Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G214100 Prunus persica HOM05D004188 ORTHO05D004445 1.9e-50 202.6 136 100.0
Dinv31327 Davidia involucrata HOM05D001979 ORTHO05D001961 6.1e-12 74.7 49 73.5
MBI07_g19312_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 1.4e-11 73.6 54 64.8
Gohir.D03G134100 Gossypium hirsutum HOM05D004188 ORTHO05D004445 1.8e-11 73.2 54 64.8
Gorai.003G141200 Gossypium raimondii HOM05D004188 ORTHO05D004445 3.9e-11 72.0 54 63.0
arahy.Tifrunner.gnm1.ann1.H0Z3H2 Arachis hypogaea HOM05D004188 ORTHO05D004445 1.1e-10 70.5 49 71.4
Prupe.6G101100 Prunus persica HOM05D004188 ORTHO05D004445 2.0e-10 69.7 53 60.4
Gohir.A03G034200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 2.6e-10 69.3 51 64.7
Rhsim01G0217100 Rhododendron simsii HOM05D004188 ORTHO05D004445 3.3e-10 68.9 52 63.5
Actinidia03061 Actinidia chinensis HOM05D004188 ORTHO05D004445 5.7e-10 68.2 51 64.7
ClCG02G021140 Citrullus lanatus HOM05D004188 ORTHO05D004445 5.7e-10 68.2 53 58.5
MELO3C025771.2 Cucumis melo HOM05D004188 ORTHO05D004445 7.4e-10 67.8 53 58.5
FAN11G3469 Fragaria x ananassa HOM05D004188 ORTHO05D004445 7.4e-10 67.8 53 60.4
Potri.009G013500 Populus trichocarpa HOM05D004188 ORTHO05D004445 9.7e-10 67.4 54 61.1
Rhsim01G0217000 Rhododendron simsii HOM05D004188 ORTHO05D004445 1.3e-09 67.0 51 62.7
CsaV3_6G013900 Cucumis sativus L. HOM05D004188 ORTHO05D004445 1.7e-09 66.6 53 58.5
Lsat_1_v5_gn_6_46020 Lactuca sativa HOM05D004188 ORTHO05D004445 1.7e-09 66.6 53 60.4
TWI75G1406 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 2.2e-09 66.2 54 61.1
CANSAT56G2191 Cannabis sativa HOM05D004188 ORTHO05D004445 2.8e-09 65.9 52 67.3
FvH4_3g32420 Fragaria vesca HOM05D004188 ORTHO05D004445 2.8e-09 65.9 51 60.8
EL10Ac9g22513 Beta vulgaris HOM05D004188 ORTHO05D004445 3.7e-09 65.5 53 56.6
Duzib170G0015 Durio zibethinus HOM05D004188 ORTHO05D004445 3.7e-09 65.5 51 60.8
Sed0015663 Sechium edule HOM05D004188 ORTHO05D004445 3.7e-09 65.5 53 56.6
Gorai.009G106500 Gossypium raimondii HOM05D004188 ORTHO05D004445 4.8e-09 65.1 54 61.1
Lj2g0024305 Lotus japonicus HOM05D004188 ORTHO05D004445 4.8e-09 65.1 49 63.3
MELO3C012432.2 Cucumis melo HOM05D004188 ORTHO05D004445 8.2e-09 64.3 54 61.1
PGR102G1665 Punica granatum HOM05D004188 ORTHO05D004445 8.2e-09 64.3 53 60.4
Duzib150G1311 Durio zibethinus HOM05D004188 ORTHO05D004445 1.1e-08 63.9 54 59.3
RcHm_v2.0_Chr5g0059401 Rosa chinensis HOM05D004188 ORTHO05D004445 1.1e-08 63.9 53 56.6
CARHR150740 Cardamine hirsuta HOM05D004188 ORTHO05D004445 1.4e-08 63.5 47 61.7
CiPaw.14G080400 Carya illinoinensis HOM05D004188 ORTHO05D004445 1.4e-08 63.5 53 58.5
Sabra04G0141900 Salix brachista HOM05D004188 ORTHO05D004445 1.4e-08 63.5 52 61.5
MBI10_g41700_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 1.8e-08 63.2 46 60.9
Phvul.011G078900 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 1.8e-08 63.2 53 56.6
CANSAT54G2412 Cannabis sativa HOM05D004188 ORTHO05D004445 2.4e-08 62.8 53 54.7
Duzib168G0960 Durio zibethinus HOM05D004188 ORTHO05D004445 2.4e-08 62.8 51 60.8
Gohir.D05G102200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 2.4e-08 62.8 49 63.3
Cfa011320 Carpinus fangiana HOM05D004188 ORTHO05D004445 3.1e-08 62.4 54 57.4
ECA233G4889 Erigeron canadensis HOM05D004188 ORTHO05D004445 3.1e-08 62.4 52 59.6
FAN21G0748 Fragaria x ananassa HOM05D004188 ORTHO05D004445 3.1e-08 62.4 51 58.8
Lsat_1_v5_gn_1_65340 Lactuca sativa HOM05D004188 ORTHO05D004445 3.1e-08 62.4 53 54.7
Sabra09G0008000 Salix brachista HOM05D004188 ORTHO05D004445 3.1e-08 62.4 54 55.6
ECA238G3112 Erigeron canadensis HOM05D004188 ORTHO05D004445 5.3e-08 61.6 49 67.3
AT3G45230 Arabidopsis thaliana HOM05D004188 ORTHO05D004445 7.0e-08 61.2 49 55.1
BcaB01g01101 Brassica carinata HOM05D004188 ORTHO05D004445 7.0e-08 61.2 46 58.7
DCAR_006061 Daucus carota HOM05D004188 ORTHO05D004445 7.0e-08 61.2 53 54.7
FAN16G2082 Fragaria x ananassa HOM05D004188 ORTHO05D004445 7.0e-08 61.2 53 56.6
FAN25G0660 Fragaria x ananassa HOM05D004188 ORTHO05D004445 7.0e-08 61.2 53 56.6
Manes.04G021600 Manihot esculenta HOM05D004188 ORTHO05D004445 7.0e-08 61.2 52 55.8
arahy.Tifrunner.gnm1.ann1.70MDEI Arachis hypogaea HOM05D004188 ORTHO05D004445 9.1e-08 60.8 51 54.9
arahy.Tifrunner.gnm1.ann1.P4NYDW Arachis hypogaea HOM05D004188 ORTHO05D004445 9.1e-08 60.8 51 54.9
Glyma.11G146900 Glycine max HOM05D004188 ORTHO05D004445 9.1e-08 60.8 53 54.7
Glyma.12G067800 Glycine max HOM05D004188 ORTHO05D004445 9.1e-08 60.8 53 54.7
BcaC01g01980 Brassica carinata HOM05D004188 ORTHO05D004445 1.2e-07 60.5 46 58.7
A06p21540 Brassica napus HOM05D004188 ORTHO05D004445 1.2e-07 60.5 46 58.7
C03p69850 Brassica napus HOM05D004188 ORTHO05D004445 1.2e-07 60.5 46 58.7
BolC3t19246H Brassica oleracea HOM05D004188 ORTHO05D004445 1.2e-07 60.5 46 58.7
BraA06t25239Z Brassica rapa HOM05D004188 ORTHO05D004445 1.2e-07 60.5 46 58.7
Manes.07G101000 Manihot esculenta HOM05D004188 ORTHO05D004445 1.2e-07 60.5 54 55.6
PSO384G1281 Papaver somniferum HOM05D004188 ORTHO05D004445 1.2e-07 60.5 41 68.3
CAN.G631.25 Capsicum annuum HOM05D004188 ORTHO05D004445 1.5e-07 60.1 51 54.9
DCAR_006440 Daucus carota HOM05D004188 ORTHO05D004445 1.5e-07 60.1 44 61.4
DCAR_006441 Daucus carota HOM05D004188 ORTHO05D004445 2.0e-07 59.7 43 62.8
Potri.004G210300 Populus trichocarpa HOM05D004188 ORTHO05D004445 2.0e-07 59.7 52 59.6
VMungo1127G1131 Vigna mungo HOM05D000847 ORTHO05D003278 2.0e-07 59.7 53 54.7
PGSC0003DMG400008124 Solanum tuberosum HOM05D004188 ORTHO05D004445 2.6e-07 59.3 53 50.9
Medtr3g049390 Medicago truncatula HOM05D004188 ORTHO05D004445 3.4e-07 58.9 54 59.3
PSO339G1636 Papaver somniferum HOM05D004188 ORTHO05D004445 3.4e-07 58.9 41 65.9
Psat5g183560 Pisum sativum HOM05D004188 ORTHO05D004445 3.4e-07 58.9 54 59.3
MELO3C026856.2 Cucumis melo HOM05D004188 ORTHO05D004445 4.5e-07 58.5 53 54.7
ECA248G2476 Erigeron canadensis HOM05D004188 ORTHO05D004445 4.5e-07 58.5 50 50.0
Lalb_Chr14g0374691 Lupinus albus HOM05D004188 ORTHO05D004445 4.5e-07 58.5 53 56.6
Ah.01g014350 Amaranthus hybridus HOM05D004188 ORTHO05D004445 5.9e-07 58.2 53 52.8
Migut.D02222 Erythranthe guttata HOM05D004188 ORTHO05D004445 5.9e-07 58.2 51 60.8
Migut.D02278 Erythranthe guttata HOM05D004188 ORTHO05D004445 5.9e-07 58.2 51 60.8
Oeu002868.1 Olea europaea HOM05D004188 ORTHO05D004445 5.9e-07 58.2 53 52.8
Sed0026517 Sechium edule HOM05D004188 ORTHO05D004445 5.9e-07 58.2 53 54.7
ClCG03G002160 Citrullus lanatus HOM05D004188 ORTHO05D004445 7.7e-07 57.8 53 52.8
CsaV3_1G012810 Cucumis sativus L. HOM05D004188 ORTHO05D004445 7.7e-07 57.8 53 54.7
QL08p056015 Quercus lobata HOM05D007562 ORTHO05D009721 7.7e-07 57.8 47 59.6
THA.LOC104799503 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 7.7e-07 57.8 44 63.6
HPP92_005145 Vanilla planifolia HOM05D053319 ORTHO05D004445 7.7e-07 57.8 46 58.7
CiPaw.13G112700 Carya illinoinensis HOM05D004188 ORTHO05D004445 1.0e-06 57.4 53 54.7
Oeu001268.1 Olea europaea HOM05D004188 ORTHO05D004445 1.0e-06 57.4 53 54.7
Sc06g0010170 Simmondsia chinensis HOM05D004188 ORTHO05D004445 1.3e-06 57.0 48 58.3
AL5G23790 Arabidopsis lyrata HOM05D004188 ORTHO05D004445 1.7e-06 56.6 49 51.0
arahy.Tifrunner.gnm1.ann1.86U5T6 Arachis hypogaea HOM05D004188 ORTHO05D004445 1.7e-06 56.6 53 54.7
arahy.Tifrunner.gnm1.ann1.D47N05 Arachis hypogaea HOM05D004188 ORTHO05D004445 1.7e-06 56.6 53 54.7
Glyma.12G172900 Glycine max HOM05D004188 ORTHO05D004445 1.7e-06 56.6 53 52.8
Lsat_1_v5_gn_2_98481 Lactuca sativa HOM05D004188 ORTHO05D004445 1.7e-06 56.6 53 52.8
Dinv32748 Davidia involucrata HOM05D004188 ORTHO05D004445 2.2e-06 56.2 43 60.5
Nitab4.5_0011114g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 2.9e-06 55.8 48 52.1
Cc01_g11150 Coffea canephora HOM05D004188 ORTHO05D004445 3.8e-06 55.5 53 52.8
Hma1.2p1_1031F.1_g250070 Hydrangea macrophylla HOM05D004188 ORTHO05D004445 3.8e-06 55.5 53 54.7
TWI31G0432 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 3.8e-06 55.5 54 53.7
Nitab4.5_0000650g0240 Nicotiana tabacum HOM05D004188 ORTHO05D004445 5.0e-06 55.1 48 52.1
Actinidia24099 Actinidia chinensis HOM05D004188 ORTHO05D004445 6.5e-06 54.7 44 56.8
Thhalv10002916m.g Eutrema salsugineum HOM05D004188 ORTHO05D004445 6.5e-06 54.7 44 52.3
Aqoxy1G01243 Aquilegia oxysepala HOM05D004188 ORTHO05D004445 8.5e-06 54.3 47 57.4
HPP92_008764 Vanilla planifolia HOM05D004188 ORTHO05D004445 8.5e-06 54.3 50 54.0


User provided reference genes

Program Settings