Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G137700 Prunus persica HOM05D001678 ORTHO05D001698 1.3e-54 216.1 104 100.0
Prupe.1G177900 Prunus persica HOM05D001678 ORTHO05D001698 8.7e-43 176.8 102 84.3
Prupe.7G010100 Prunus persica HOM05D001678 ORTHO05D001698 9.6e-42 173.3 100 85.0
Lj3C974T6 Lonicera japonica HOM05D000034 ORTHO05D001698 2.8e-41 171.8 102 83.3
Lj4C317T2 Lonicera japonica HOM05D000034 ORTHO05D001698 2.8e-41 171.8 102 83.3
Prupe.7G052500 Prunus persica HOM05D001678 ORTHO05D001698 2.1e-36 155.6 102 77.5
Glyma.12G113000 Glycine max HOM05D001678 ORTHO05D001698 3.9e-35 151.4 102 72.5
Glyma.01G110000 Glycine max HOM05D001678 ORTHO05D001698 1.5e-34 149.4 102 71.6
Glyma.01G111800 Glycine max HOM05D001678 ORTHO05D001698 1.5e-34 149.4 102 71.6
Glyma.06G095100 Glycine max HOM05D001678 ORTHO05D001698 1.5e-34 149.4 102 71.6
Glyma.08G218300 Glycine max HOM05D001678 ORTHO05D001698 1.5e-34 149.4 102 71.6
Glyma.10G211500 Glycine max HOM05D001678 ORTHO05D001698 1.5e-34 149.4 102 71.6
Glyma.11G167500 Glycine max HOM05D001678 ORTHO05D001698 1.5e-34 149.4 102 71.6
Glyma.13G184400 Glycine max HOM05D001678 ORTHO05D001698 1.5e-34 149.4 102 71.6
Glyma.14G095600 Glycine max HOM05D001678 ORTHO05D001698 1.5e-34 149.4 102 71.6
Glyma.14G219200 Glycine max HOM05D001678 ORTHO05D001698 1.5e-34 149.4 102 71.6
Glyma.15G150600 Glycine max HOM05D001678 ORTHO05D001698 1.5e-34 149.4 102 71.6
Glyma.15G233800 Glycine max HOM05D001678 ORTHO05D001698 1.5e-34 149.4 102 71.6
Glyma.17G148300 Glycine max HOM05D001678 ORTHO05D001698 1.5e-34 149.4 102 71.6
Glyma.18G175000 Glycine max HOM05D001678 ORTHO05D001698 1.5e-34 149.4 102 71.6
Glyma.19G032300 Glycine max HOM05D001678 ORTHO05D001698 1.5e-34 149.4 102 71.6
Glyma.20G169100 Glycine max HOM05D001678 ORTHO05D001698 1.5e-34 149.4 102 70.6
Glyma.05G193100 Glycine max HOM05D001678 ORTHO05D001698 2.5e-34 148.7 97 73.2
Glyma.07G133600 Glycine max HOM05D001678 ORTHO05D001698 3.3e-34 148.3 102 70.6
Glyma.10G293700 Glycine max HOM05D001678 ORTHO05D001698 3.3e-34 148.3 102 70.6
Glyma.18G292500 Glycine max HOM05D001678 ORTHO05D001698 3.3e-34 148.3 102 70.6
Glyma.04G175200 Glycine max HOM05D001678 ORTHO05D001698 4.3e-34 147.9 102 70.6
Glyma.08G239700 Glycine max HOM05D001678 ORTHO05D001698 4.3e-34 147.9 102 70.6
Glyma.09G168100 Glycine max HOM05D001678 ORTHO05D001698 4.3e-34 147.9 102 70.6
Glyma.14G191800 Glycine max HOM05D001678 ORTHO05D001698 4.3e-34 147.9 102 70.6
Glyma.09G071200 Glycine max HOM05D001678 ORTHO05D001698 5.6e-34 147.5 102 71.6
Glyma.10G131100 Glycine max HOM05D001678 ORTHO05D001698 7.4e-34 147.1 102 70.6
Glyma.10G200900 Glycine max HOM05D001678 ORTHO05D001698 7.4e-34 147.1 102 70.6
Glyma.01G126100 Glycine max HOM05D001678 ORTHO05D001698 1.3e-33 146.4 102 70.6
Glyma.10G128600 Glycine max HOM05D001678 ORTHO05D001698 1.6e-33 146.0 102 70.6
Medtr1g106600 Medicago truncatula HOM05D001678 ORTHO05D001698 1.6e-33 146.0 103 69.9
Medtr6g018520 Medicago truncatula HOM05D001678 ORTHO05D001698 1.6e-33 146.0 103 69.9
Medtr6g025650 Medicago truncatula HOM05D001678 ORTHO05D001698 1.6e-33 146.0 103 69.9
Glyma.17G190600 Glycine max HOM05D001678 ORTHO05D001698 6.2e-33 144.1 102 69.6
Medtr7g111990 Medicago truncatula HOM05D001678 ORTHO05D001698 8.1e-33 143.7 103 68.9
Medtr1g106608 Medicago truncatula HOM05D001678 ORTHO05D001698 1.4e-32 142.9 103 68.0
Lj1C89T9 Lonicera japonica HOM05D001678 ORTHO05D001698 1.3e-30 136.3 80 82.5
Prupe.7G084200 Prunus persica HOM05D001678 ORTHO05D001698 1.7e-30 136.0 79 83.5
Lj8C578G2 Lonicera japonica HOM05D001678 ORTHO05D001698 8.4e-30 133.7 79 83.5
TPR.G27895 Trifolium pratense HOM05D001678 ORTHO05D001698 1.9e-29 132.5 103 65.0
Glyma.09G096200 Glycine max HOM05D001678 ORTHO05D001698 7.1e-29 130.6 79 78.5
Prupe.6G148000 Prunus persica HOM05D001678 ORTHO05D001698 7.1e-29 130.6 77 83.1
Prupe.5G010600 Prunus persica HOM05D001678 ORTHO05D001698 1.8e-27 125.9 79 81.0
Atru.chr2.1461 Acer truncatum HOM05D001678 ORTHO05D001698 1.4e-24 116.3 87 63.2
Prupe.1G170700 Prunus persica HOM05D001678 ORTHO05D001698 4.5e-23 111.3 102 52.9
Prupe.4G168300 Prunus persica HOM05D001678 ORTHO05D001698 4.5e-23 111.3 102 52.9
Atru.chr5.2051 Acer truncatum HOM05D001678 ORTHO05D001698 7.6e-23 110.5 79 68.4
Glyma.06G182400 Glycine max HOM05D001678 ORTHO05D001698 2.9e-22 108.6 102 57.8
Oeu059447.1 Olea europaea HOM05D001678 ORTHO05D001698 1.1e-21 106.7 102 53.9
Oeu015820.2 Olea europaea HOM05D001678 ORTHO05D001698 4.2e-21 104.8 102 53.9
Atru.chr11.726 Acer truncatum HOM05D001678 ORTHO05D001698 7.2e-21 104.0 103 51.5
SGA_v2.0_scaffold27G11713 Striga asiatica HOM05D001678 ORTHO05D001698 3.5e-20 101.7 95 52.6
Glyma.01G021800 Glycine max HOM05D001678 ORTHO05D001698 4.6e-20 101.3 102 54.9
Oeu010520.1 Olea europaea HOM05D001678 ORTHO05D001698 1.0e-19 100.1 90 54.4
SGA_v2.0_scaffold612G53189 Striga asiatica HOM05D001678 ORTHO05D001698 1.0e-19 100.1 95 53.7
SGA_v2.0_scaffold27G11443 Striga asiatica HOM05D001678 ORTHO05D001698 3.9e-19 98.2 93 53.8
SGA_v2.0_scaffold68G22889 Striga asiatica HOM05D001678 ORTHO05D001698 3.9e-19 98.2 93 53.8
Prupe.8G061600 Prunus persica HOM05D001678 ORTHO05D001698 8.7e-19 97.1 102 45.1
Oeu027419.1 Olea europaea HOM05D000034 ORTHO05D000037 1.1e-18 96.7 102 52.0
Atru.chr7.11 Acer truncatum HOM05D000034 ORTHO05D000037 2.2e-17 92.4 103 48.5
Prupe.7G073100 Prunus persica HOM05D001678 ORTHO05D001698 2.2e-17 92.4 93 49.5
Atru.chr3.1295 Acer truncatum HOM05D001678 ORTHO05D001698 2.8e-17 92.0 93 50.5
TPR.G35604 Trifolium pratense HOM05D000295 ORTHO05D000188 3.7e-17 91.7 91 54.9
SGA_v2.0_scaffold3280G54305 Striga asiatica HOM05D001678 ORTHO05D001698 4.8e-17 91.3 103 46.6
RcHm_v2.0_Chr5g0052631 Rosa chinensis HOM05D001678 ORTHO05D001698 1.4e-16 89.7 96 44.8
SGA_v2.0_scaffold230G43377 Striga asiatica HOM05D001678 ORTHO05D001698 2.4e-16 89.0 95 49.5
Prupe.4G156100 Prunus persica HOM05D001678 ORTHO05D001698 6.9e-16 87.4 102 42.2
DCAR_028638 Daucus carota HOM05D001678 ORTHO05D001698 2.6e-15 85.5 90 48.9
Oeu039328.1 Olea europaea HOM05D001678 ORTHO05D001698 4.5e-15 84.7 93 46.2
Oeu051357.1 Olea europaea HOM05D001678 ORTHO05D001698 4.5e-15 84.7 93 46.2
FAN10G0526 Fragaria x ananassa HOM05D001678 ORTHO05D001698 5.9e-15 84.3 97 45.4
BolC9t53596H Brassica oleracea HOM05D001678 ORTHO05D001698 7.7e-15 84.0 100 47.0
Oeu061131.1 Olea europaea HOM05D001678 ORTHO05D001698 7.7e-15 84.0 102 48.0
FAN09G4289 Fragaria x ananassa HOM05D001678 ORTHO05D001698 1.0e-14 83.6 96 43.8
FAN08G2072 Fragaria x ananassa HOM05D001678 ORTHO05D001698 1.3e-14 83.2 95 43.2
Prupe.6G164800 Prunus persica HOM05D001678 ORTHO05D001698 3.8e-14 81.6 92 45.7
Oeu041480.1 Olea europaea HOM05D001678 ORTHO05D001698 8.5e-14 80.5 80 51.2
Oeu041525.1 Olea europaea HOM05D001678 ORTHO05D001698 2.5e-13 79.0 78 51.3
TPR.G1126 Trifolium pratense HOM05D000336 ORTHO05D002301 9.4e-13 77.0 65 63.1
BraA01t03239Z Brassica rapa HOM05D001678 ORTHO05D001698 1.6e-12 76.3 89 42.7
Prupe.1G229800 Prunus persica HOM05D001678 ORTHO05D001698 1.6e-12 76.3 74 54.1
Thhalv10023821m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 3.6e-12 75.1 96 40.6
Thhalv10029423m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 3.6e-12 75.1 96 39.6
PSO478G1052 Papaver somniferum HOM05D001678 ORTHO05D001698 3.6e-12 75.1 97 41.2
Prupe.2G168600 Prunus persica HOM05D001678 ORTHO05D001698 3.6e-12 75.1 103 43.7
RcHm_v2.0_Chr5g0019361 Rosa chinensis HOM05D001678 ORTHO05D001698 3.6e-12 75.1 77 51.9
CARHR004570 Cardamine hirsuta HOM05D001678 ORTHO05D001698 4.6e-12 74.7 81 45.7
SGA_v2.0_scaffold177G39408 Striga asiatica HOM05D001678 ORTHO05D001698 1.0e-11 73.6 81 48.1
Thhalv10029365m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 1.4e-11 73.2 87 40.2
C07p02260 Brassica napus HOM05D001678 ORTHO05D001698 1.8e-11 72.8 87 41.4
BolC7t40636H Brassica oleracea HOM05D001678 ORTHO05D001698 1.8e-11 72.8 87 41.4
FAN23G0320 Fragaria x ananassa HOM05D001678 ORTHO05D001698 1.8e-11 72.8 90 44.4
MD03G1206200 Malus domestica HOM05D001678 ORTHO05D001698 3.0e-11 72.0 102 40.2
C05p18830 Brassica napus HOM05D001678 ORTHO05D001698 3.9e-11 71.6 87 40.2
Carub.0002s1509 Capsella rubella HOM05D001678 ORTHO05D001698 3.9e-11 71.6 102 40.2
Carub.0007s0094 Capsella rubella HOM05D001678 ORTHO05D001698 3.9e-11 71.6 102 41.2
Carub.0007s2622 Capsella rubella HOM05D001678 ORTHO05D001698 3.9e-11 71.6 102 40.2
FAN03G1731 Fragaria x ananassa HOM05D001678 ORTHO05D001698 3.9e-11 71.6 109 37.6
BraA04t16704Z Brassica rapa HOM05D001678 ORTHO05D001698 5.1e-11 71.2 89 40.4
A09p37990 Brassica napus HOM05D001678 ORTHO05D001698 6.7e-11 70.9 89 39.3
BolC9t56511H Brassica oleracea HOM05D001678 ORTHO05D001698 6.7e-11 70.9 89 40.4
C07p02270 Brassica napus HOM05D001678 ORTHO05D001698 8.8e-11 70.5 89 39.3
BolC3t20376H Brassica oleracea HOM05D001678 ORTHO05D001698 8.8e-11 70.5 89 41.6
Carub.0002s1800 Capsella rubella HOM05D001678 ORTHO05D001698 8.8e-11 70.5 102 40.2
Thhalv10022272m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 8.8e-11 70.5 96 39.6
FvH4_2g00551 Fragaria vesca HOM05D001678 ORTHO05D001698 8.8e-11 70.5 102 43.1
AT2G29880 Arabidopsis thaliana HOM05D001678 ORTHO05D001698 1.1e-10 70.1 102 41.2
BolC3t21566H Brassica oleracea HOM05D001678 ORTHO05D001698 1.1e-10 70.1 89 40.4
FAN13G1605 Fragaria x ananassa HOM05D001678 ORTHO05D001698 1.1e-10 70.1 102 41.2
BcaB01g02681 Brassica carinata HOM05D001678 ORTHO05D001698 1.5e-10 69.7 103 40.8
BraA05t21006Z Brassica rapa HOM05D001678 ORTHO05D001698 1.5e-10 69.7 89 39.3
Carub.0006s3595 Capsella rubella HOM05D001678 ORTHO05D001698 1.5e-10 69.7 96 38.5
Carub.0008s1510 Capsella rubella HOM05D001678 ORTHO05D001698 1.5e-10 69.7 96 38.5
RcHm_v2.0_Chr4g0409291 Rosa chinensis HOM05D001678 ORTHO05D001698 1.5e-10 69.7 69 46.4
C05p38790 Brassica napus HOM05D001678 ORTHO05D001698 2.0e-10 69.3 87 39.1
BolC5t32619H Brassica oleracea HOM05D001678 ORTHO05D001698 2.0e-10 69.3 87 39.1
Thhalv10029159m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 2.0e-10 69.3 81 43.2
SGA_v2.0_scaffold2614G54162 Striga asiatica HOM05D001678 ORTHO05D001698 2.0e-10 69.3 64 54.7
AL1G65810 Arabidopsis lyrata HOM05D000034 ORTHO05D001698 2.5e-10 68.9 102 40.2
AL8G38260 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 2.5e-10 68.9 102 37.3
AT5G27260 Arabidopsis thaliana HOM05D001678 ORTHO05D001698 2.5e-10 68.9 96 35.4
SGA_v2.0_scaffold1090G53835 Striga asiatica HOM05D001678 ORTHO05D001698 2.5e-10 68.9 80 48.8
FAN26G0826 Fragaria x ananassa HOM05D001678 ORTHO05D001698 3.3e-10 68.6 84 44.0
RcHm_v2.0_Chr6g0281401 Rosa chinensis HOM05D001678 ORTHO05D001698 3.3e-10 68.6 69 46.4
C02p49350 Brassica napus HOM05D001678 ORTHO05D001698 4.3e-10 68.2 102 39.2
BolC2t11022H Brassica oleracea HOM05D001678 ORTHO05D001698 4.3e-10 68.2 102 39.2
RcHm_v2.0_Chr6g0297421 Rosa chinensis HOM05D001678 ORTHO05D001698 5.7e-10 67.8 69 46.4
BolC4t22829H Brassica oleracea HOM05D001678 ORTHO05D001698 7.4e-10 67.4 89 38.2
AL4G17900 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 9.7e-10 67.0 84 41.7
BolC7t40637H Brassica oleracea HOM05D001678 ORTHO05D001698 9.7e-10 67.0 89 38.2
FAN08G3647 Fragaria x ananassa HOM05D001678 ORTHO05D001698 9.7e-10 67.0 69 46.4
Sp6g02750 Schrenkiella parvula HOM05D001678 ORTHO05D001698 9.7e-10 67.0 102 40.2
BraA10t43304Z Brassica rapa HOM05D001678 ORTHO05D001698 1.3e-09 66.6 101 39.6
C06p21980 Brassica napus HOM05D001678 ORTHO05D001698 1.7e-09 66.2 103 35.9
FAN14G3339 Fragaria x ananassa HOM05D001678 ORTHO05D001698 1.7e-09 66.2 69 49.3
A03p43320 Brassica napus HOM05D001678 ORTHO05D001698 2.2e-09 65.9 101 39.6
BolC5t31169H Brassica oleracea HOM05D001678 ORTHO05D001698 2.8e-09 65.5 90 36.7
BolC6t36822H Brassica oleracea HOM05D001678 ORTHO05D001698 2.8e-09 65.5 90 36.7
BraA06t24995Z Brassica rapa HOM05D001678 ORTHO05D001698 4.8e-09 64.7 72 45.8
AL5G20810 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 6.3e-09 64.3 102 37.3
BraA06t25821Z Brassica rapa HOM05D001678 ORTHO05D001698 6.3e-09 64.3 102 36.3
Thhalv10029209m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 6.3e-09 64.3 91 39.6
FAN01G1612 Fragaria x ananassa HOM05D001678 ORTHO05D001698 6.3e-09 64.3 102 40.2
SalBow1G8270 Salvia bowleyana HOM05D001678 ORTHO05D001698 6.3e-09 64.3 82 40.2
BcaC07g37804 Brassica carinata HOM05D001678 ORTHO05D001698 8.2e-09 63.9 103 37.9
A01p29830 Brassica napus HOM05D001678 ORTHO05D001698 8.2e-09 63.9 103 37.9
C02p32520 Brassica napus HOM05D001678 ORTHO05D001698 8.2e-09 63.9 103 37.9
BolC8t48193H Brassica oleracea HOM05D001678 ORTHO05D001698 8.2e-09 63.9 103 37.9
BraA01t03111Z Brassica rapa HOM05D001678 ORTHO05D001698 8.2e-09 63.9 103 37.9
MD05G1104000 Malus domestica HOM05D001678 ORTHO05D001698 8.2e-09 63.9 102 36.3
Atru.chr4.878 Acer truncatum HOM05D001678 ORTHO05D001698 1.1e-08 63.5 71 47.9
AL4G17660 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 1.4e-08 63.2 73 45.2
C09p07340 Brassica napus HOM05D001678 ORTHO05D001698 1.4e-08 63.2 90 35.6
Lj1C275G4 Lonicera japonica HOM05D001678 ORTHO05D001698 1.4e-08 63.2 70 47.1
BolC2t09582H Brassica oleracea HOM05D001678 ORTHO05D001698 1.8e-08 62.8 99 37.4
C05p34590 Brassica napus HOM05D001678 ORTHO05D001698 2.4e-08 62.4 72 45.8
Thhalv10027019m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 2.4e-08 62.4 91 38.5
SalBow8G3237 Salvia bowleyana HOM05D001678 ORTHO05D001698 3.1e-08 62.0 63 49.2
Prupe.1G130600 Prunus persica HOM05D001678 ORTHO05D001698 4.1e-08 61.6 73 46.6
BolC5t32191H Brassica oleracea HOM05D001678 ORTHO05D001698 5.3e-08 61.2 72 44.4
BraA05t20441Z Brassica rapa HOM05D001678 ORTHO05D001698 5.3e-08 61.2 100 38.0
BolC2t09580H Brassica oleracea HOM05D001678 ORTHO05D001698 6.9e-08 60.8 99 36.4
PSO764G0063 Papaver somniferum HOM05D001678 ORTHO05D001698 1.2e-07 60.1 110 35.5
Oeu060645.1 Olea europaea HOM05D001678 ORTHO05D001698 1.5e-07 59.7 78 43.6
RcHm_v2.0_Chr3g0476481 Rosa chinensis HOM05D001678 ORTHO05D001698 1.5e-07 59.7 101 39.6
FAN23G1752 Fragaria x ananassa HOM05D001678 ORTHO05D001698 2.6e-07 58.9 102 36.3
SGA_v2.0_scaffold230G43378 Striga asiatica HOM05D001678 ORTHO05D001698 2.6e-07 58.9 95 37.9
Oeu004532.1 Olea europaea HOM05D001678 ORTHO05D001698 4.5e-07 58.2 65 47.7
BolC7t41455H Brassica oleracea HOM05D001678 ORTHO05D001698 5.9e-07 57.8 80 38.8
C02p58150 Brassica napus HOM05D001678 ORTHO05D001698 1.3e-06 56.6 88 39.8
PSO339G2111 Papaver somniferum HOM05D001678 ORTHO05D001698 1.3e-06 56.6 86 34.9
Atru.chr12.2214 Acer truncatum HOM05D001678 ORTHO05D001698 2.9e-06 55.5 68 45.6
Thhalv10015362m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 5.0e-06 54.7 101 36.6
FAN26G1256 Fragaria x ananassa HOM05D001678 ORTHO05D001698 5.0e-06 54.7 69 43.5
FvH4_5g24690 Fragaria vesca HOM05D001678 ORTHO05D001698 8.5e-06 53.9 61 41.0
FAN04G2958 Fragaria x ananassa HOM05D001678 ORTHO05D001698 8.5e-06 53.9 73 38.4


User provided reference genes

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