Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G142300 Prunus persica HOM05D004324 ORTHO05D004840 7.4e-192 673.7 339 100.0
MD07G1119200 Malus domestica HOM05D004324 ORTHO05D004840 3.7e-183 644.8 339 95.3
RcHm_v2.0_Chr1g0349771 Rosa chinensis HOM05D004324 ORTHO05D004840 2.7e-178 628.6 339 92.3
Dinv32365 Davidia involucrata HOM05D004324 ORTHO05D004840 6.1e-178 627.5 335 92.5
Cpa.g.sc145.18 Carica papaya HOM05D004324 ORTHO05D004840 2.3e-177 625.5 339 90.6
FAN03G2758 Fragaria x ananassa HOM05D004324 ORTHO05D004840 1.1e-176 623.2 339 91.2
FAN06G1729 Fragaria x ananassa HOM05D004324 ORTHO05D004840 1.1e-176 623.2 339 91.2
FAN06G4220 Fragaria x ananassa HOM05D004324 ORTHO05D004840 1.1e-176 623.2 339 91.2
THA.LOC104826515 Tarenaya hassleriana HOM05D004324 ORTHO05D004840 4.3e-176 621.3 339 90.9
Thecc.08G173500 Theobroma cacao HOM05D004324 ORTHO05D004840 5.7e-176 620.9 340 90.6
FAN01G0081 Fragaria x ananassa HOM05D004324 ORTHO05D004840 7.4e-176 620.5 339 90.9
Manes.05G047100 Manihot esculenta HOM05D004324 ORTHO05D004840 7.4e-176 620.5 339 90.6
Manes.01G267300 Manihot esculenta HOM05D004324 ORTHO05D004840 9.7e-176 620.2 339 90.0
Ciclev10021006m.g Citrus clementina HOM05D004324 ORTHO05D004840 1.7e-175 619.4 338 89.6
PGR042G0702 Punica granatum HOM05D004324 ORTHO05D004840 1.7e-175 619.4 339 89.1
Hma1.2p1_0442F.1_g153860 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 6.3e-175 617.5 337 89.6
COL.COLO4_24610 Corchorus olitorius HOM05D004324 ORTHO05D004840 1.1e-174 616.7 338 90.2
Thecc.08G173700 Theobroma cacao HOM05D004324 ORTHO05D004840 1.4e-174 616.3 340 89.7
Duzib268G1605 Durio zibethinus HOM05D004324 ORTHO05D004840 3.1e-174 615.1 336 90.2
Nn1g01122 Nelumbo nucifera HOM05D004324 ORTHO05D004840 3.1e-174 615.1 335 90.1
QL08p052832 Quercus lobata HOM05D004324 ORTHO05D004840 6.9e-174 614.0 338 89.9
Gorai.009G265900 Gossypium raimondii HOM05D004324 ORTHO05D004840 9.1e-174 613.6 334 90.4
vmacro13417 Vaccinium macrocarpon HOM05D004324 ORTHO05D004840 9.1e-174 613.6 339 88.8
Duzib177G0253 Durio zibethinus HOM05D004324 ORTHO05D004840 1.2e-173 613.2 336 89.3
Eucgr.E01445 Eucalyptus grandis HOM05D004324 ORTHO05D004840 2.0e-173 612.5 339 89.1
Gohir.D05G254400 Gossypium hirsutum HOM05D004324 ORTHO05D004840 2.0e-173 612.5 334 90.1
CiPaw.01G263900 Carya illinoinensis HOM05D004324 ORTHO05D004840 5.9e-173 610.9 339 88.5
GSVIVG01027662001 Vitis vinifera HOM05D004324 ORTHO05D004840 5.9e-173 610.9 338 88.5
Lj3g0015076 Lotus japonicus HOM05D004324 ORTHO05D004840 7.7e-173 610.5 339 87.0
TAR375G0703 Trochodendron aralioides HOM05D004324 ORTHO05D004840 1.0e-172 610.1 336 89.6
Atru.chr5.282 Acer truncatum HOM05D004324 ORTHO05D004840 1.3e-172 609.8 338 88.8
SalBow5G2819 Salvia bowleyana HOM05D004324 ORTHO05D004840 1.3e-172 609.8 339 87.9
Sc26g0001240 Simmondsia chinensis HOM05D004324 ORTHO05D004840 1.3e-172 609.8 339 88.8
EL10Ac1g00868 Beta vulgaris HOM05D004324 ORTHO05D004840 1.7e-172 609.4 339 88.8
HanXRQChr16g0519961 Helianthus annuus HOM05D004324 ORTHO05D004840 1.7e-172 609.4 335 89.9
Nitab4.5_0000457g0100 Nicotiana tabacum HOM05D004324 ORTHO05D004840 2.2e-172 609.0 339 87.6
Cc02_g24110 Coffea canephora HOM05D004324 ORTHO05D004840 2.9e-172 608.6 339 88.5
Aa31LG9G14610 Aethionema arabicum HOM05D004324 ORTHO05D004840 3.8e-172 608.2 341 88.3
RcHm_v2.0_Chr1g0349751 Rosa chinensis HOM05D004324 ORTHO05D004840 5.0e-172 607.8 338 90.2
Migut.B01616 Erythranthe guttata HOM05D004324 ORTHO05D004840 1.1e-171 606.7 339 87.6
Sopen01g036910 Solanum pennellii HOM05D004324 ORTHO05D004840 1.1e-171 606.7 339 87.6
Peaxi162Scf00013g03018 Petunia axillaris HOM05D004324 ORTHO05D004840 1.4e-171 606.3 339 87.6
Sp6g08900 Schrenkiella parvula HOM05D004324 ORTHO05D004840 1.4e-171 606.3 339 88.5
Solyc01g091160.4 Solanum lycopersicum HOM05D004324 ORTHO05D004840 1.4e-171 606.3 339 87.6
Actinidia12245 Actinidia chinensis HOM05D004324 ORTHO05D004840 1.9e-171 605.9 339 88.5
Ca_19938_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 1.9e-171 605.9 339 87.3
Aqoxy7G00682 Aquilegia oxysepala HOM05D004324 ORTHO05D004840 2.5e-171 605.5 338 88.2
AT4G08900 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 2.5e-171 605.5 340 88.8
ECA234G2725 Erigeron canadensis HOM05D004324 ORTHO05D004840 3.2e-171 605.1 339 88.2
Nitab4.5_0010616g0050 Nicotiana tabacum HOM05D004324 ORTHO05D004840 4.2e-171 604.7 339 87.0
Potri.002G146200 Populus trichocarpa HOM05D004324 ORTHO05D004840 4.2e-171 604.7 339 88.5
AL6G41660 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 5.5e-171 604.4 340 88.5
CAN.G388.33 Capsicum annuum HOM05D004324 ORTHO05D004840 5.5e-171 604.4 338 87.3
TWI59G0845 Tripterygium wilfordii HOM05D004324 ORTHO05D004840 5.5e-171 604.4 339 87.6
CARHR259850 Cardamine hirsuta HOM05D004324 ORTHO05D004840 7.2e-171 604.0 340 88.8
Rhsim07G0029000 Rhododendron simsii HOM05D004324 ORTHO05D004840 9.4e-171 603.6 362 83.7
TPR.G7599 Trifolium pratense HOM05D004324 ORTHO05D004840 9.4e-171 603.6 339 86.7
CANSAT56G0022 Cannabis sativa HOM05D004324 ORTHO05D004840 1.2e-170 603.2 339 88.5
Carub.0006s2738 Capsella rubella HOM05D004324 ORTHO05D004840 1.6e-170 602.8 340 88.8
PSO782G5694 Papaver somniferum HOM05D004324 ORTHO05D004840 1.6e-170 602.8 336 88.7
Lsat_1_v5_gn_4_43080 Lactuca sativa HOM05D004324 ORTHO05D004840 2.7e-170 602.1 339 87.6
Lalb_Chr12g0208141 Lupinus albus HOM05D004324 ORTHO05D004840 4.7e-170 601.3 339 87.0
MSTRG.17174 Avicennia marina HOM05D004324 ORTHO05D004840 7.9e-170 600.5 339 85.8
BcaB01g02843 Brassica carinata HOM05D004324 ORTHO05D004840 1.0e-169 600.1 342 87.7
ClCG06G000480 Citrullus lanatus HOM05D004324 ORTHO05D004840 1.4e-169 599.7 339 87.3
PSO478G0881 Papaver somniferum HOM05D004324 ORTHO05D004840 3.0e-169 598.6 336 88.4
Potri.014G067700 Populus trichocarpa HOM05D004324 ORTHO05D004840 3.0e-169 598.6 333 88.9
SGA_v2.0_scaffold153G36989 Striga asiatica HOM05D004324 ORTHO05D004840 5.1e-169 597.8 339 86.7
A03p28290 Brassica napus HOM05D004324 ORTHO05D004840 1.1e-168 596.7 339 87.6
Sc26g0001250 Simmondsia chinensis HOM05D004324 ORTHO05D004840 1.5e-168 596.3 339 87.0
BraA03t12035Z Brassica rapa HOM05D004324 ORTHO05D004840 2.0e-168 595.9 339 87.6
SHI13535 Sapria himalayana HOM05D004324 ORTHO05D004840 2.0e-168 595.9 335 87.5
CsaV3_6G006290 Cucumis sativus L. HOM05D004324 ORTHO05D004840 3.3e-168 595.1 339 86.7
C03p34220 Brassica napus HOM05D004324 ORTHO05D004840 4.4e-168 594.7 339 87.3
AUR62013655 Chenopodium quinoa HOM05D004324 ORTHO05D004840 4.4e-168 594.7 339 84.7
Glyma.01G140200 Glycine max HOM05D004324 ORTHO05D004840 7.4e-168 594.0 339 85.8
BcaC01g04748 Brassica carinata HOM05D004324 ORTHO05D004840 9.7e-168 593.6 339 87.3
BolC3t15731H Brassica oleracea HOM05D004324 ORTHO05D004840 9.7e-168 593.6 339 87.0
Phvul.010G081600 Phaseolus vulgaris HOM05D004324 ORTHO05D004840 1.3e-167 593.2 339 86.1
CSS0015452 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 2.2e-167 592.4 339 86.4
CSS0042374 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 2.2e-167 592.4 339 86.4
DCAR_008551 Daucus carota HOM05D004324 ORTHO05D004840 2.2e-167 592.4 328 88.1
Os04g0106300 Oryza sativa ssp. japonica HOM05D004324 ORTHO05D004840 2.2e-167 592.4 335 87.8
Psat0s3070g0160 Pisum sativum HOM05D004324 ORTHO05D004840 2.2e-167 592.4 339 84.4
Thhalv10028793m.g Eutrema salsugineum HOM05D004324 ORTHO05D004840 8.2e-167 590.5 339 87.9
Oeu055504.4 Olea europaea HOM05D004324 ORTHO05D004840 8.2e-167 590.5 376 79.3
Sed0016777 Sechium edule HOM05D004324 ORTHO05D004840 8.2e-167 590.5 339 86.4
Hund27368 Selenicereus undatus HOM05D004324 ORTHO05D004840 1.1e-166 590.1 328 87.8
CDE04G0300 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 1.4e-166 589.7 327 87.5
Glyma.17G131300 Glycine max HOM05D004324 ORTHO05D004840 1.4e-166 589.7 339 85.8
HPP92_007375 Vanilla planifolia HOM05D004324 ORTHO05D004840 4.1e-166 588.2 335 85.1
AUR62004190 Chenopodium quinoa HOM05D004324 ORTHO05D004840 9.1e-166 587.0 339 83.5
Solyc01g091170.3 Solanum lycopersicum HOM05D004324 ORTHO05D004840 2.0e-165 585.9 339 85.3
Sopen01g036920 Solanum pennellii HOM05D004324 ORTHO05D004840 2.0e-165 585.9 339 85.3
unitig_899.g15094 Utricularia gibba HOM05D004324 ORTHO05D004840 2.6e-165 585.5 328 86.0
ATR0665G432 Amborella trichopoda HOM05D004324 ORTHO05D004840 6.5e-164 580.9 333 84.7
CSS0002473 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 1.9e-163 579.3 315 90.5
CiPaw.02G169300 Carya illinoinensis HOM05D004324 ORTHO05D004840 4.7e-162 574.7 328 85.4
AT4G08870 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 1.1e-160 570.1 342 82.7
arahy.Tifrunner.gnm1.ann1.2VF8XD Arachis hypogaea HOM05D004324 ORTHO05D004840 2.2e-159 565.8 367 78.7
Carub.0006s2736 Capsella rubella HOM05D004324 ORTHO05D004840 3.1e-158 562.0 342 81.0
Haze_16793 Corylus avellana HOM05D004324 ORTHO05D004840 9.1e-158 560.5 353 80.7
Lj3g0002034 Lotus japonicus HOM05D004324 ORTHO05D004840 9.1e-158 560.5 339 80.2
arahy.Tifrunner.gnm1.ann1.J6F3FE Arachis hypogaea HOM05D004324 ORTHO05D004840 2.2e-156 555.8 394 73.9
SEGI_09298 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 3.8e-156 555.1 339 79.4
Mapoly0082s0038 Marchantia polymorpha HOM05D004324 ORTHO05D004840 1.4e-153 546.6 315 84.1
Lj3g0008609 Lotus japonicus HOM05D004324 ORTHO05D004840 2.0e-152 542.7 339 78.8
Glyma.03G028000 Glycine max HOM05D004324 ORTHO05D004840 1.1e-150 537.0 339 76.4
Ah.05g174550 Amaranthus hybridus HOM05D004324 ORTHO05D004840 4.1e-150 535.0 339 76.7
Medtr4g024960 Medicago truncatula HOM05D004324 ORTHO05D004840 7.7e-149 530.8 339 76.4
Lj7A531T56 Lonicera japonica HOM05D004324 ORTHO05D004840 2.2e-148 529.3 339 79.6
Lj3g0012371 Lotus japonicus HOM05D004324 ORTHO05D004840 1.1e-147 526.9 338 76.0
TPR.G7597 Trifolium pratense HOM05D004324 ORTHO05D004840 1.4e-145 520.0 343 75.2
SMO367G0287 Selaginella moellendorffii HOM05D004324 ORTHO05D004840 2.6e-144 515.8 320 78.8
HanXRQChr16g0519941 Helianthus annuus HOM05D004324 ORTHO05D004840 1.8e-137 493.0 336 72.9
Pp3c5_2190 Physcomitrium patens HOM05D004324 ORTHO05D004840 6.8e-137 491.1 313 75.4
CBR_g50887 Chara braunii HOM05D004324 ORTHO05D004840 5.6e-131 471.5 312 72.8
Dinv43690 Davidia involucrata HOM05D004324 ORTHO05D004840 4.6e-125 451.8 339 70.8
COL.COLO4_24608 Corchorus olitorius HOM05D004324 ORTHO05D004840 1.7e-124 449.9 333 70.3
Psat7g231720 Pisum sativum HOM05D004324 ORTHO05D004840 6.6e-124 448.0 319 68.7
Sed0023731 Sechium edule HOM05D004324 ORTHO05D004840 6.8e-121 438.0 252 85.3
Atru.chr5.284 Acer truncatum HOM05D004324 ORTHO05D004840 1.9e-118 429.9 251 84.9
MELO3C022492.2 Cucumis melo HOM05D004324 ORTHO05D004840 1.2e-117 427.2 239 88.3
arahy.Tifrunner.gnm1.ann1.J17N2W Arachis hypogaea HOM05D004324 ORTHO05D004840 5.8e-112 408.3 330 65.8
Hma1.2p1_0375F.1_g138670 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 5.8e-112 408.3 245 84.1
SEGI_04392 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 1.7e-111 406.8 249 80.7
MBI04_g35670_MAGBIO Magnolia biondii HOM05D004324 ORTHO05D004840 5.1e-108 395.2 217 87.6
Medtr4g024940 Medicago truncatula HOM05D004324 ORTHO05D004840 5.1e-108 395.2 231 82.3
FvH4_7g11450 Fragaria vesca HOM05D004324 ORTHO05D004840 7.3e-107 391.3 219 87.7
Zm00001eb418690 Zea mays HOM05D004324 ORTHO05D004840 1.2e-104 384.0 208 90.9
AL6G42680 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 4.4e-96 355.5 194 90.2
Psat6g218040 Pisum sativum HOM05D004324 ORTHO05D004840 9.9e-96 354.4 326 56.7
Gohir.A05G252532 Gossypium hirsutum HOM05D004324 ORTHO05D004840 3.9e-92 342.4 188 87.8
AagrBONN_evm.TU.Sc2ySwM_368.1743 Anthoceros agrestis HOM05D004324 ORTHO05D004840 2.2e-87 326.6 209 75.1
Medtr0088s0100 Medicago truncatula HOM05D004324 ORTHO05D004840 6.4e-87 325.1 321 54.5
SGA_v2.0_scaffold11G05569 Striga asiatica HOM05D004324 ORTHO05D004840 2.9e-79 299.7 242 63.6
Sc26g0001270 Simmondsia chinensis HOM05D004324 ORTHO05D004840 1.6e-77 293.9 171 84.8
Psat6g218080 Pisum sativum HOM05D004324 ORTHO05D004840 5.6e-75 285.4 195 69.2
RcHm_v2.0_Chr1g0349761 Rosa chinensis HOM05D004324 ORTHO05D004840 9.7e-67 258.1 145 86.9
Gohir.A05G252466 Gossypium hirsutum HOM05D004324 ORTHO05D004840 4.8e-66 255.8 135 93.3
AL6G42730 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 2.5e-54 216.9 148 71.6
Psat6g217960 Pisum sativum HOM05D004324 ORTHO05D004840 8.8e-52 208.4 155 65.8
CDE02G4314 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 9.4e-46 188.3 148 69.6
arahy.Tifrunner.gnm1.ann1.V33WN8 Arachis hypogaea HOM05D004324 ORTHO05D004840 9.1e-41 171.8 87 96.6
Actinidia02863 Actinidia chinensis HOM05D004324 ORTHO05D004840 5.5e-38 162.5 102 77.5
Duzib177G0443 Durio zibethinus HOM05D004324 ORTHO05D004840 6.3e-34 149.1 101 77.2
MD02G1206600 Malus domestica HOM05D004324 ORTHO05D004840 1.1e-33 148.3 96 78.1
MD02G1206500 Malus domestica HOM05D004324 ORTHO05D004840 1.4e-33 147.9 74 95.9
SEGI_10460 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 1.4e-33 147.9 104 66.3
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 2.2e-31 140.6 87 79.3
CAN.G23.23 Capsicum annuum HOM05D004324 ORTHO05D004840 5.5e-30 136.0 78 80.8
Duzib106G1980 Durio zibethinus HOM05D004324 ORTHO05D004840 2.0e-24 117.5 127 48.8
Sc26g0001260 Simmondsia chinensis HOM05D004324 ORTHO05D004840 2.3e-23 114.0 127 55.1
Prupe.7G087800 Prunus persica HOM05D004324 ORTHO05D004840 3.3e-22 110.2 124 58.1
Actinidia02867 Actinidia chinensis HOM05D004324 ORTHO05D004840 2.1e-21 107.5 108 54.6
Actinidia31395 Actinidia chinensis HOM05D004324 ORTHO05D004840 1.2e-19 101.7 77 66.2
MCO07G634 Micromonas commoda HOM05D004324 ORTHO05D004840 1.3e-18 98.2 286 26.6
Cfa025533 Carpinus fangiana HOM05D000146 ORTHO05D004840 8.3e-18 95.5 322 26.7
Pp3s30_709 Physcomitrium patens HOM05D004324 ORTHO05D004840 1.8e-17 94.4 236 30.9
Psat0s13993g0040 Pisum sativum HOM05D004324 ORTHO05D004840 2.4e-17 94.0 74 62.2
Ca_28979_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 9.2e-17 92.0 281 29.5
Cfa023222 Carpinus fangiana HOM05D004324 ORTHO05D004840 8.6e-15 85.5 271 29.2
Cfa024978 Carpinus fangiana HOM05D004324 ORTHO05D034102 7.5e-11 72.4 192 29.2
Prupe.2G076400 Prunus persica HOM05D004324 ORTHO05D004840 1.3e-10 71.6 54 70.4
Actinidia02866 Actinidia chinensis HOM05D004324 ORTHO05D004840 6.4e-10 69.3 103 43.7
Medtr4g019730 Medicago truncatula HOM05D000814 ORTHO05D004840 3.2e-09 67.0 42 73.8
Aa31sc49G50 Aethionema arabicum HOM05D004324 ORTHO05D004840 1.6e-08 64.7 45 68.9


User provided reference genes

Program Settings