Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G160200 Prunus persica HOM05D000602 ORTHO05D017466 3.8e-35 151.0 77 100.0
Prupe.2G160000 Prunus persica HOM05D000602 ORTHO05D002573 1.5e-20 102.4 57 87.7
MD07G1129000 Malus domestica HOM05D000602 ORTHO05D002573 5.9e-20 100.5 59 83.1
RcHm_v2.0_Chr1g0353381 Rosa chinensis HOM05D000602 ORTHO05D002573 1.7e-19 99.0 59 76.3
MD01G1052400 Malus domestica HOM05D000602 ORTHO05D002573 5.0e-19 97.4 59 79.7
TAR374G0975 Trochodendron aralioides HOM05D000602 ORTHO05D002573 8.5e-19 96.7 59 78.0
PGR031G1425 Punica granatum HOM05D000602 ORTHO05D002573 1.1e-18 96.3 59 76.3
Eucgr.D02251 Eucalyptus grandis HOM05D000602 ORTHO05D002573 1.9e-18 95.5 59 76.3
GSVIVG01026824001 Vitis vinifera HOM05D000602 ORTHO05D002573 2.5e-18 95.1 59 78.0
TWI59G0725 Tripterygium wilfordii HOM05D000602 ORTHO05D002573 3.2e-18 94.7 59 78.0
TWI23G1023 Tripterygium wilfordii HOM05D000602 ORTHO05D002573 5.5e-18 94.0 59 76.3
Thecc.01G365100 Theobroma cacao HOM05D000602 ORTHO05D002573 7.2e-18 93.6 59 76.3
FAN10G2205 Fragaria x ananassa HOM05D000602 ORTHO05D002573 9.3e-18 93.2 59 74.6
FAN10G4318 Fragaria x ananassa HOM05D000602 ORTHO05D002573 9.3e-18 93.2 59 74.6
QL08p049812 Quercus lobata HOM05D000602 ORTHO05D002573 9.3e-18 93.2 58 77.6
Haze_15462 Corylus avellana HOM05D000602 ORTHO05D002573 1.2e-17 92.8 59 74.6
Ciclev10019380m.g Citrus clementina HOM05D000602 ORTHO05D002573 1.6e-17 92.4 59 74.6
Dinv43780 Davidia involucrata HOM05D000602 ORTHO05D002573 2.1e-17 92.0 59 74.6
Duzib138G1809 Durio zibethinus HOM05D000602 ORTHO05D002573 2.1e-17 92.0 59 74.6
FvH4_7g13590 Fragaria vesca HOM05D000602 ORTHO05D002573 2.1e-17 92.0 59 74.6
Manes.01G260100 Manihot esculenta HOM05D000602 ORTHO05D002573 2.1e-17 92.0 59 76.3
CSS0037990 Camellia sinensis var. sinensis HOM05D000602 ORTHO05D002573 2.7e-17 91.7 59 74.6
Lalb_Chr17g0339901 Lupinus albus HOM05D000602 ORTHO05D002573 3.6e-17 91.3 56 80.4
MBI18_g09780_MAGBIO Magnolia biondii HOM05D000602 ORTHO05D002573 3.6e-17 91.3 59 71.2
Nn1g01428 Nelumbo nucifera HOM05D000602 ORTHO05D002573 3.6e-17 91.3 59 69.5
Ca_23726_v3 Cicer arietinum L. HOM05D000602 ORTHO05D002573 4.6e-17 90.9 59 78.0
Sabra02G0123900 Salix brachista HOM05D000602 ORTHO05D002573 4.6e-17 90.9 59 76.3
Aqoxy5G03954 Aquilegia oxysepala HOM05D000602 ORTHO05D002573 6.1e-17 90.5 59 72.9
HanXRQChr03g0093501 Helianthus annuus HOM05D000602 ORTHO05D002573 6.1e-17 90.5 59 72.9
Medtr8g032040 Medicago truncatula HOM05D000602 ORTHO05D002573 6.1e-17 90.5 59 78.0
Phvul.010G094700 Phaseolus vulgaris HOM05D000602 ORTHO05D002573 6.1e-17 90.5 59 76.3
VMungo0331G0435 Vigna mungo HOM05D000602 ORTHO05D002573 6.1e-17 90.5 59 76.3
Cpa.g.sc18.186 Carica papaya HOM05D000602 ORTHO05D002573 7.9e-17 90.1 59 71.2
ClCG06G000010 Citrullus lanatus HOM05D000602 ORTHO05D002573 7.9e-17 90.1 59 71.2
MELO3C022537.2 Cucumis melo HOM05D000602 ORTHO05D002573 7.9e-17 90.1 59 71.2
Duzib268G0618 Durio zibethinus HOM05D000602 ORTHO05D002573 7.9e-17 90.1 59 72.9
COL.COLO4_12663 Corchorus olitorius HOM05D000602 ORTHO05D002573 1.0e-16 89.7 59 74.6
Lsat_1_v5_gn_3_136701 Lactuca sativa HOM05D000602 ORTHO05D002573 1.0e-16 89.7 59 72.9
Aqoxy7G00370 Aquilegia oxysepala HOM05D000602 ORTHO05D002573 1.3e-16 89.4 59 71.2
CsaV3_6G005750 Cucumis sativus L. HOM05D000602 ORTHO05D002573 1.3e-16 89.4 59 71.2
Glyma.03G014600 Glycine max HOM05D000602 ORTHO05D002573 1.3e-16 89.4 59 74.6
arahy.Tifrunner.gnm1.ann1.4G7KVK Arachis hypogaea HOM05D000602 ORTHO05D002573 1.8e-16 89.0 59 74.6
Lsat_1_v5_gn_7_5301 Lactuca sativa HOM05D000602 ORTHO05D002573 1.8e-16 89.0 59 72.9
Rhsim07G0018800 Rhododendron simsii HOM05D000602 ORTHO05D002573 1.8e-16 89.0 59 71.2
BcaB01g02259 Brassica carinata HOM05D000602 ORTHO05D002573 2.3e-16 88.6 59 66.1
BcaC01g06869 Brassica carinata HOM05D000602 ORTHO05D002573 2.3e-16 88.6 59 66.1
BcaNung05356 Brassica carinata HOM05D000602 ORTHO05D002573 2.3e-16 88.6 59 66.1
A03p32130 Brassica napus HOM05D000602 ORTHO05D002573 2.3e-16 88.6 59 66.1
C03p39160 Brassica napus HOM05D000602 ORTHO05D002573 2.3e-16 88.6 59 66.1
BolC3t16186H Brassica oleracea HOM05D000602 ORTHO05D002573 2.3e-16 88.6 59 66.1
BraA03t12383Z Brassica rapa HOM05D000602 ORTHO05D002573 2.3e-16 88.6 59 66.1
ECA240G3358 Erigeron canadensis HOM05D000602 ORTHO05D002573 2.3e-16 88.6 59 69.5
Aa31LG5G420 Aethionema arabicum HOM05D000602 ORTHO05D002573 3.0e-16 88.2 59 66.1
BcaC04g24160 Brassica carinata HOM05D000602 ORTHO05D002573 3.0e-16 88.2 59 66.1
BolC9t52982H Brassica oleracea HOM05D000602 ORTHO05D002573 3.0e-16 88.2 59 66.1
BraA09t35719Z Brassica rapa HOM05D000602 ORTHO05D002573 3.0e-16 88.2 59 66.1
Gohir.D07G149300 Gossypium hirsutum HOM05D000602 ORTHO05D002573 3.0e-16 88.2 59 71.2
Gorai.001G170700 Gossypium raimondii HOM05D000602 ORTHO05D002573 3.0e-16 88.2 59 71.2
THA.LOC104801455 Tarenaya hassleriana HOM05D000602 ORTHO05D002573 3.0e-16 88.2 59 67.8
Lj3g0018490 Lotus japonicus HOM05D000602 ORTHO05D002573 3.9e-16 87.8 59 74.6
PSO478G4088 Papaver somniferum HOM05D000602 ORTHO05D002573 3.9e-16 87.8 58 67.2
PSO782G2006 Papaver somniferum HOM05D000602 ORTHO05D002573 3.9e-16 87.8 58 67.2
Potri.002G156000 Populus trichocarpa HOM05D000602 ORTHO05D002573 3.9e-16 87.8 59 72.9
Sp6g00610 Schrenkiella parvula HOM05D000602 ORTHO05D002573 3.9e-16 87.8 59 66.1
Atru.chr5.443 Acer truncatum HOM05D000602 ORTHO05D002573 5.1e-16 87.4 59 71.2
CiPaw.01G056400 Carya illinoinensis HOM05D000602 ORTHO05D002573 5.1e-16 87.4 59 72.9
AT4G00570 Arabidopsis thaliana HOM05D000602 ORTHO05D002573 6.7e-16 87.0 59 66.1
Carub.0006s3665 Capsella rubella HOM05D000602 ORTHO05D002573 6.7e-16 87.0 59 64.4
Migut.B01710 Erythranthe guttata HOM05D000602 ORTHO05D002573 6.7e-16 87.0 59 67.8
Lalb_Chr10g0097281 Lupinus albus HOM05D000602 ORTHO05D002573 6.7e-16 87.0 59 74.6
Sed0013968 Sechium edule HOM05D000602 ORTHO05D002573 6.7e-16 87.0 59 69.5
unitig_0.g1279 Utricularia gibba HOM05D000602 ORTHO05D002573 6.7e-16 87.0 59 67.8
CANSAT56G0553 Cannabis sativa HOM05D000602 ORTHO05D002573 8.7e-16 86.7 59 72.9
Glyma.07G074700 Glycine max HOM05D000602 ORTHO05D002573 8.7e-16 86.7 59 72.9
Gohir.A07G143500 Gossypium hirsutum HOM05D000602 ORTHO05D002573 8.7e-16 86.7 59 71.2
CSS0036160 Camellia sinensis var. sinensis HOM05D000602 ORTHO05D002573 1.1e-15 86.3 59 72.9
CSS0038767 Camellia sinensis var. sinensis HOM05D000602 ORTHO05D002573 1.1e-15 86.3 59 72.9
HanXRQChr06g0169901 Helianthus annuus HOM05D000602 ORTHO05D002573 1.1e-15 86.3 59 69.5
Peaxi162Scf00397g00526 Petunia axillaris HOM05D000602 ORTHO05D002573 1.1e-15 86.3 57 70.2
AL6G52860 Arabidopsis lyrata HOM05D000602 ORTHO05D002573 1.5e-15 85.9 59 64.4
Nitab4.5_0006669g0030 Nicotiana tabacum HOM05D000602 ORTHO05D002573 1.5e-15 85.9 57 71.9
Nitab4.5_0029200g0010 Nicotiana tabacum HOM05D000602 ORTHO05D013773 1.5e-15 85.9 57 71.9
THA.LOC104817017 Tarenaya hassleriana HOM05D000602 ORTHO05D002573 1.5e-15 85.9 59 66.1
Cc02_g37470 Coffea canephora HOM05D000602 ORTHO05D002573 2.5e-15 85.1 59 72.9
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 3.3e-15 84.7 59 66.1
EL10Ac1g00523 Beta vulgaris HOM05D000602 ORTHO05D002573 3.3e-15 84.7 59 71.2
PGSC0003DMG401000020 Solanum tuberosum HOM05D000602 ORTHO05D002573 4.3e-15 84.3 57 70.2
Potri.014G079900 Populus trichocarpa HOM05D000602 ORTHO05D002573 5.7e-15 84.0 59 69.5
Solyc01g094200.4 Solanum lycopersicum HOM05D000602 ORTHO05D002573 5.7e-15 84.0 57 70.2
Sopen01g038000 Solanum pennellii HOM05D000602 ORTHO05D002573 5.7e-15 84.0 57 70.2
CAN.G78.18 Capsicum annuum HOM05D000602 ORTHO05D002573 7.4e-15 83.6 57 68.4
HanXRQChr04g0121671 Helianthus annuus HOM05D000602 ORTHO05D002573 7.4e-15 83.6 59 69.5
Sed0021943 Sechium edule HOM05D000602 ORTHO05D002573 9.7e-15 83.2 59 64.4
Actinidia38308 Actinidia chinensis HOM05D000602 ORTHO05D002573 1.3e-14 82.8 59 66.1
arahy.Tifrunner.gnm1.ann1.EN2TM4 Arachis hypogaea HOM05D000602 ORTHO05D017466 1.3e-14 82.8 59 69.5
CARHR248740 Cardamine hirsuta HOM05D000602 ORTHO05D002573 1.3e-14 82.8 59 61.0
FAN06G1738 Fragaria x ananassa HOM05D000602 ORTHO05D002573 1.3e-14 82.8 54 72.2
FAN06G1931 Fragaria x ananassa HOM05D000602 ORTHO05D002573 1.3e-14 82.8 54 72.2
Oeu014685.1 Olea europaea HOM05D000602 ORTHO05D002573 1.3e-14 82.8 59 69.5
TPR.G9812 Trifolium pratense HOM05D000602 ORTHO05D002573 1.3e-14 82.8 59 71.2
Lj9C579T5 Lonicera japonica HOM05D000602 ORTHO05D002573 2.8e-14 81.6 59 64.4
ATR0680G410 Amborella trichopoda HOM05D000602 ORTHO05D002573 3.7e-14 81.3 59 69.5
CDE04G1559 Ceratophyllum demersum HOM05D000602 ORTHO05D002573 3.7e-14 81.3 59 66.1
SGA_v2.0_scaffold115G32164 Striga asiatica HOM05D000602 ORTHO05D002573 3.7e-14 81.3 59 64.4
HPP92_002420 Vanilla planifolia HOM05D000602 ORTHO05D017466 4.8e-14 80.9 59 66.1
HPP92_002427 Vanilla planifolia HOM05D000602 ORTHO05D017466 4.8e-14 80.9 59 66.1
arahy.Tifrunner.gnm1.ann1.Q65WP5 Arachis hypogaea HOM05D000602 ORTHO05D002573 6.3e-14 80.5 59 69.5
arahy.Tifrunner.gnm1.ann1.THTJ31 Arachis hypogaea HOM05D000602 ORTHO05D002573 6.3e-14 80.5 59 69.5
Gohir.D11G091100 Gossypium hirsutum HOM05D000602 ORTHO05D002573 8.2e-14 80.1 59 66.1
Gorai.007G097100 Gossypium raimondii HOM05D000602 ORTHO05D002573 8.2e-14 80.1 59 66.1
Zm00001eb220780 Zea mays HOM05D000602 ORTHO05D002573 8.2e-14 80.1 59 64.4
TPR.G22745 Trifolium pratense HOM05D000602 ORTHO05D002573 1.4e-13 79.3 59 67.8
ECA236G4524 Erigeron canadensis HOM05D000602 ORTHO05D002573 1.8e-13 79.0 59 62.7
Ah.05g176410 Amaranthus hybridus HOM05D000602 ORTHO05D002573 2.4e-13 78.6 59 66.1
Gohir.A11G082400 Gossypium hirsutum HOM05D000602 ORTHO05D002573 3.1e-13 78.2 59 64.4
MSTRG.20809 Avicennia marina HOM05D000602 ORTHO05D002573 4.1e-13 77.8 59 64.4
SGA_v2.0_scaffold277G46677 Striga asiatica HOM05D000602 ORTHO05D002573 4.1e-13 77.8 54 66.7
Phvul.008G068700 Phaseolus vulgaris HOM05D000602 ORTHO05D002573 6.9e-13 77.0 59 67.8
VMungo1383G3458 Vigna mungo HOM05D000602 ORTHO05D002573 1.2e-12 76.3 59 66.1
Glyma.09G262900 Glycine max HOM05D000602 ORTHO05D002573 2.6e-12 75.1 59 66.1
Medtr7g076650 Medicago truncatula HOM05D000602 ORTHO05D002573 3.4e-12 74.7 59 62.7
Psat3g111680 Pisum sativum HOM05D000602 ORTHO05D002573 3.4e-12 74.7 59 66.1
Glyma.18G229300 Glycine max HOM05D000602 ORTHO05D002573 7.7e-12 73.6 59 66.1
CSS0000429 Camellia sinensis var. sinensis HOM05D000602 ORTHO05D017466 1.3e-11 72.8 59 62.7
SEGI_19453 Sequoiadendron giganteum HOM05D000602 ORTHO05D002573 1.3e-11 72.8 59 61.0
Ca_07885_v3 Cicer arietinum L. HOM05D000602 ORTHO05D002573 2.2e-11 72.0 59 62.7
Os10g0503500 Oryza sativa ssp. japonica HOM05D000602 ORTHO05D002573 2.2e-11 72.0 59 54.2
Cfa003960 Carpinus fangiana HOM05D000602 ORTHO05D002573 5.0e-11 70.9 50 72.0
Os07g0496200 Oryza sativa ssp. japonica HOM05D000602 ORTHO05D002573 6.1e-09 63.9 55 54.5
CBR_g3306 Chara braunii HOM05D000602 ORTHO05D002573 7.9e-09 63.5 55 56.4
Ah.05g177590 Amaranthus hybridus HOM05D000602 ORTHO05D002573 1.8e-08 62.4 55 52.7
Zm00001eb321980 Zea mays HOM05D000602 ORTHO05D002573 1.8e-08 62.4 55 54.5
CBR_g17566 Chara braunii HOM05D000602 ORTHO05D002573 2.3e-08 62.0 55 52.7
SMO169G0156 Selaginella moellendorffii HOM05D000602 ORTHO05D002573 2.3e-08 62.0 58 50.0
CSS0021350 Camellia sinensis var. sinensis HOM05D000602 ORTHO05D017466 3.9e-08 61.2 59 54.2
ATR0665G658 Amborella trichopoda HOM05D000602 ORTHO05D002573 5.1e-08 60.8 55 56.4
SEGI_15608 Sequoiadendron giganteum HOM05D000602 ORTHO05D013773 6.7e-08 60.5 55 52.7
Dinv32442 Davidia involucrata HOM05D000602 ORTHO05D002573 8.8e-08 60.1 43 72.1
Sabra14G0031600 Salix brachista HOM05D000602 ORTHO05D002573 7.4e-07 57.0 55 49.1
Sc23g0004540 Simmondsia chinensis HOM05D000602 ORTHO05D002573 7.4e-07 57.0 55 52.7
Thecc.10G002100 Theobroma cacao HOM05D000602 ORTHO05D002573 7.4e-07 57.0 57 54.4
EL10Ac1g00707 Beta vulgaris HOM05D000602 ORTHO05D002573 1.3e-06 56.2 55 49.1
CSS0030639 Camellia sinensis var. sinensis HOM05D000602 ORTHO05D002573 1.3e-06 56.2 54 48.1
DCAR_015776 Daucus carota HOM05D000602 ORTHO05D002573 1.3e-06 56.2 55 50.9
TAR375G0311 Trochodendron aralioides HOM05D000602 ORTHO05D002573 1.3e-06 56.2 55 47.3
arahy.Tifrunner.gnm1.ann1.WA2SL2 Arachis hypogaea HOM05D000602 ORTHO05D002573 1.7e-06 55.8 55 49.1
PSO675G0547 Papaver somniferum HOM05D000602 ORTHO05D002573 1.7e-06 55.8 55 47.3
Potri.014G043700 Populus trichocarpa HOM05D000602 ORTHO05D002573 1.7e-06 55.8 55 47.3
PSO717G0095 Papaver somniferum HOM05D000602 ORTHO05D002573 2.2e-06 55.5 55 47.3
Sabra14G0058100 Salix brachista HOM05D000602 ORTHO05D002573 2.2e-06 55.5 47 57.4
Atru.chr5.67 Acer truncatum HOM05D000602 ORTHO05D002573 2.8e-06 55.1 55 47.3
arahy.Tifrunner.gnm1.ann1.HLUA2X Arachis hypogaea HOM05D000602 ORTHO05D002573 2.8e-06 55.1 55 49.1
Lj7C552G9 Lonicera japonica HOM05D000602 ORTHO05D002573 2.8e-06 55.1 55 49.1
Potri.002G135300 Populus trichocarpa HOM05D000602 ORTHO05D002573 2.8e-06 55.1 55 49.1
Prupe.2G114100 Prunus persica HOM05D000602 ORTHO05D002573 2.8e-06 55.1 55 49.1
CANSAT25G0055 Cannabis sativa HOM05D000602 ORTHO05D002573 3.7e-06 54.7 55 45.5
FAN01G1378 Fragaria x ananassa HOM05D000602 ORTHO05D002573 3.7e-06 54.7 55 47.3
FAN03G1294 Fragaria x ananassa HOM05D000602 ORTHO05D002573 3.7e-06 54.7 55 47.3
FAN10G3070 Fragaria x ananassa HOM05D000602 ORTHO05D002573 3.7e-06 54.7 55 47.3
FAN10G3281 Fragaria x ananassa HOM05D000602 ORTHO05D002573 3.7e-06 54.7 55 47.3
Gohir.D04G072100 Gossypium hirsutum HOM05D000602 ORTHO05D002573 3.7e-06 54.7 57 50.9
Gorai.012G081300 Gossypium raimondii HOM05D000602 ORTHO05D002573 3.7e-06 54.7 57 50.9
Sabra02G0105100 Salix brachista HOM05D000602 ORTHO05D002573 3.7e-06 54.7 55 49.1
Gohir.A05G334100 Gossypium hirsutum HOM05D000602 ORTHO05D002573 4.8e-06 54.3 57 49.1
Lj9A549T53 Lonicera japonica HOM05D000602 ORTHO05D002573 4.8e-06 54.3 55 47.3
MBI04_g03332_MAGBIO Magnolia biondii HOM05D000602 ORTHO05D002573 4.8e-06 54.3 52 50.0
Sed0025140 Sechium edule HOM05D000602 ORTHO05D002573 4.8e-06 54.3 55 49.1
Dinv44013 Davidia involucrata HOM05D000602 ORTHO05D017466 6.3e-06 53.9 55 45.5
Duzib128G0914 Durio zibethinus HOM05D000602 ORTHO05D002573 6.3e-06 53.9 57 50.9
Lalb_Chr07g0195171 Lupinus albus HOM05D000602 ORTHO05D002573 6.3e-06 53.9 55 47.3
MBI04_g08846_MAGBIO Magnolia biondii HOM05D000602 ORTHO05D002573 6.3e-06 53.9 52 50.0
MD02G1226700 Malus domestica HOM05D000602 ORTHO05D002573 6.3e-06 53.9 53 49.1
TWI23G0661 Tripterygium wilfordii HOM05D000602 ORTHO05D002573 6.3e-06 53.9 54 48.1
Atru.chr5.37 Acer truncatum HOM05D000602 ORTHO05D002573 8.2e-06 53.5 55 45.5
Actinidia30957 Actinidia chinensis HOM05D000602 ORTHO05D002573 8.2e-06 53.5 55 47.3
CANSAT80G2432 Cannabis sativa HOM05D000602 ORTHO05D002573 8.2e-06 53.5 55 43.6
Cpa.g.sc52.65 Carica papaya HOM05D000602 ORTHO05D002573 8.2e-06 53.5 55 45.5
Mapoly0080s0072 Marchantia polymorpha HOM05D000602 ORTHO05D002573 8.2e-06 53.5 60 43.3


User provided reference genes

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