Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G076400 Prunus persica HOM05D004324 ORTHO05D004840 2.6e-42 174.9 83 100.0
Lj7A531T56 Lonicera japonica HOM05D004324 ORTHO05D004840 3.7e-12 74.7 54 70.4
MSTRG.17174 Avicennia marina HOM05D004324 ORTHO05D004840 4.8e-12 74.3 53 71.7
Hma1.2p1_0375F.1_g138670 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 4.8e-12 74.3 53 71.7
Hma1.2p1_0442F.1_g153860 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 4.8e-12 74.3 53 71.7
Lalb_Chr12g0208141 Lupinus albus HOM05D004324 ORTHO05D004840 4.8e-12 74.3 53 71.7
MD02G1206600 Malus domestica HOM05D004324 ORTHO05D004840 4.8e-12 74.3 54 70.4
Peaxi162Scf00013g03018 Petunia axillaris HOM05D004324 ORTHO05D004840 4.8e-12 74.3 53 69.8
CAN.G388.33 Capsicum annuum HOM05D004324 ORTHO05D004840 6.3e-12 73.9 53 69.8
COL.COLO4_24608 Corchorus olitorius HOM05D004324 ORTHO05D004840 6.3e-12 73.9 53 69.8
Eucgr.E01445 Eucalyptus grandis HOM05D004324 ORTHO05D004840 6.3e-12 73.9 53 71.7
Nitab4.5_0000457g0100 Nicotiana tabacum HOM05D004324 ORTHO05D004840 6.3e-12 73.9 53 69.8
Nitab4.5_0010616g0050 Nicotiana tabacum HOM05D004324 ORTHO05D004840 6.3e-12 73.9 53 69.8
CSS0015452 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 8.3e-12 73.6 54 68.5
CSS0042374 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 8.3e-12 73.6 54 68.5
Prupe.2G142300 Prunus persica HOM05D004324 ORTHO05D004840 8.3e-12 73.6 54 70.4
COL.COLO4_24610 Corchorus olitorius HOM05D004324 ORTHO05D004840 1.1e-11 73.2 54 68.5
HanXRQChr16g0519961 Helianthus annuus HOM05D004324 ORTHO05D004840 1.1e-11 73.2 53 71.7
Thecc.08G173700 Theobroma cacao HOM05D004324 ORTHO05D004840 1.1e-11 73.2 53 69.8
CSS0002473 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 1.4e-11 72.8 54 68.5
Cc02_g24110 Coffea canephora HOM05D004324 ORTHO05D004840 1.4e-11 72.8 53 69.8
DCAR_008551 Daucus carota HOM05D004324 ORTHO05D004840 1.4e-11 72.8 53 69.8
Duzib268G1605 Durio zibethinus HOM05D004324 ORTHO05D004840 1.4e-11 72.8 53 69.8
MBI04_g35670_MAGBIO Magnolia biondii HOM05D004324 ORTHO05D004840 1.4e-11 72.8 53 69.8
Nn1g01122 Nelumbo nucifera HOM05D004324 ORTHO05D004840 1.4e-11 72.8 53 69.8
Os04g0106300 Oryza sativa ssp. japonica HOM05D004324 ORTHO05D004840 1.4e-11 72.8 53 71.7
SHI13535 Sapria himalayana HOM05D004324 ORTHO05D004840 1.4e-11 72.8 53 69.8
Thecc.08G173500 Theobroma cacao HOM05D004324 ORTHO05D004840 1.4e-11 72.8 53 69.8
TWI59G0845 Tripterygium wilfordii HOM05D004324 ORTHO05D004840 1.4e-11 72.8 54 66.7
TAR375G0703 Trochodendron aralioides HOM05D004324 ORTHO05D004840 1.4e-11 72.8 53 69.8
Atru.chr5.284 Acer truncatum HOM05D004324 ORTHO05D004840 1.8e-11 72.4 53 69.8
CiPaw.01G263900 Carya illinoinensis HOM05D004324 ORTHO05D004840 1.8e-11 72.4 53 67.9
CDE04G0300 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 1.8e-11 72.4 53 67.9
PSO782G5694 Papaver somniferum HOM05D004324 ORTHO05D004840 1.8e-11 72.4 54 68.5
Sc26g0001250 Simmondsia chinensis HOM05D004324 ORTHO05D004840 1.8e-11 72.4 53 67.9
Solyc01g091170.3 Solanum lycopersicum HOM05D004324 ORTHO05D004840 1.8e-11 72.4 53 69.8
Sopen01g036920 Solanum pennellii HOM05D004324 ORTHO05D004840 1.8e-11 72.4 53 69.8
Aqoxy7G00682 Aquilegia oxysepala HOM05D004324 ORTHO05D004840 2.4e-11 72.0 53 69.8
AL6G41660 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 2.4e-11 72.0 53 69.8
AT4G08900 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 2.4e-11 72.0 53 69.8
Carub.0006s2738 Capsella rubella HOM05D004324 ORTHO05D004840 2.4e-11 72.0 53 69.8
Thhalv10028793m.g Eutrema salsugineum HOM05D004324 ORTHO05D004840 2.4e-11 72.0 53 69.8
Glyma.03G028000 Glycine max HOM05D004324 ORTHO05D004840 2.4e-11 72.0 53 66.0
Gohir.D05G254400 Gossypium hirsutum HOM05D004324 ORTHO05D004840 2.4e-11 72.0 53 69.8
Gorai.009G265900 Gossypium raimondii HOM05D004324 ORTHO05D004840 2.4e-11 72.0 53 69.8
MD07G1119200 Malus domestica HOM05D004324 ORTHO05D004840 2.4e-11 72.0 54 68.5
Manes.05G047100 Manihot esculenta HOM05D004324 ORTHO05D004840 2.4e-11 72.0 53 69.8
Potri.002G146200 Populus trichocarpa HOM05D004324 ORTHO05D004840 2.4e-11 72.0 53 69.8
Rhsim07G0029000 Rhododendron simsii HOM05D004324 ORTHO05D004840 2.4e-11 72.0 54 66.7
Sc26g0001240 Simmondsia chinensis HOM05D004324 ORTHO05D004840 2.4e-11 72.0 53 66.0
Solyc01g091160.4 Solanum lycopersicum HOM05D004324 ORTHO05D004840 2.4e-11 72.0 53 67.9
Sopen01g036910 Solanum pennellii HOM05D004324 ORTHO05D004840 2.4e-11 72.0 53 67.9
SGA_v2.0_scaffold153G36989 Striga asiatica HOM05D004324 ORTHO05D004840 2.4e-11 72.0 54 66.7
THA.LOC104826515 Tarenaya hassleriana HOM05D004324 ORTHO05D004840 2.4e-11 72.0 53 69.8
vmacro13417 Vaccinium macrocarpon HOM05D004324 ORTHO05D004840 2.4e-11 72.0 54 66.7
GSVIVG01027662001 Vitis vinifera HOM05D004324 ORTHO05D004840 2.4e-11 72.0 53 67.9
BcaB01g02843 Brassica carinata HOM05D004324 ORTHO05D004840 3.1e-11 71.6 53 67.9
BcaC01g04748 Brassica carinata HOM05D004324 ORTHO05D004840 3.1e-11 71.6 53 67.9
A03p28290 Brassica napus HOM05D004324 ORTHO05D004840 3.1e-11 71.6 53 67.9
C03p34220 Brassica napus HOM05D004324 ORTHO05D004840 3.1e-11 71.6 53 67.9
BolC3t15731H Brassica oleracea HOM05D004324 ORTHO05D004840 3.1e-11 71.6 53 67.9
BraA03t12035Z Brassica rapa HOM05D004324 ORTHO05D004840 3.1e-11 71.6 53 67.9
Cpa.g.sc145.18 Carica papaya HOM05D004324 ORTHO05D004840 3.1e-11 71.6 53 69.8
AUR62004190 Chenopodium quinoa HOM05D004324 ORTHO05D004840 3.1e-11 71.6 53 66.0
Dinv32365 Davidia involucrata HOM05D004324 ORTHO05D004840 3.1e-11 71.6 53 69.8
Migut.B01616 Erythranthe guttata HOM05D004324 ORTHO05D004840 3.1e-11 71.6 54 66.7
FvH4_7g11450 Fragaria vesca HOM05D004324 ORTHO05D004840 3.1e-11 71.6 52 71.2
FAN01G0081 Fragaria x ananassa HOM05D004324 ORTHO05D004840 3.1e-11 71.6 52 71.2
FAN03G2758 Fragaria x ananassa HOM05D004324 ORTHO05D004840 3.1e-11 71.6 52 71.2
FAN06G1729 Fragaria x ananassa HOM05D004324 ORTHO05D004840 3.1e-11 71.6 52 71.2
FAN06G4220 Fragaria x ananassa HOM05D004324 ORTHO05D004840 3.1e-11 71.6 52 71.2
Manes.01G267300 Manihot esculenta HOM05D004324 ORTHO05D004840 3.1e-11 71.6 54 68.5
QL08p052832 Quercus lobata HOM05D004324 ORTHO05D004840 3.1e-11 71.6 52 71.2
RcHm_v2.0_Chr1g0349751 Rosa chinensis HOM05D004324 ORTHO05D004840 3.1e-11 71.6 52 71.2
RcHm_v2.0_Chr1g0349771 Rosa chinensis HOM05D004324 ORTHO05D004840 3.1e-11 71.6 52 71.2
Sp6g08900 Schrenkiella parvula HOM05D004324 ORTHO05D004840 3.1e-11 71.6 53 67.9
Aa31LG9G14610 Aethionema arabicum HOM05D004324 ORTHO05D004840 4.1e-11 71.2 53 66.0
AUR62013655 Chenopodium quinoa HOM05D004324 ORTHO05D004840 4.1e-11 71.2 53 64.2
Oeu055504.4 Olea europaea HOM05D004324 ORTHO05D004840 4.1e-11 71.2 53 69.8
PGR042G0702 Punica granatum HOM05D004324 ORTHO05D004840 4.1e-11 71.2 53 69.8
Sed0023731 Sechium edule HOM05D004324 ORTHO05D004840 4.1e-11 71.2 53 67.9
Zm00001eb418690 Zea mays HOM05D004324 ORTHO05D004840 4.1e-11 71.2 53 69.8
Atru.chr5.282 Acer truncatum HOM05D004324 ORTHO05D004840 5.4e-11 70.9 53 67.9
arahy.Tifrunner.gnm1.ann1.2VF8XD Arachis hypogaea HOM05D004324 ORTHO05D004840 5.4e-11 70.9 52 71.2
arahy.Tifrunner.gnm1.ann1.J6F3FE Arachis hypogaea HOM05D004324 ORTHO05D004840 5.4e-11 70.9 52 71.2
Carub.0006s2736 Capsella rubella HOM05D004324 ORTHO05D004840 5.4e-11 70.9 54 66.7
CARHR259850 Cardamine hirsuta HOM05D004324 ORTHO05D004840 5.4e-11 70.9 53 67.9
ECA234G2725 Erigeron canadensis HOM05D004324 ORTHO05D004840 5.4e-11 70.9 52 71.2
Lsat_1_v5_gn_4_43080 Lactuca sativa HOM05D004324 ORTHO05D004840 5.4e-11 70.9 52 71.2
Lj3g0008609 Lotus japonicus HOM05D004324 ORTHO05D004840 5.4e-11 70.9 53 67.9
Medtr4g024940 Medicago truncatula HOM05D004324 ORTHO05D004840 5.4e-11 70.9 53 66.0
Actinidia12245 Actinidia chinensis HOM05D004324 ORTHO05D004840 7.0e-11 70.5 52 69.2
AL6G42680 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 7.0e-11 70.5 53 67.9
AT4G08870 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 7.0e-11 70.5 53 67.9
Ciclev10021006m.g Citrus clementina HOM05D004324 ORTHO05D004840 7.0e-11 70.5 53 66.0
Haze_16793 Corylus avellana HOM05D004324 ORTHO05D004840 7.0e-11 70.5 53 66.0
Lj3g0015076 Lotus japonicus HOM05D004324 ORTHO05D004840 7.0e-11 70.5 53 66.0
Phvul.010G081600 Phaseolus vulgaris HOM05D004324 ORTHO05D004840 7.0e-11 70.5 53 66.0
Ah.05g174550 Amaranthus hybridus HOM05D004324 ORTHO05D004840 9.1e-11 70.1 53 62.3
EL10Ac1g00868 Beta vulgaris HOM05D004324 ORTHO05D004840 9.1e-11 70.1 53 66.0
CANSAT56G0022 Cannabis sativa HOM05D004324 ORTHO05D004840 9.1e-11 70.1 52 69.2
Potri.014G067700 Populus trichocarpa HOM05D004324 ORTHO05D004840 9.1e-11 70.1 53 67.9
ATR0665G432 Amborella trichopoda HOM05D004324 ORTHO05D004840 1.2e-10 69.7 52 67.3
CiPaw.02G169300 Carya illinoinensis HOM05D004324 ORTHO05D004840 1.2e-10 69.7 53 67.9
HanXRQChr16g0519941 Helianthus annuus HOM05D004324 ORTHO05D004840 1.2e-10 69.7 53 67.9
Lj3g0002034 Lotus japonicus HOM05D004324 ORTHO05D004840 1.2e-10 69.7 53 62.3
PSO478G0881 Papaver somniferum HOM05D004324 ORTHO05D004840 1.2e-10 69.7 54 66.7
SalBow5G2819 Salvia bowleyana HOM05D004324 ORTHO05D004840 1.2e-10 69.7 53 66.0
Hund27368 Selenicereus undatus HOM05D004324 ORTHO05D004840 1.2e-10 69.7 53 64.2
Sc26g0001270 Simmondsia chinensis HOM05D004324 ORTHO05D004840 1.2e-10 69.7 61 60.7
unitig_899.g15094 Utricularia gibba HOM05D004324 ORTHO05D004840 1.2e-10 69.7 53 67.9
Duzib177G0253 Durio zibethinus HOM05D004324 ORTHO05D004840 1.6e-10 69.3 53 66.0
Lj3g0012371 Lotus japonicus HOM05D004324 ORTHO05D004840 1.6e-10 69.3 53 66.0
HPP92_007375 Vanilla planifolia HOM05D004324 ORTHO05D004840 1.6e-10 69.3 53 64.2
Sed0016777 Sechium edule HOM05D004324 ORTHO05D004840 2.0e-10 68.9 53 67.9
Medtr4g024960 Medicago truncatula HOM05D004324 ORTHO05D004840 2.7e-10 68.6 53 67.9
TPR.G7599 Trifolium pratense HOM05D004324 ORTHO05D004840 2.7e-10 68.6 53 64.2
ClCG06G000480 Citrullus lanatus HOM05D004324 ORTHO05D004840 3.5e-10 68.2 53 67.9
CsaV3_6G006290 Cucumis sativus L. HOM05D004324 ORTHO05D004840 3.5e-10 68.2 53 67.9
TPR.G7597 Trifolium pratense HOM05D004324 ORTHO05D004840 3.5e-10 68.2 53 67.9
AagrBONN_evm.TU.Sc2ySwM_368.1743 Anthoceros agrestis HOM05D004324 ORTHO05D004840 4.5e-10 67.8 52 67.3
Ca_19938_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 4.5e-10 67.8 52 65.4
MELO3C022492.2 Cucumis melo HOM05D004324 ORTHO05D004840 4.5e-10 67.8 53 66.0
Glyma.01G140200 Glycine max HOM05D004324 ORTHO05D004840 4.5e-10 67.8 53 64.2
Psat0s3070g0160 Pisum sativum HOM05D004324 ORTHO05D004840 4.5e-10 67.8 52 65.4
SEGI_04392 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 4.5e-10 67.8 52 67.3
SEGI_09298 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 4.5e-10 67.8 52 67.3
Glyma.17G131300 Glycine max HOM05D004324 ORTHO05D004840 5.9e-10 67.4 53 64.2
Psat6g218040 Pisum sativum HOM05D004324 ORTHO05D004840 7.7e-10 67.0 54 59.3
Psat6g218080 Pisum sativum HOM05D004324 ORTHO05D004840 7.7e-10 67.0 54 59.3
Mapoly0082s0038 Marchantia polymorpha HOM05D004324 ORTHO05D004840 2.2e-09 65.5 52 67.3
CBR_g50887 Chara braunii HOM05D004324 ORTHO05D004840 2.9e-09 65.1 52 63.5
SGA_v2.0_scaffold11G05569 Striga asiatica HOM05D004324 ORTHO05D004840 3.8e-09 64.7 52 63.5
SMO367G0287 Selaginella moellendorffii HOM05D004324 ORTHO05D004840 6.5e-09 63.9 52 61.5
Pp3c5_2190 Physcomitrium patens HOM05D004324 ORTHO05D004840 1.5e-08 62.8 52 63.5
Psat7g231720 Pisum sativum HOM05D004324 ORTHO05D004840 1.5e-08 62.8 52 57.7
Gohir.A05G252532 Gossypium hirsutum HOM05D004324 ORTHO05D004840 3.2e-08 61.6 32 90.6
arahy.Tifrunner.gnm1.ann1.J17N2W Arachis hypogaea HOM05D004324 ORTHO05D004840 1.4e-06 56.2 31 87.1


User provided reference genes

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