Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G090100 Prunus persica HOM05D005759 ORTHO05D007172 9.3e-257 889.8 483 100.0
MD07G1072000 Malus domestica HOM05D005759 ORTHO05D007172 2.4e-188 662.5 568 63.9
MD02G1244900 Malus domestica HOM05D005759 ORTHO05D007172 8.6e-186 654.1 565 63.0
RcHm_v2.0_Chr1g0334181 Rosa chinensis HOM05D005759 ORTHO05D007172 5.8e-166 588.2 568 59.7
Duzib114G0077 Durio zibethinus HOM05D005759 ORTHO05D007172 3.0e-130 469.5 573 47.6
Cfa011218 Carpinus fangiana HOM05D005759 ORTHO05D007172 4.3e-129 465.7 566 48.1
Dinv31290 Davidia involucrata HOM05D005759 ORTHO05D007172 1.1e-127 461.1 573 47.3
CiPaw.13G035800 Carya illinoinensis HOM05D005759 ORTHO05D007172 6.5e-125 451.8 564 48.2
Haze_02624 Corylus avellana HOM05D005759 ORTHO05D007172 5.5e-124 448.7 598 45.5
Thecc.10G099000 Theobroma cacao HOM05D005759 ORTHO05D007172 9.4e-124 448.0 574 46.3
Gorai.011G232200 Gossypium raimondii HOM05D005759 ORTHO05D007172 6.1e-123 445.3 567 45.9
Gohir.D10G206700 Gossypium hirsutum HOM05D005759 ORTHO05D007172 2.3e-122 443.4 567 46.0
CSS0028406 Camellia sinensis var. sinensis HOM05D005759 ORTHO05D007172 8.8e-122 441.4 572 50.5
TAR623G0127 Trochodendron aralioides HOM05D005759 ORTHO05D007172 4.4e-121 439.1 573 46.4
QL04p040912 Quercus lobata HOM05D005759 ORTHO05D007172 1.8e-119 433.7 564 47.7
Actinidia34708 Actinidia chinensis HOM05D005759 ORTHO05D007172 9.1e-119 431.4 567 49.4
Potri.010G234000 Populus trichocarpa HOM05D005759 ORTHO05D007172 5.5e-116 422.2 566 46.8
COL.COLO4_35597 Corchorus olitorius HOM05D005759 ORTHO05D007172 2.1e-115 420.2 569 45.9
Hma1.2p1_0352F.1_g133040 Hydrangea macrophylla HOM05D005759 ORTHO05D007172 1.1e-113 414.5 578 46.0
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 2.2e-112 410.2 348 65.5
Manes.07G091866 Manihot esculenta HOM05D005759 ORTHO05D007172 1.0e-109 401.4 571 42.6
FAN03G0647 Fragaria x ananassa HOM05D005759 ORTHO05D007172 8.5e-109 398.3 338 65.1
FvH4_7g06330 Fragaria vesca HOM05D005759 ORTHO05D007172 7.2e-108 395.2 338 64.5
Sabra10G0181400 Salix brachista HOM05D005759 ORTHO05D007172 4.7e-107 392.5 587 43.6
Rhsim09G0144200 Rhododendron simsii HOM05D005759 ORTHO05D007172 1.4e-106 391.0 573 42.9
FAN06G0090 Fragaria x ananassa HOM05D005759 ORTHO05D007172 4.0e-106 389.4 348 63.2
vmacro10276 Vaccinium macrocarpon HOM05D005759 ORTHO05D007172 1.5e-105 387.5 551 43.9
MELO3C019880.2 Cucumis melo HOM05D005759 ORTHO05D007172 2.0e-105 387.1 571 42.2
ClCG08G008080 Citrullus lanatus HOM05D005759 ORTHO05D007172 2.2e-104 383.6 568 42.6
Actinidia31089 Actinidia chinensis HOM05D005759 ORTHO05D007172 2.8e-104 383.3 535 46.0
Sed0025588 Sechium edule HOM05D005759 ORTHO05D007172 1.3e-101 374.4 570 40.9
THA.LOC104826349 Tarenaya hassleriana HOM05D005759 ORTHO05D007172 1.1e-100 371.3 562 41.3
RhsimUnG0061600 Rhododendron simsii HOM05D005759 ORTHO05D007172 2.5e-100 370.2 614 40.1
Glyma.02G165400 Glycine max HOM05D005759 ORTHO05D007172 4.2e-100 369.4 566 45.2
Lalb_Chr03g0036351 Lupinus albus HOM05D005759 ORTHO05D007172 4.7e-99 365.9 562 42.2
Nn2g13981 Nelumbo nucifera HOM05D005759 ORTHO05D007172 1.8e-98 364.0 569 44.5
Phvul.007G245100 Phaseolus vulgaris HOM05D005759 ORTHO05D007172 1.2e-97 361.3 570 45.3
arahy.Tifrunner.gnm1.ann1.0Q505S Arachis hypogaea HOM05D005759 ORTHO05D007172 1.6e-94 350.9 563 44.4
Lj5g0004167 Lotus japonicus HOM05D005759 ORTHO05D007172 2.5e-92 343.6 522 40.4
TPR.G7613 Trifolium pratense HOM05D005759 ORTHO05D007172 6.1e-91 339.0 562 38.3
Medtr1g050730 Medicago truncatula HOM05D005759 ORTHO05D007172 2.6e-89 333.6 562 38.1
Ciclev10031564m.g Citrus clementina HOM05D005759 ORTHO05D007172 5.7e-89 332.4 350 56.0
VMungo0720G2821 Vigna mungo HOM05D005759 ORTHO05D007172 4.9e-88 329.3 522 39.8
Atru.chr12.959 Acer truncatum HOM05D005759 ORTHO05D007172 4.1e-87 326.2 331 57.1
AL4G23090 Arabidopsis lyrata HOM05D005759 ORTHO05D007172 2.7e-86 323.6 568 38.2
Psat6g094520 Pisum sativum HOM05D005759 ORTHO05D007172 4.5e-86 322.8 561 41.5
AT2G28600 Arabidopsis thaliana HOM05D005759 ORTHO05D007172 5.0e-85 319.3 566 38.9
CANSAT56G0546 Cannabis sativa HOM05D005759 ORTHO05D007172 1.5e-84 317.8 339 61.1
MBI17_g30596_MAGBIO Magnolia biondii HOM05D005759 ORTHO05D007172 1.5e-84 317.8 553 40.9
arahy.Tifrunner.gnm1.ann1.Y61W31 Arachis hypogaea HOM05D005759 ORTHO05D007172 8.9e-82 308.5 682 37.5
GSVIVG01034722001 Vitis vinifera HOM05D005759 ORTHO05D007172 5.8e-81 305.8 339 58.1
CsaV3_2G032950 Cucumis sativus L. HOM05D005759 ORTHO05D007172 1.3e-80 304.7 345 50.1
CARHR121620 Cardamine hirsuta HOM05D005759 ORTHO05D007172 1.7e-80 304.3 563 36.8
CDE04G0943 Ceratophyllum demersum HOM05D005759 ORTHO05D007172 2.9e-80 303.5 571 36.4
Thhalv10016555m.g Eutrema salsugineum HOM05D005759 ORTHO05D007172 2.9e-80 303.5 565 40.0
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 2.0e-78 297.4 543 37.2
TWI38G0593 Tripterygium wilfordii HOM05D005759 ORTHO05D007172 2.7e-78 297.0 346 51.7
Aqoxy1G00957 Aquilegia oxysepala HOM05D005759 ORTHO05D007172 1.7e-77 294.3 566 36.9
Carub.0004s0956 Capsella rubella HOM05D005759 ORTHO05D007172 1.7e-77 294.3 564 38.5
Sp4g11420 Schrenkiella parvula HOM05D005759 ORTHO05D007172 1.1e-76 291.6 539 37.7
BcaB04g16965 Brassica carinata HOM05D005759 ORTHO05D007172 3.6e-75 286.6 563 39.4
A08p00720 Brassica napus HOM05D005759 ORTHO05D007172 6.2e-75 285.8 564 35.8
BraA08t32129Z Brassica rapa HOM05D005759 ORTHO05D007172 6.2e-75 285.8 564 35.8
Oeu059850.1 Olea europaea HOM05D005759 ORTHO05D007172 1.8e-74 284.3 366 44.5
AUR62041532 Chenopodium quinoa HOM05D005759 ORTHO05D007172 8.9e-74 282.0 338 47.0
AUR62041544 Chenopodium quinoa HOM05D005759 ORTHO05D007172 1.5e-73 281.2 332 48.5
BolC3t21576H Brassica oleracea HOM05D005759 ORTHO05D007172 2.0e-73 280.8 563 40.3
PGR142G1839 Punica granatum HOM05D005759 ORTHO05D007172 5.8e-73 279.3 340 49.1
EL10Ac4g08636 Beta vulgaris HOM05D005759 ORTHO05D007172 9.8e-73 278.5 340 47.9
C03p92620 Brassica napus HOM05D005759 ORTHO05D007172 9.8e-73 278.5 563 40.0
BcaC01g01514 Brassica carinata HOM05D005759 ORTHO05D007172 2.2e-72 277.3 563 40.1
Sc06g0002190 Simmondsia chinensis HOM05D005759 ORTHO05D007172 6.4e-72 275.8 340 54.4
DCAR_030749 Daucus carota HOM05D005759 ORTHO05D007172 5.4e-71 272.7 339 46.3
Migut.F01660 Erythranthe guttata HOM05D005759 ORTHO05D007172 3.5e-70 270.0 306 49.7
Peaxi162Scf00244g00007 Petunia axillaris HOM05D005759 ORTHO05D007172 1.0e-69 268.5 338 45.6
Nitab4.5_0010486g0020 Nicotiana tabacum HOM05D005759 ORTHO05D007172 2.3e-69 267.3 334 43.7
MSTRG.409 Avicennia marina HOM05D005759 ORTHO05D007172 3.9e-69 266.5 304 50.0
Hund06749 Selenicereus undatus HOM05D005759 ORTHO05D007172 6.6e-69 265.8 348 45.7
Cc02_g10290 Coffea canephora HOM05D005759 ORTHO05D007172 4.3e-68 263.1 351 45.3
Nitab4.5_0002259g0090 Nicotiana tabacum HOM05D005759 ORTHO05D007172 5.6e-68 262.7 335 43.9
Ah.04g163640 Amaranthus hybridus HOM05D005759 ORTHO05D007172 2.3e-66 257.3 338 43.8
Lsat_1_v5_gn_2_102781 Lactuca sativa HOM05D005759 ORTHO05D007172 6.8e-66 255.8 470 36.8
Zm00001eb164020 Zea mays HOM05D005759 ORTHO05D007172 8.9e-66 255.4 575 32.3
PSO063G1818 Papaver somniferum HOM05D005759 ORTHO05D007172 1.5e-65 254.6 395 40.3
CAN.G135.64 Capsicum annuum HOM05D005759 ORTHO05D007172 3.4e-65 253.4 334 42.2
SalBow6G0601 Salvia bowleyana HOM05D005759 ORTHO05D007172 3.4e-65 253.4 355 44.5
ATR0820G119 Amborella trichopoda HOM05D005759 ORTHO05D007172 1.3e-64 251.5 577 34.1
Duzib128G1757 Durio zibethinus HOM05D005759 ORTHO05D007172 8.3e-64 248.8 193 62.7
PGSC0003DMG400027344 Solanum tuberosum HOM05D005759 ORTHO05D007172 1.1e-63 248.4 334 42.2
SGA_v2.0_scaffold13G06508 Striga asiatica HOM05D005759 ORTHO05D007172 1.4e-63 248.1 350 42.3
Solyc11g007610.2 Solanum lycopersicum HOM05D005759 ORTHO05D007172 4.6e-62 243.0 334 41.0
HanXRQChr14g0456321 Helianthus annuus HOM05D005759 ORTHO05D007172 6.0e-62 242.7 344 41.3
HanXRQChr16g0513241 Helianthus annuus HOM05D005759 ORTHO05D007172 1.0e-61 241.9 332 42.5
Nn6g35073 Nelumbo nucifera HOM05D005759 ORTHO05D007172 3.0e-61 240.4 527 36.1
Sopen11g003460 Solanum pennellii HOM05D005759 ORTHO05D007172 3.0e-61 240.4 334 40.4
Os12g0147500 Oryza sativa ssp. japonica HOM05D005759 ORTHO05D007172 1.9e-60 237.7 575 31.3
Cpa.g.sc720.1 Carica papaya HOM05D005759 ORTHO05D007172 8.1e-59 232.3 485 36.9
HPP92_024384 Vanilla planifolia HOM05D005759 ORTHO05D007172 4.4e-57 226.5 337 41.5
Eucgr.G02717 Eucalyptus grandis HOM05D005759 ORTHO05D007172 5.8e-57 226.1 280 45.4
unitig_736.g22320 Utricularia gibba HOM05D005759 ORTHO05D007172 1.7e-56 224.6 365 37.3
ECA238G2526 Erigeron canadensis HOM05D005759 ORTHO05D007172 4.9e-56 223.0 305 41.3
PSO339G3253 Papaver somniferum HOM05D005759 ORTHO05D007172 1.4e-55 221.5 338 41.4
Ca_06884_v3 Cicer arietinum L. HOM05D005759 ORTHO05D007172 9.3e-55 218.8 302 51.0
PSO384G4559 Papaver somniferum HOM05D005759 ORTHO05D007172 6.6e-53 212.6 338 39.1
CSS0000330 Camellia sinensis var. sinensis HOM05D005759 ORTHO05D007172 9.6e-52 208.8 235 51.5
Migut.F00917 Erythranthe guttata HOM05D005759 ORTHO05D007172 4.0e-50 203.4 299 44.1
SalBow4G3335 Salvia bowleyana HOM05D005759 ORTHO05D007172 7.1e-47 192.6 242 43.8
SGA_v2.0_scaffold62G21347 Striga asiatica HOM05D005759 ORTHO05D007172 1.6e-43 181.4 185 47.6
Atru.chr12.960 Acer truncatum HOM05D005759 ORTHO05D007172 1.4e-42 178.3 153 65.4
Ciclev10033771m.g Citrus clementina HOM05D005759 ORTHO05D007172 6.9e-42 176.0 148 61.5
CSS0040532 Camellia sinensis var. sinensis HOM05D005759 ORTHO05D007172 3.9e-37 160.2 149 55.7
unitig_899.g14480 Utricularia gibba HOM05D005759 ORTHO05D007172 6.7e-37 159.5 222 37.4
Zm00001eb086490 Zea mays HOM05D005759 ORTHO05D007172 1.5e-36 158.3 150 51.3
Mapoly0120s0020 Marchantia polymorpha HOM05D005759 ORTHO05D007172 3.5e-30 137.1 605 26.8
Pp3c1_25970 Physcomitrium patens HOM05D005759 ORTHO05D007172 1.4e-26 125.2 572 25.9
FAN01G1973 Fragaria x ananassa HOM05D005759 ORTHO05D007172 6.9e-26 122.9 332 33.7
AagrBONN_evm.TU.Sc2ySwM_228.2343 Anthoceros agrestis HOM05D005759 ORTHO05D007172 3.2e-23 114.0 593 24.1
Zm00001eb201540 Zea mays HOM05D005759 ORTHO05D007172 6.1e-22 109.8 92 54.3
Gorai.011G232400 Gossypium raimondii HOM05D005759 ORTHO05D007172 5.1e-21 106.7 84 61.9
SEGI_00328 Sequoiadendron giganteum HOM05D005759 ORTHO05D000001 6.7e-21 106.3 274 32.5
PSO170G6466 Papaver somniferum HOM05D005759 ORTHO05D007172 9.0e-18 95.9 265 32.1
Ca_11764_v3 Cicer arietinum L. HOM05D005759 ORTHO05D007172 2.6e-17 94.4 84 50.0
Peaxi162Scf00244g00111 Petunia axillaris HOM05D005759 ORTHO05D007172 3.8e-16 90.5 83 56.6
PSO339G2548 Papaver somniferum HOM05D005759 ORTHO05D007172 2.4e-10 71.2 226 29.6
SEGI_18985 Sequoiadendron giganteum HOM05D005759 ORTHO05D007172 2.2e-08 64.7 135 32.6
Rhsim07G0134700 Rhododendron simsii HOM05D000032 ORTHO05D007444 2.9e-08 64.3 246 24.4
CBR_g23342 Chara braunii HOM05D005759 ORTHO05D002561 5.0e-08 63.5 86 39.5
Migut.E01328 Erythranthe guttata HOM05D000032 ORTHO05D007444 5.0e-08 63.5 518 22.4
unitig_747.g21360 Utricularia gibba HOM05D000032 ORTHO05D007444 1.1e-07 62.4 340 22.1
MSTRG.1786 Avicennia marina HOM05D000032 ORTHO05D007444 3.2e-07 60.8 503 22.7
DCAR_008202 Daucus carota HOM05D000032 ORTHO05D007444 4.2e-07 60.5 353 22.4
Eucgr.G02716 Eucalyptus grandis HOM05D005759 ORTHO05D007172 7.2e-07 59.7 73 35.6
GSVIVG01011527001 Vitis vinifera HOM05D000032 ORTHO05D007444 1.6e-06 58.5 357 21.0
GSVIVG01034723001 Vitis vinifera HOM05D005759 ORTHO05D007172 1.6e-06 58.5 39 71.8
CDE05G2699 Ceratophyllum demersum HOM05D000032 ORTHO05D001837 2.1e-06 58.2 278 24.5
Hma1.2p1_0803F.1_g220720 Hydrangea macrophylla HOM05D000032 ORTHO05D007444 2.1e-06 58.2 355 20.8
Phvul.002G133300 Phaseolus vulgaris HOM05D000032 ORTHO05D007444 4.7e-06 57.0 138 32.6
Duzib068G1248 Durio zibethinus HOM05D000032 ORTHO05D007444 6.1e-06 56.6 355 22.5
Actinidia18142 Actinidia chinensis HOM05D000032 ORTHO05D007444 7.9e-06 56.2 353 21.8


User provided reference genes

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