05D007081 9.6e-81 303.9 216 71.3
CANSAT11G2273 Cannabis sativa HOM05D005673 ORTHO05D007081 6.2e-80 301.2 216 69.9
Ciclev10032487m.g Citrus clementina HOM05D005673 ORTHO05D007081 1.3e-77 293.5 214 68.2
Gorai.010G203600 Gossypium raimondii HOM05D005673 ORTHO05D007081 1.1e-76 290.4 214 67.8
Manes.07G105200 Manihot esculenta HOM05D005673 ORTHO05D007081 1.1e-76 290.4 213 63.8
QL08p057314 Quercus lobata HOM05D005673 ORTHO05D007081 1.4e-76 290.0 217 70.5
Gohir.D06G174000 Gossypium hirsutum HOM05D005673 ORTHO05D007081 3.2e-76 288.9 214 67.3
GSVIVG01032643001 Vitis vinifera HOM05D005673 ORTHO05D007081 3.2e-76 288.9 209 68.4
Cfa001572 Carpinus fangiana HOM05D005673 ORTHO05D007081 5.5e-76 288.1 215 67.9
Haze_16957 Corylus avellana HOM05D005673 ORTHO05D007081 5.5e-76 288.1 215 67.9
Duzib114G0197 Durio zibethinus HOM05D005673 ORTHO05D007081 5.5e-76 288.1 214 66.8
Gohir.A06G179004 Gossypium hirsutum HOM05D005673 ORTHO05D007081 1.6e-75 286.6 214 66.8
Thecc.10G064600 Theobroma cacao HOM05D005673 ORTHO05D007081 2.7e-75 285.8 214 66.4
TWI38G1168 Tripterygium wilfordii HOM05D005673 ORTHO05D007081 1.0e-74 283.9 213 63.4
Actinidia38234 Actinidia chinensis HOM05D005673 ORTHO05D007081 3.9e-74 282.0 215 67.9
Sabra08G0032600 Salix brachista HOM05D005673 ORTHO05D007081 3.3e-73 278.9 215 64.2
Potri.008G046400 Populus trichocarpa HOM05D005673 ORTHO05D007081 5.7e-73 278.1 215 64.7
Cfa005598 Carpinus fangiana HOM05D005673 ORTHO05D007081 9.7e-73 277.3 215 65.1
COL.COLO4_08204 Corchorus olitorius HOM05D005673 ORTHO05D007081 1.6e-72 276.6 221 62.9
CiPaw.02G177700 Carya illinoinensis HOM05D005673 ORTHO05D007081 1.8e-71 273.1 215 65.1
vmacro07099 Vaccinium macrocarpon HOM05D005673 ORTHO05D007081 2.4e-71 272.7 230 62.2
Lalb_Chr19g0126251 Lupinus albus HOM05D005673 ORTHO05D007081 4.1e-71 271.9 215 62.8
Actinidia03012 Actinidia chinensis HOM05D005673 ORTHO05D007081 6.9e-71 271.2 215 65.6
Lj1g0007847 Lotus japonicus HOM05D005673 ORTHO05D007081 6.9e-71 271.2 221 62.9
PSO384G5123 Papaver somniferum HOM05D005673 ORTHO05D007081 2.0e-70 269.6 213 64.8
PSO339G1442 Papaver somniferum HOM05D005673 ORTHO05D007081 7.7e-70 267.7 213 63.4
MBI14_g17793_MAGBIO Magnolia biondii HOM05D005673 ORTHO05D007081 3.8e-69 265.4 210 64.8
Nitab4.5_0000575g0020 Nicotiana tabacum HOM05D005673 ORTHO05D007081 3.8e-69 265.4 211 62.1
Sc20g0002250 Simmondsia chinensis HOM05D005673 ORTHO05D007081 3.8e-69 265.4 222 62.2
Nitab4.5_0002078g0030 Nicotiana tabacum HOM05D005673 ORTHO05D007081 6.5e-69 264.6 211 62.6
Aqoxy4G03141 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 1.1e-68 263.8 217 62.7
CSS0045417 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 1.9e-68 263.1 214 65.9
SalBow4G0159 Salvia bowleyana HOM05D005673 ORTHO05D007081 3.2e-68 262.3 209 60.3
CsaV3_5G006400 Cucumis sativus L. HOM05D005673 ORTHO05D007081 5.5e-68 261.5 211 62.1
CSS0019421 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 1.6e-67 260.0 214 65.0
MELO3C011718.2 Cucumis melo HOM05D005673 ORTHO05D007081 6.1e-67 258.1 214 60.7
Ca_07421_v3 Cicer arietinum L. HOM05D005673 ORTHO05D007081 1.0e-66 257.3 209 62.2
ClCG02G013770 Citrullus lanatus HOM05D005673 ORTHO05D007081 1.8e-66 256.5 214 60.3
PGSC0003DMG400002916 Solanum tuberosum HOM05D005673 ORTHO05D007081 1.8e-66 256.5 212 60.8
Lj1A928T62 Lonicera japonica HOM05D005673 ORTHO05D007081 2.3e-66 256.1 210 62.4
Sed0006326 Sechium edule HOM05D005673 ORTHO05D007081 3.0e-66 255.8 215 59.5
Lj1A926T37 Lonicera japonica HOM05D005673 ORTHO05D007081 6.7e-66 254.6 210 61.9
CAN.G551.89 Capsicum annuum HOM05D005673 ORTHO05D007081 8.8e-66 254.2 213 59.6
TPR.G10191 Trifolium pratense HOM05D005673 ORTHO05D007081 1.1e-65 253.8 211 60.7
Solyc12g009500.2 Solanum lycopersicum HOM05D005673 ORTHO05D007081 2.0e-65 253.1 212 59.4
PGR142G2170 Punica granatum HOM05D005673 ORTHO05D007081 3.3e-65 252.3 214 57.5
arahy.Tifrunner.gnm1.ann1.YNZN7C Arachis hypogaea HOM05D005673 ORTHO05D007081 4.3e-65 251.9 216 60.2
Sopen12g004500 Solanum pennellii HOM05D005673 ORTHO05D007081 4.3e-65 251.9 212 59.4
arahy.Tifrunner.gnm1.ann1.R12QR1 Arachis hypogaea HOM05D005673 ORTHO05D007081 5.7e-65 251.5 216 59.7
Hund22450 Selenicereus undatus HOM05D005673 ORTHO05D007081 5.7e-65 251.5 220 60.5
Oeu008278.1 Olea europaea HOM05D005673 ORTHO05D007081 2.2e-64 249.6 208 60.1
ECA233G0150 Erigeron canadensis HOM05D005673 ORTHO05D007081 2.8e-64 249.2 209 60.3
MSTRG.9191 Avicennia marina HOM05D005673 ORTHO05D007081 6.3e-64 248.1 218 58.7
AUR62036006 Chenopodium quinoa HOM05D005673 ORTHO05D007081 8.2e-64 247.7 220 60.0
Rhsim03G0121300 Rhododendron simsii HOM05D005673 ORTHO05D007081 2.4e-63 246.1 187 63.1
THA.LOC104825722 Tarenaya hassleriana HOM05D005673 ORTHO05D007081 2.4e-63 246.1 217 58.5
Ah.16g108000 Amaranthus hybridus HOM05D005673 ORTHO05D007081 3.1e-63 245.7 229 56.8
Glyma.08G340700 Glycine max HOM05D005673 ORTHO05D007081 2.0e-62 243.0 217 58.5
Eucgr.G02786 Eucalyptus grandis HOM05D005673 ORTHO05D007081 2.6e-62 242.7 216 58.3
Lsat_1_v5_gn_8_21281 Lactuca sativa HOM05D005673 ORTHO05D007081 2.6e-62 242.7 219 58.4
Phvul.008G138600 Phaseolus vulgaris HOM05D005673 ORTHO05D007081 1.7e-61 240.0 220 57.7
Cc09_g02320 Coffea canephora HOM05D005673 ORTHO05D007081 2.9e-61 239.2 214 56.5
SGA_v2.0_scaffold62G21443 Striga asiatica HOM05D005673 ORTHO05D007081 5.0e-61 238.4 209 56.0
CARHR261110 Cardamine hirsuta HOM05D005673 ORTHO05D007081 6.5e-61 238.0 216 56.9
EL10Ac2g03532 Beta vulgaris HOM05D005673 ORTHO05D007081 8.5e-61 237.7 218 57.8
BcaB01g01447 Brassica carinata HOM05D005673 ORTHO05D007081 1.9e-60 236.5 217 56.7
Thhalv10028887m.g Eutrema salsugineum HOM05D005673 ORTHO05D007081 4.2e-60 235.3 216 56.5
AL6G43874 Arabidopsis lyrata HOM05D005673 ORTHO05D007081 5.5e-60 235.0 216 55.6
Sp6g07430 Schrenkiella parvula HOM05D005673 ORTHO05D007081 9.4e-60 234.2 216 56.5
AT4G10090 Arabidopsis thaliana HOM05D005673 ORTHO05D007081 1.6e-59 233.4 216 55.1
HanXRQChr08g0219361 Helianthus annuus HOM05D005673 ORTHO05D007081 4.7e-59 231.9 211 57.3
DCAR_015256 Daucus carota HOM05D005673 ORTHO05D007081 6.1e-59 231.5 269 48.3
BcaC04g21010 Brassica carinata HOM05D005673 ORTHO05D007081 1.4e-58 230.3 212 57.5
C09p36690 Brassica napus HOM05D005673 ORTHO05D007081 1.4e-58 230.3 212 57.5
BolC9t56500H Brassica oleracea HOM05D005673 ORTHO05D007081 1.4e-58 230.3 212 57.5
A09p28870 Brassica napus HOM05D005673 ORTHO05D007081 2.3e-58 229.6 212 58.0
Carub.0006s2866 Capsella rubella HOM05D005673 ORTHO05D007081 2.3e-58 229.6 217 54.4
Atru.BG.271.p Acer truncatum HOM05D005673 ORTHO05D007081 5.7e-57 224.9 196 60.2
Aa31LG9G11910 Aethionema arabicum HOM05D005673 ORTHO05D007081 6.3e-56 221.5 199 55.3
Migut.F02013 Erythranthe guttata HOM05D005673 ORTHO05D007081 4.5e-54 215.3 222 52.7
MD00G1166800 Malus domestica HOM05D005673 ORTHO05D007081 2.2e-53 213.0 123 86.2
HPP92_012063 Vanilla planifolia HOM05D005673 ORTHO05D007081 5.0e-53 211.8 226 50.9
Dinv25934 Davidia involucrata HOM05D005673 ORTHO05D007081 6.5e-53 211.5 144 69.4
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 1.6e-51 206.8 209 49.8
Nn2g10602 Nelumbo nucifera HOM05D005673 ORTHO05D007081 8.0e-51 204.5 187 58.8
Hma1.2p1_0348F.1_g131860 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 3.3e-49 199.1 151 64.2
Os03g0284000 Oryza sativa ssp. japonica HOM05D005673 ORTHO05D007081 8.2e-48 194.5 210 50.5
Zm00001eb378810 Zea mays HOM05D005673 ORTHO05D007081 1.2e-46 190.7 208 48.6
Atru.chr12.608 Acer truncatum HOM05D005673 ORTHO05D007081 1.2e-43 180.6 123 71.5
AUR62041616 Chenopodium quinoa HOM05D005673 ORTHO05D007081 1.6e-43 180.3 220 47.3
Peaxi162Scf00170g00413 Petunia axillaris HOM05D005673 ORTHO05D007081 1.4e-39 167.2 210 46.7
Psat3g152960 Pisum sativum HOM05D005673 ORTHO05D007081 1.9e-36 156.8 115 61.7
Medtr7g047440 Medicago truncatula HOM05D005673 ORTHO05D007081 1.2e-35 154.1 118 59.3
Medtr7g451610 Medicago truncatula HOM05D005673 ORTHO05D007081 1.2e-35 154.1 118 59.3
Medtr7g451710 Medicago truncatula HOM05D005673 ORTHO05D007081 1.2e-35 154.1 118 59.3
Mapoly0003s0199 Marchantia polymorpha HOM05D005673 ORTHO05D007081 3.0e-34 149.4 210 41.0
SMO347G0616 Selaginella moellendorffii HOM05D005673 ORTHO05D007081 2.6e-33 146.4 203 39.4
AagrBONN_evm.TU.Sc2ySwM_362.1467 Anthoceros agrestis HOM05D005673 ORTHO05D007081 9.2e-31 137.9 219 37.0
VMungo1383G1385 Vigna mungo HOM05D005673 ORTHO05D007081 5.9e-30 135.2 114 56.1
SGA_v2.0_scaffold17G08196 Striga asiatica HOM05D005673 ORTHO05D007081 7.7e-30 134.8 118 54.2
PSO713G0026 Papaver somniferum HOM05D005673 ORTHO05D007081 1.3e-29 134.0 159 49.7
Psat0s9937g0040 Pisum sativum HOM05D005673 ORTHO05D007081 1.6e-27 127.1 84 69.0
HPP92_012075 Vanilla planifolia HOM05D005673 ORTHO05D007081 1.4e-26 124.0 109 55.0
Pp3c2_31740 Physcomitrium patens HOM05D005673 ORTHO05D007081 2.3e-26 123.2 238 34.5
Aqoxy4G03136 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 4.9e-24 115.5 158 46.2
Psat3g152920 Pisum sativum HOM05D005673 ORTHO05D007081 1.2e-22 110.9 90 62.2
unitig_37.g12298 Utricularia gibba HOM05D005673 ORTHO05D007081 1.2e-22 110.9 82 62.2
Psat3g153040 Pisum sativum HOM05D005673 ORTHO05D007081 3.3e-20 102.8 90 58.9
unitig_37.g12299 Utricularia gibba HOM05D005673 ORTHO05D007081 3.3e-20 102.8 87 54.0
HanXRQChr02g0043631 Helianthus annuus HOM05D005673 ORTHO05D007081 4.7e-19 99.0 94 53.2
Hma1.2p1_0348F.1_g131840 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 3.4e-17 92.8 77 64.9
VMungo1383G3547 Vigna mungo HOM05D005673 ORTHO05D007081 2.2e-16 90.1 76 64.5
MD01G1114600 Malus domestica HOM05D005673 ORTHO05D007081 3.2e-15 86.3 61 83.6
Medtr7g050450 Medicago truncatula HOM05D005673 ORTHO05D007081 1.6e-14 84.0 163 35.0
Cpa.g.sc5360.1 Carica papaya HOM05D005673 ORTHO05D007081 1.7e-13 80.5 47 80.9
Cpa.g.c44350 Carica papaya HOM05D005673 ORTHO05D007081 2.3e-13 80.1 73 56.2
CBR_g23354 Chara braunii HOM05D005673 ORTHO05D007081 4.3e-12 75.9 123 39.8
HanXRQChr13g0394111 Helianthus annuus HOM05D005673 ORTHO05D007081 9.5e-12 74.7 67 55.2
BcaB04g18418 Brassica carinata HOM05D005673 ORTHO05D007081 2.3e-10 70.1 97 43.3


User provided reference genes

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