Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 1.1e-81 306.6 161 100.0
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 1.1e-39 167.2 217 50.2
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 5.8e-38 161.4 215 49.8
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 2.9e-37 159.1 281 43.8
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 1.1e-36 157.1 283 43.1
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 4.2e-36 155.2 198 50.0
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 7.1e-36 154.5 198 50.0
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.7e-35 152.5 191 49.7
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.3e-32 143.7 183 49.7
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.3e-32 143.7 183 49.7
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.3e-32 143.7 183 49.7
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.8e-32 142.5 183 49.7
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 3.8e-29 132.1 281 38.8
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 4.2e-28 128.6 110 66.4
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 5.5e-28 128.3 110 66.4
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 1.2e-27 127.1 110 65.5
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 1.6e-27 126.7 213 43.7
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 2.1e-27 126.3 225 40.9
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 3.6e-27 125.6 232 41.4
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 6.1e-27 124.8 218 41.7
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 7.9e-27 124.4 218 40.8
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 1.8e-26 123.2 101 66.3
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 2.3e-26 122.9 214 42.1
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 3.0e-26 122.5 221 39.4
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 3.9e-26 122.1 227 39.2
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 6.7e-26 121.3 214 41.6
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 1.9e-25 119.8 286 36.4
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 1.9e-25 119.8 218 40.4
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 3.3e-25 119.0 285 35.4
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 4.3e-25 118.6 219 40.2
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 5.7e-25 118.2 221 39.4
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 1.7e-24 116.7 234 40.2
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 2.8e-24 115.9 222 39.2
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.1e-23 114.0 225 39.1
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 1.1e-23 114.0 287 35.9
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 1.4e-23 113.6 214 38.8
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 1.8e-23 113.2 280 35.7
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 3.1e-23 112.5 285 35.8
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 4.1e-23 112.1 178 44.4
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 5.3e-23 111.7 254 39.4
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 5.3e-23 111.7 115 56.5
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 9.1e-23 110.9 244 37.7
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 9.1e-23 110.9 115 56.5
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 1.5e-22 110.2 217 40.1
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 2.6e-22 109.4 201 41.8
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 3.4e-22 109.0 222 37.4
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 3.4e-22 109.0 287 35.2
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 3.4e-22 109.0 156 48.1
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 1.0e-21 107.5 213 39.0
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 1.7e-21 106.7 225 37.8
Prupe.2G115400 Prunus persica HOM05D003921 ORTHO05D004394 2.9e-21 105.9 59 94.9
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 3.8e-21 105.5 109 56.0
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 5.0e-21 105.1 245 36.7
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 1.4e-20 103.6 223 37.7
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.4e-20 103.6 162 42.0
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 1.9e-20 103.2 221 38.9
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 3.2e-20 102.4 160 45.6
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 5.5e-20 101.7 222 39.6
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 5.5e-20 101.7 221 38.5
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 7.2e-20 101.3 224 36.6
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 7.2e-20 101.3 162 42.0
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 7.2e-20 101.3 213 37.6
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 9.4e-20 100.9 286 33.9
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 9.4e-20 100.9 104 52.9
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 9.4e-20 100.9 99 58.6
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 1.2e-19 100.5 223 36.8
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 1.2e-19 100.5 279 32.6
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 1.6e-19 100.1 107 54.2
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 1.6e-19 100.1 223 36.3
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 1.6e-19 100.1 235 38.3
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 1.6e-19 100.1 111 55.9
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 2.7e-19 99.4 111 55.9
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 3.6e-19 99.0 103 56.3
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 3.6e-19 99.0 217 37.3
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 3.6e-19 99.0 224 37.5
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 4.7e-19 98.6 280 34.3
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 4.7e-19 98.6 109 53.2
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 4.7e-19 98.6 227 38.3
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.0e-18 97.4 217 38.2
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 1.8e-18 96.7 205 34.1
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 2.3e-18 96.3 205 34.1
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 3.9e-18 95.5 289 32.5
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 6.7e-18 94.7 231 37.2
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 6.7e-18 94.7 200 38.0
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 8.8e-18 94.4 106 51.9
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 1.5e-17 93.6 217 36.4
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.6e-17 92.8 109 54.1
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 3.3e-17 92.4 120 53.3
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 3.3e-17 92.4 110 52.7
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 3.3e-17 92.4 110 52.7
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 4.4e-17 92.0 218 37.2
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 5.7e-17 91.7 217 33.6
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 5.7e-17 91.7 120 53.3
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 5.7e-17 91.7 102 53.9
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 7.4e-17 91.3 144 41.0
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 1.3e-16 90.5 108 54.6
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 3.7e-16 89.0 217 35.5
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 4.8e-16 88.6 242 36.4
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 4.8e-16 88.6 117 51.3
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 4.8e-16 88.6 202 36.6
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 6.3e-16 88.2 212 36.8
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 1.1e-15 87.4 242 36.0
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 1.1e-15 87.4 201 37.3
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 1.1e-15 87.4 205 38.0
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.4e-15 87.0 239 32.6
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 2.4e-15 86.3 204 37.7
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 2.4e-15 86.3 217 35.5
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 3.1e-15 85.9 221 36.2
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 5.3e-15 85.1 206 37.4
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 5.3e-15 85.1 262 36.6
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 6.9e-15 84.7 207 34.8
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 6.9e-15 84.7 111 50.5
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 9.1e-15 84.3 206 37.4
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 9.1e-15 84.3 239 36.0
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 1.2e-14 84.0 242 34.7
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 1.5e-14 83.6 151 39.1
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 3.4e-14 82.4 242 34.3
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 3.4e-14 82.4 242 35.5
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 3.4e-14 82.4 242 35.5
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 3.4e-14 82.4 150 44.0
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 5.9e-14 81.6 242 33.9
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 5.9e-14 81.6 242 33.9
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 5.9e-14 81.6 206 36.9
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 5.9e-14 81.6 242 33.9
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 7.7e-14 81.3 242 34.7
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 7.7e-14 81.3 213 33.3
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 1.0e-13 80.9 242 35.1
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.7e-13 80.1 92 53.3
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 3.8e-13 79.0 242 34.7
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 3.8e-13 79.0 82 61.0
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 5.0e-13 78.6 254 34.3
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 6.5e-13 78.2 100 49.0
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 6.5e-13 78.2 185 37.3
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 8.5e-13 77.8 103 48.5
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 1.1e-12 77.4 240 34.2
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 1.4e-12 77.0 110 47.3
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 1.4e-12 77.0 258 31.8
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 7.2e-12 74.7 230 31.7
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 2.3e-10 69.7 290 30.0
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 3.9e-10 68.9 109 44.0
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.0e-09 66.6 173 34.7
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 9.7e-09 64.3 278 27.0
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 3.7e-08 62.4 101 41.6
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 3.1e-07 59.3 217 30.9
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 5.3e-07 58.5 65 50.8
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 1.6e-06 57.0 117 39.3
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 1.6e-06 57.0 241 30.3
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 2.6e-06 56.2 56 57.1
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 5.9e-06 55.1 217 28.6
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 5.9e-06 55.1 215 29.8


User provided reference genes

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