Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 6.7e-298 1026.5 509 100.0
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 9.5e-276 953.0 506 92.1
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.8e-275 951.4 506 91.9
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 4.7e-275 950.7 506 91.9
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 1.5e-273 945.7 512 92.6
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 4.4e-273 944.1 507 91.5
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.5e-273 943.3 507 91.7
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 7.5e-273 943.3 507 91.7
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 1.5e-260 902.5 507 89.2
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.7e-254 881.7 507 86.6
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 7.8e-254 880.2 510 85.3
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 5.6e-252 874.0 518 84.9
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 2.8e-251 871.7 510 86.5
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 5.2e-250 867.5 516 84.5
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 3.7e-248 861.3 501 86.2
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 4.1e-247 857.8 503 84.7
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 2.3e-245 852.0 508 84.3
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 3.0e-245 851.7 511 84.3
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 5.1e-245 850.9 503 85.1
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 6.6e-245 850.5 504 84.7
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 2.5e-244 848.6 504 83.3
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 3.1e-242 841.6 509 82.7
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 6.8e-242 840.5 503 84.3
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 7.6e-241 837.0 509 82.1
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 9.9e-241 836.6 512 83.0
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 2.2e-240 835.5 510 82.0
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 5.4e-239 830.9 510 81.6
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.2e-238 829.7 517 80.9
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 2.1e-238 828.9 517 80.7
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 2.7e-238 828.6 501 82.8
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 6.0e-238 827.4 500 82.2
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 1.3e-237 826.2 508 82.3
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 2.3e-237 825.5 530 79.6
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 5.6e-236 820.8 482 85.5
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 2.1e-235 818.9 529 79.6
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 2.1e-235 818.9 510 81.6
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 1.8e-234 815.8 508 80.7
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 5.2e-234 814.3 518 80.3
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 1.2e-233 813.1 510 80.0
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 4.9e-232 807.7 481 84.4
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.1e-231 806.6 517 80.9
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 1.4e-231 806.2 542 76.4
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 7.1e-231 803.9 494 82.2
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 7.1e-231 803.9 512 80.5
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 1.2e-230 803.1 513 80.3
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 2.1e-230 802.4 513 79.7
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.1e-230 802.4 511 79.6
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 3.5e-230 801.6 512 79.5
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 6.0e-230 800.8 511 79.6
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 8.7e-229 797.0 512 79.1
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 1.5e-228 796.2 506 79.6
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 4.3e-228 794.7 510 79.6
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 5.6e-228 794.3 498 80.9
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 2.1e-227 792.3 514 77.4
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 1.8e-226 789.3 505 79.4
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 4.0e-226 788.1 500 78.2
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 1.2e-225 786.6 502 78.5
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 2.6e-225 785.4 510 79.0
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 3.4e-225 785.0 467 84.6
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 7.6e-225 783.9 458 85.8
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 7.6e-225 783.9 545 74.9
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 8.4e-224 780.4 511 79.6
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 1.4e-223 779.6 513 78.2
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 2.4e-223 778.9 506 78.5
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 2.7e-222 775.4 493 80.7
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 1.0e-221 773.5 500 77.4
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 1.0e-221 773.5 503 76.9
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 4.3e-220 768.1 514 76.3
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 7.4e-220 767.3 513 76.6
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 2.8e-219 765.4 511 76.3
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 6.2e-219 764.2 514 77.6
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 6.2e-219 764.2 512 75.6
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 1.1e-218 763.5 545 73.2
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.6e-217 757.3 413 90.6
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 7.6e-217 757.3 591 68.9
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 9.9e-217 756.9 495 76.6
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 4.9e-216 754.6 501 76.0
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 4.9e-216 754.6 501 76.0
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 6.4e-216 754.2 512 76.0
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 1.1e-215 753.4 505 76.2
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 7.1e-215 750.7 502 75.1
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 1.5e-212 743.0 431 87.2
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 5.6e-212 741.1 518 73.4
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 5.6e-212 741.1 490 75.7
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.1e-210 736.9 478 77.2
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 5.3e-210 734.6 494 77.5
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 5.5e-207 724.5 501 73.7
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 1.6e-206 723.0 496 73.8
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 8.7e-205 717.2 515 72.6
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 5.7e-204 714.5 509 72.9
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 7.4e-204 714.1 473 76.7
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.3e-203 713.4 522 71.1
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 8.2e-203 710.7 473 76.3
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.0e-200 703.7 510 70.6
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 1.6e-198 696.4 503 72.2
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.4e-186 656.8 471 73.2
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 4.1e-186 655.2 522 67.2
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 1.5e-185 653.3 524 65.5
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 3.2e-183 645.6 430 75.6
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 3.8e-176 622.1 509 62.7
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 1.5e-175 620.2 544 58.6
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 5.7e-172 608.2 376 81.9
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 1.1e-170 604.0 494 64.4
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 3.1e-170 602.4 487 64.3
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 7.0e-170 601.3 487 64.3
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 6.5e-168 594.7 453 69.1
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 4.7e-166 588.6 365 84.1
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 1.6e-161 573.5 363 82.1
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 4.5e-161 572.0 365 80.5
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 1.1e-159 567.4 340 83.2
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 4.2e-159 565.5 359 81.6
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 7.2e-159 564.7 502 60.0
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.0e-157 560.8 392 74.2
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.8e-154 550.1 477 61.4
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 2.0e-153 546.6 486 58.8
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 2.1e-150 536.6 528 54.7
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 8.9e-149 531.2 498 56.4
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 1.2e-148 530.8 292 88.7
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 7.5e-140 501.5 494 54.5
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 2.1e-137 493.4 337 77.7
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 6.6e-136 488.4 357 72.5
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 4.0e-133 479.2 513 50.5
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 2.2e-131 473.4 425 62.8
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.6e-116 423.3 472 54.0
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 8.4e-115 418.3 459 48.4
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 7.1e-114 415.2 316 69.9
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 1.4e-109 401.0 365 63.3
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.4e-90 337.8 291 64.3
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.2e-90 336.7 315 61.0
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 1.2e-89 334.7 232 72.8
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.3e-88 331.3 164 95.1
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.3e-79 300.1 219 68.0
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 1.7e-78 297.7 245 62.0
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 3.0e-72 276.9 145 90.3
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 5.7e-71 272.7 397 40.6
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 4.5e-68 263.1 148 85.8
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 3.6e-65 253.4 146 80.8
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 5.2e-64 249.6 216 65.7
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 8.2e-62 242.3 308 43.2
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 1.4e-53 214.9 327 41.3
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 5.7e-47 193.0 165 61.2
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 4.7e-41 173.3 100 80.0
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 9.8e-39 165.6 193 51.8
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.2e-38 164.5 100 76.0
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 6.8e-32 142.9 141 61.7
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 1.2e-28 132.1 68 88.2
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 3.9e-27 127.1 334 29.3
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 3.9e-19 100.5 74 63.5
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 1.2e-17 95.5 65 73.8
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 2.9e-14 84.3 72 61.1
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 4.9e-14 83.6 45 86.7
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 4.6e-12 77.0 38 92.1
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 4.3e-10 70.5 64 59.4
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 9.6e-10 69.3 44 68.2
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 8.1e-09 66.2 88 52.3
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.1e-08 65.9 46 60.9


User provided reference genes

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