Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 7.7e-46 186.8 95 100.0
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 9.4e-44 179.9 94 94.7
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 3.0e-42 174.9 90 96.7
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 3.9e-42 174.5 94 89.4
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 3.9e-42 174.5 90 93.3
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 6.7e-42 173.7 90 94.4
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 8.8e-42 173.3 90 93.3
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 8.8e-42 173.3 90 93.3
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 8.8e-42 173.3 90 93.3
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.1e-41 172.9 90 93.3
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 1.1e-41 172.9 92 92.4
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 1.1e-41 172.9 90 95.6
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 1.5e-41 172.6 90 93.3
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 1.5e-41 172.6 90 94.4
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.5e-41 172.6 90 94.4
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.5e-41 172.6 90 94.4
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.5e-41 172.6 90 94.4
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 1.5e-41 172.6 90 94.4
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 2.0e-41 172.2 90 93.3
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 2.0e-41 172.2 90 93.3
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 2.0e-41 172.2 90 93.3
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 2.0e-41 172.2 90 93.3
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 2.0e-41 172.2 90 93.3
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 2.0e-41 172.2 90 92.2
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 2.0e-41 172.2 90 92.2
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 2.0e-41 172.2 90 92.2
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 2.6e-41 171.8 90 92.2
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 2.6e-41 171.8 90 92.2
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 2.6e-41 171.8 92 91.3
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 2.6e-41 171.8 90 92.2
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 3.3e-41 171.4 90 93.3
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 3.3e-41 171.4 90 91.1
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 3.3e-41 171.4 90 92.2
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 3.3e-41 171.4 90 92.2
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 4.4e-41 171.0 90 92.2
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 4.4e-41 171.0 90 92.2
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 4.4e-41 171.0 90 92.2
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 5.7e-41 170.6 90 93.3
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 5.7e-41 170.6 90 93.3
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 5.7e-41 170.6 90 92.2
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 5.7e-41 170.6 94 89.4
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 7.4e-41 170.2 90 91.1
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 7.4e-41 170.2 90 92.2
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 9.7e-41 169.9 90 90.0
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 9.7e-41 169.9 90 91.1
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 9.7e-41 169.9 90 91.1
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 1.3e-40 169.5 90 92.2
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 1.3e-40 169.5 89 94.4
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 1.3e-40 169.5 89 94.4
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 1.3e-40 169.5 90 91.1
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 1.3e-40 169.5 90 91.1
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 1.3e-40 169.5 90 90.0
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 1.3e-40 169.5 90 90.0
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 1.3e-40 169.5 89 93.3
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 1.3e-40 169.5 89 93.3
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 1.3e-40 169.5 90 91.1
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 1.7e-40 169.1 90 90.0
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 1.7e-40 169.1 90 91.1
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 1.7e-40 169.1 90 92.2
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 2.2e-40 168.7 90 91.1
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 2.2e-40 168.7 90 91.1
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 2.8e-40 168.3 90 90.0
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 3.7e-40 167.9 90 88.9
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 3.7e-40 167.9 90 90.0
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 3.7e-40 167.9 90 91.1
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 4.8e-40 167.5 90 88.9
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 8.2e-40 166.8 90 88.9
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 8.2e-40 166.8 90 88.9
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.4e-39 166.0 90 88.9
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 1.4e-39 166.0 90 88.9
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 2.4e-39 165.2 90 91.1
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 2.4e-39 165.2 90 87.8
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 3.1e-39 164.9 90 88.9
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.1e-39 164.9 89 88.8
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.1e-39 164.9 89 88.8
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 4.1e-39 164.5 89 91.0
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 5.3e-39 164.1 92 85.9
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 6.9e-39 163.7 90 88.9
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 9.1e-39 163.3 90 88.9
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 9.1e-39 163.3 90 88.9
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 9.1e-39 163.3 90 88.9
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 1.2e-38 162.9 90 87.8
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 1.2e-38 162.9 90 87.8
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 1.5e-38 162.5 91 85.7
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 1.5e-38 162.5 89 88.8
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 1.5e-38 162.5 90 86.7
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 1.5e-38 162.5 90 86.7
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 2.6e-38 161.8 90 86.7
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 2.6e-38 161.8 90 86.7
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 2.6e-38 161.8 90 85.6
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 3.4e-38 161.4 90 85.6
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 3.4e-38 161.4 90 85.6
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 3.4e-38 161.4 90 85.6
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 3.4e-38 161.4 90 88.9
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 4.5e-38 161.0 101 85.1
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 5.9e-38 160.6 101 85.1
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 7.7e-38 160.2 90 87.8
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 7.7e-38 160.2 90 86.7
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.7e-38 160.2 107 78.5
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.0e-37 159.8 107 78.5
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.0e-37 159.8 107 78.5
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 1.0e-37 159.8 90 85.6
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 1.7e-37 159.1 90 83.3
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 2.2e-37 158.7 103 78.6
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 2.2e-37 158.7 83 94.0
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 2.2e-37 158.7 86 89.5
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 2.2e-37 158.7 86 89.5
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 2.9e-37 158.3 107 75.7
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 5.0e-37 157.5 90 84.4
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 8.5e-37 156.8 90 82.2
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 1.1e-36 156.4 90 83.3
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.4e-36 156.0 90 83.3
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.4e-36 156.0 90 83.3
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 1.4e-36 156.0 90 83.3
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.2e-36 154.8 90 82.2
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.2e-36 154.8 90 82.2
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.2e-36 154.8 90 82.2
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 3.2e-36 154.8 90 83.3
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 3.2e-36 154.8 90 81.1
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 3.2e-36 154.8 90 83.3
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 3.2e-36 154.8 90 83.3
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 3.2e-36 154.8 113 73.5
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 4.2e-36 154.5 90 82.2
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.2e-36 154.5 90 82.2
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 5.5e-36 154.1 90 81.1
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 9.4e-36 153.3 90 82.2
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 1.2e-35 152.9 91 83.5
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 1.2e-35 152.9 90 82.2
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 1.6e-35 152.5 90 81.1
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 2.1e-35 152.1 79 92.4
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 2.7e-35 151.8 90 81.1
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 2.7e-35 151.8 92 79.3
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 2.7e-35 151.8 90 81.1
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 3.6e-35 151.4 89 78.7
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 4.7e-35 151.0 81 86.4
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 6.1e-35 150.6 90 76.7
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 1.0e-34 149.8 90 78.9
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.0e-34 149.8 95 78.9
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 2.3e-34 148.7 79 88.6
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 2.3e-34 148.7 90 75.6
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.5e-33 146.0 89 77.5
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.3e-32 142.9 89 76.4
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 1.2e-30 136.3 143 53.1
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 2.9e-29 131.7 89 70.8
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 1.2e-27 126.3 69 89.9
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.3e-26 122.1 63 98.4
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 1.5e-25 119.4 90 71.1
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.0e-22 109.0 69 73.9
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.7e-22 108.6 68 75.0
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 4.5e-22 107.8 66 75.8
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 5.9e-22 107.5 58 91.4
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 1.5e-20 102.8 88 62.5
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 8.0e-19 97.1 64 73.4
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.0e-18 95.1 60 75.0
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 7.0e-15 84.0 45 82.2
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.1e-12 76.6 52 71.2
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 4.7e-11 71.2 89 46.1
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 1.8e-10 69.3 85 44.7
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 1.8e-10 69.3 87 43.7
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 1.2e-09 66.6 35 91.4
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 1.2e-09 66.6 35 91.4
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 6.3e-08 60.8 98 42.9


User provided reference genes

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