Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 3659.8 1921 100.0
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 3164.0 1927 86.5
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 2886.7 1948 79.4
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2882.8 1941 79.4
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2882.0 1940 79.1
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2842.8 1924 78.8
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2822.0 1945 77.4
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2821.2 1943 77.4
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2819.6 1953 78.1
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2776.9 1946 77.2
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 2519.2 1979 69.6
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 2499.5 1962 69.4
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 2449.5 2106 65.0
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 2434.4 1960 68.0
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 2430.2 1971 67.3
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 2425.2 1975 66.8
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 2419.4 2001 66.3
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 2398.2 1956 67.2
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 2375.9 2001 65.6
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 2367.4 1997 65.3
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 2361.3 1962 66.3
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2350.1 1951 65.6
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 2346.6 1950 65.3
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 2341.6 2002 64.5
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2340.8 1951 65.2
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 2235.7 1944 63.5
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 2201.0 1969 61.6
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 2192.2 1944 62.0
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 2185.6 1937 62.1
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 2181.8 2010 62.0
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 2172.5 1973 61.6
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 2171.0 1951 62.3
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 2170.2 2003 61.1
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 2165.2 1549 71.5
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 2150.9 1958 60.9
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 2150.2 1949 61.6
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 2145.2 1975 59.4
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 2143.2 1951 61.1
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 2143.2 2028 59.6
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 2142.5 1946 60.8
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2141.7 1545 71.3
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 2136.7 1979 61.2
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 2133.6 1603 68.6
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 2127.4 1961 60.5
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 2121.3 1962 61.5
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 2115.1 1971 60.1
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2114.3 1997 59.7
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 2088.9 1991 58.5
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 2082.8 1994 59.5
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 2055.4 1969 60.2
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 2040.4 2055 57.2
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 2031.5 1968 57.5
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 2020.4 1984 58.1
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 2015.7 2094 55.0
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 1998.8 1604 65.2
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1969.1 1954 57.4
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 1969.1 2131 55.0
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 1949.1 1997 55.5
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 1946.0 1967 56.0
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 1939.9 1483 68.4
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1929.8 1984 55.7
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 1929.1 1988 55.3
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 1929.1 1980 55.9
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 1927.1 1939 56.1
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 1923.3 1693 63.9
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 1918.3 1818 58.0
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1917.9 2054 54.6
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 1914.8 1966 55.4
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1911.0 1945 56.3
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1910.6 1834 57.5
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1908.3 1941 55.3
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1904.0 2019 54.7
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1903.3 1877 56.0
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1889.4 1951 54.9
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1887.8 2007 54.7
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 1885.2 1955 55.4
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1879.0 1336 72.3
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1868.2 1608 61.6
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 1860.5 1961 54.3
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 1860.5 1982 54.2
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1818.1 1956 53.4
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 1798.1 1993 51.8
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1766.9 1978 51.6
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 1765.4 1929 51.9
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 1756.1 1966 51.6
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 1748.8 1980 51.5
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1745.7 1970 53.1
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1739.5 1945 51.8
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1737.6 1830 55.0
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1737.6 1830 55.0
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 1737.6 1950 51.8
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1731.1 1956 52.0
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1728.4 1959 51.4
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1723.8 1244 71.6
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1687.9 1731 54.8
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1647.5 1480 59.2
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1645.9 1942 50.3
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1634.8 1945 49.5
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1622.4 1211 71.4
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1619.8 1942 49.6
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 0.0e+00 1156.4 1700 41.5
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 0.0e+00 1093.6 1880 38.1
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 0.0e+00 1088.2 1130 57.2
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 0.0e+00 1082.8 975 60.0
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.4e-308 1063.9 1688 40.2
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 2.1e-304 1050.0 1933 37.2
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 8.1e-304 1048.1 1967 38.0
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 4.2e-300 1035.8 894 63.0
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 1.3e-298 1030.8 1855 38.6
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 9.7e-289 998.0 1170 51.6
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 2.6e-273 946.8 1106 53.1
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 4.2e-260 902.9 992 54.9
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 7.0e-247 859.0 1230 45.0
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 6.1e-243 845.9 1079 49.4
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.6e-230 804.7 1464 36.1
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 2.3e-221 774.2 1775 31.4
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 7.8e-206 722.6 577 65.3
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 3.8e-200 703.7 542 68.6
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 2.4e-191 674.5 1168 39.1
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 1.3e-179 635.6 470 70.9
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 4.2e-151 540.8 666 47.3
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 1.2e-148 532.7 831 42.7
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 2.3e-141 508.4 569 49.9
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 2.7e-137 495.0 563 48.3
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.8e-133 482.3 541 50.5
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 1.3e-131 476.1 754 46.9
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 3.1e-101 375.2 284 68.0
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 3.0e-80 305.4 456 43.0
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 9.0e-77 293.9 381 47.2
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 1.6e-62 246.5 382 40.8
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 1.9e-58 233.0 248 52.0
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 3.9e-56 225.3 540 33.7
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 1.5e-52 213.4 723 32.5
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 1.7e-46 193.4 349 39.0
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 5.3e-45 188.3 195 49.7
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 5.3e-45 188.3 138 65.2
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.5e-42 180.3 226 43.8
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 1.8e-40 173.3 561 32.3
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 2.0e-36 159.8 1195 22.5
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 1.0e-35 157.5 164 51.8
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 1.4e-32 147.1 163 50.9
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 5.7e-31 141.7 164 47.6
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 1.7e-30 140.2 115 64.3
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 7.0e-29 134.8 371 33.4
FAN06G3220 Fragaria x ananassa HOM05D011336 ORTHO05D017014 3.5e-28 132.5 197 50.8
FvH4_7g01070 Fragaria vesca HOM05D011336 ORTHO05D017014 4.5e-28 132.1 152 57.9
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 1.9e-26 126.7 80 72.5
FAN07G2918 Fragaria x ananassa HOM05D004392 ORTHO05D004846 5.5e-26 125.2 141 56.7
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 5.5e-26 125.2 96 68.8
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 1.2e-25 124.0 121 57.0
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 1.2e-25 124.0 85 76.5
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 2.1e-25 123.2 119 56.3
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 6.1e-25 121.7 403 26.6
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 8.8e-24 117.9 219 41.1
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 5.7e-23 115.2 140 50.0
RcHm_v2.0_Chr1g0361181 Rosa chinensis HOM05D004392 ORTHO05D004846 9.1e-21 107.8 146 47.9
Psat3g157320 Pisum sativum HOM05D004392 ORTHO05D004846 1.3e-19 104.0 165 44.2
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 1.4e-16 94.0 133 42.9
FAN27G1439 Fragaria x ananassa HOM05D011336 ORTHO05D017014 8.9e-16 91.3 314 34.1
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 5.7e-15 88.6 104 52.9
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 3.5e-12 79.3 55 65.5
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 4.5e-12 79.0 100 48.0
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 1.0e-11 77.8 71 57.7
FAN09G4865 Fragaria x ananassa HOM05D011336 ORTHO05D017014 1.7e-11 77.0 247 38.9
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 8.6e-11 74.7 70 54.3
FAN07G2805 Fragaria x ananassa HOM05D011336 ORTHO05D022575 1.5e-10 73.9 293 34.1
FAN18G0882 Fragaria x ananassa HOM05D011336 ORTHO05D022575 5.6e-10 72.0 285 35.4
Phvul.002G075100 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 7.3e-10 71.6 152 40.8
FAN25G1306 Fragaria x ananassa HOM05D011336 ORTHO05D017014 6.8e-08 65.1 125 44.8
Psat0s2154g0040 Pisum sativum HOM05D003471 ORTHO05D004079 8.9e-08 64.7 59 59.3
Psat3g007520 Pisum sativum HOM05D000467 ORTHO05D000379 3.4e-07 62.8 132 34.8
FvH4_6g13732 Fragaria vesca HOM05D011336 ORTHO05D022575 5.8e-07 62.0 285 33.0
FAN11G2008 Fragaria x ananassa HOM05D011336 ORTHO05D022575 4.9e-06 58.9 277 35.7
Phvul.011G172900 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 8.3e-06 58.2 152 38.2


User provided reference genes

Program Settings