Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G067900 Prunus persica HOM05D000929 ORTHO05D000157 4.9e-123 444.5 228 100.0
Prupe.1G474100 Prunus persica HOM05D000013 ORTHO05D019452 1.7e-35 153.7 82 97.6
Prupe.2G056200 Prunus persica HOM05D000929 ORTHO05D004813 8.6e-35 151.4 76 100.0
Prupe.2G018400 Prunus persica HOM05D000929 ORTHO05D004813 7.2e-34 148.3 76 98.7
MD07G1052000 Malus domestica HOM05D000929 ORTHO05D004813 2.0e-31 140.2 76 90.8
MD02G1267100 Malus domestica HOM05D000929 ORTHO05D004813 3.4e-31 139.4 76 89.5
Prupe.2G068200 Prunus persica HOM05D000929 ORTHO05D004813 5.7e-31 138.7 75 94.7
Prupe.6G199900 Prunus persica HOM05D000011 ORTHO05D022863 4.1e-29 132.5 81 87.7
Gohir.A08G148700 Gossypium hirsutum HOM05D000929 ORTHO05D004813 7.0e-29 131.7 76 82.9
FAN13G0018 Fragaria x ananassa HOM05D000929 ORTHO05D004813 1.6e-28 130.6 76 84.2
Dinv41800 Davidia involucrata HOM05D000929 ORTHO05D004813 2.0e-28 130.2 76 82.9
Nn1g08153 Nelumbo nucifera HOM05D000929 ORTHO05D004813 2.0e-28 130.2 76 82.9
FAN08G3498 Fragaria x ananassa HOM05D000929 ORTHO05D004813 5.9e-28 128.6 76 82.9
Thecc.03G320400 Theobroma cacao HOM05D000929 ORTHO05D004813 5.9e-28 128.6 76 81.6
FvH4_5g25110 Fragaria vesca HOM05D000929 ORTHO05D004813 7.8e-28 128.3 76 81.6
Gorai.004G177000 Gossypium raimondii HOM05D000929 ORTHO05D004813 1.0e-27 127.9 76 80.3
RcHm_v2.0_Chr7g0215311 Rosa chinensis HOM05D000929 ORTHO05D004813 1.0e-27 127.9 76 81.6
FAN04G0569 Fragaria x ananassa HOM05D000929 ORTHO05D004813 1.7e-27 127.1 76 81.6
FAN18G2918 Fragaria x ananassa HOM05D000929 ORTHO05D004813 1.7e-27 127.1 76 80.3
COL.COLO4_16747 Corchorus olitorius HOM05D000929 ORTHO05D004813 2.3e-27 126.7 76 82.9
Gohir.A12G201100 Gossypium hirsutum HOM05D000929 ORTHO05D004813 2.3e-27 126.7 76 80.3
Gohir.D08G169800 Gossypium hirsutum HOM05D000929 ORTHO05D004813 2.3e-27 126.7 76 78.9
Ciclev10010995m.g Citrus clementina HOM05D000929 ORTHO05D004813 2.9e-27 126.3 76 81.6
Actinidia01247 Actinidia chinensis HOM05D000929 ORTHO05D004813 6.6e-27 125.2 76 81.6
Duzib205G0211 Durio zibethinus HOM05D000929 ORTHO05D004813 6.6e-27 125.2 76 78.9
Haze_08424 Corylus avellana HOM05D000929 ORTHO05D004813 8.6e-27 124.8 76 84.2
TAR636G3540 Trochodendron aralioides HOM05D000929 ORTHO05D004813 8.6e-27 124.8 76 77.6
Gohir.D12G203900 Gossypium hirsutum HOM05D000929 ORTHO05D004813 1.1e-26 124.4 76 78.9
Gorai.008G218700 Gossypium raimondii HOM05D000929 ORTHO05D004813 1.1e-26 124.4 76 78.9
Potri.004G235200 Populus trichocarpa HOM05D000929 ORTHO05D004813 1.5e-26 124.0 76 80.3
Cfa012306 Carpinus fangiana HOM05D000929 ORTHO05D004813 1.9e-26 123.6 76 84.2
GSVIVG01036887001 Vitis vinifera HOM05D000929 ORTHO05D004813 2.5e-26 123.2 76 76.3
Actinidia32793 Actinidia chinensis HOM05D000929 ORTHO05D004813 4.3e-26 122.5 76 80.3
vmacro00098 Vaccinium macrocarpon HOM05D000929 ORTHO05D004813 9.5e-26 121.3 76 78.9
Duzib068G0752 Durio zibethinus HOM05D000929 ORTHO05D004813 1.6e-25 120.6 76 75.0
Eucgr.E01151 Eucalyptus grandis HOM05D000929 ORTHO05D004813 1.6e-25 120.6 76 76.3
Prupe.2G055800 Prunus persica HOM05D000929 ORTHO05D004813 1.6e-25 120.6 60 96.7
Peaxi162Scf00053g00316 Petunia axillaris HOM05D000929 ORTHO05D004813 2.8e-25 119.8 76 75.0
QL12p003602 Quercus lobata HOM05D000929 ORTHO05D004813 2.8e-25 119.8 76 78.9
Sabra01G0179900 Salix brachista HOM05D000929 ORTHO05D004813 2.8e-25 119.8 76 77.6
TWI60G0350 Tripterygium wilfordii HOM05D000929 ORTHO05D004813 2.8e-25 119.8 73 82.2
Lj8C361G1 Lonicera japonica HOM05D000929 ORTHO05D004813 8.0e-25 118.2 76 75.0
Manes.17G001200 Manihot esculenta HOM05D000929 ORTHO05D004813 1.4e-24 117.5 76 78.9
PSO063G0460 Papaver somniferum HOM05D000929 ORTHO05D004813 1.4e-24 117.5 76 72.4
TWI32G0464 Tripterygium wilfordii HOM05D000929 ORTHO05D004813 1.8e-24 117.1 72 80.6
Rhsim11G0037600 Rhododendron simsii HOM05D000929 ORTHO05D004813 3.1e-24 116.3 76 73.7
Glyma.16G109200 Glycine max HOM05D000929 ORTHO05D004813 4.0e-24 115.9 76 72.4
Lalb_Chr05g0215171 Lupinus albus HOM05D000929 ORTHO05D004813 5.2e-24 115.5 76 72.4
PSO017G4228 Papaver somniferum HOM05D000929 ORTHO05D004813 6.8e-24 115.2 76 71.1
Lj4g0001871 Lotus japonicus HOM05D000929 ORTHO05D004813 8.9e-24 114.8 76 72.4
CiPaw.11G074100 Carya illinoinensis HOM05D000929 ORTHO05D004813 1.2e-23 114.4 76 73.7
Hma1.2p1_1991F.1_g310190 Hydrangea macrophylla HOM05D000929 ORTHO05D004813 1.2e-23 114.4 76 69.7
Lalb_Chr16g0391781 Lupinus albus HOM05D000929 ORTHO05D004813 1.2e-23 114.4 76 72.4
CDE06G0186 Ceratophyllum demersum HOM05D000929 ORTHO05D004813 1.5e-23 114.0 76 71.1
CANSAT35G1067 Cannabis sativa HOM05D000929 ORTHO05D004813 2.0e-23 113.6 76 71.1
Ca_22458_v3 Cicer arietinum L. HOM05D000929 ORTHO05D004813 2.0e-23 113.6 76 71.1
TAR362G0882 Trochodendron aralioides HOM05D000929 ORTHO05D004813 2.0e-23 113.6 76 75.0
TPR.G14264 Trifolium pratense HOM05D000929 ORTHO05D004813 3.4e-23 112.8 76 71.1
Hma1.2p1_0262F.1_g105380 Hydrangea macrophylla HOM05D000929 ORTHO05D004813 4.4e-23 112.5 76 69.7
Glyma.01G153200 Glycine max HOM05D000929 ORTHO05D004813 7.5e-23 111.7 76 69.7
Nitab4.5_0000986g0030 Nicotiana tabacum HOM05D000929 ORTHO05D004813 7.5e-23 111.7 76 71.1
Sp1g27400 Schrenkiella parvula HOM05D000929 ORTHO05D004813 7.5e-23 111.7 76 67.1
arahy.Tifrunner.gnm1.ann1.C95Z0S Arachis hypogaea HOM05D000929 ORTHO05D004813 9.8e-23 111.3 76 67.1
arahy.Tifrunner.gnm1.ann1.HVM0CV Arachis hypogaea HOM05D000929 ORTHO05D004813 9.8e-23 111.3 76 67.1
Glyma.16G076500 Glycine max HOM05D000929 ORTHO05D004813 9.8e-23 111.3 76 69.7
A09p34650 Brassica napus HOM05D000929 ORTHO05D004813 1.3e-22 110.9 76 68.4
BraA09t38999Z Brassica rapa HOM05D000929 ORTHO05D004813 1.3e-22 110.9 76 68.4
Glyma.09G218500 Glycine max HOM05D000929 ORTHO05D004813 1.3e-22 110.9 76 69.7
ATR0069G035 Amborella trichopoda HOM05D000929 ORTHO05D004813 1.7e-22 110.5 76 68.4
SalBow4G0955 Salvia bowleyana HOM05D000929 ORTHO05D004813 1.7e-22 110.5 76 67.1
Aqoxy2G03914 Aquilegia oxysepala HOM05D000929 ORTHO05D004813 2.2e-22 110.2 76 71.1
BcaB07g32818 Brassica carinata HOM05D000929 ORTHO05D004813 2.2e-22 110.2 76 68.4
BcaC05g26656 Brassica carinata HOM05D000929 ORTHO05D004813 2.2e-22 110.2 76 67.1
CiPaw.12G055500 Carya illinoinensis HOM05D000929 ORTHO05D004813 2.2e-22 110.2 76 73.7
Oeu046773.1 Olea europaea HOM05D000929 ORTHO05D004813 2.2e-22 110.2 76 73.7
Medtr8g072250 Medicago truncatula HOM05D000929 ORTHO05D004813 2.9e-22 109.8 76 69.7
Nitab4.5_0007507g0010 Nicotiana tabacum HOM05D000929 ORTHO05D004813 2.9e-22 109.8 76 68.4
Os01g0916200 Oryza sativa ssp. japonica HOM05D000929 ORTHO05D004813 2.9e-22 109.8 76 65.8
Thhalv10006719m.g Eutrema salsugineum HOM05D000929 ORTHO05D004813 4.9e-22 109.0 76 67.1
AT1G31730 Arabidopsis thaliana HOM05D000929 ORTHO05D004813 6.4e-22 108.6 76 67.1
Cc08_g05960 Coffea canephora HOM05D000929 ORTHO05D004813 6.4e-22 108.6 76 65.8
AL1G45800 Arabidopsis lyrata HOM05D000929 ORTHO05D004813 8.3e-22 108.2 76 67.1
CDE02G1294 Ceratophyllum demersum HOM05D000929 ORTHO05D004813 8.3e-22 108.2 76 68.4
DCAR_004536 Daucus carota HOM05D000929 ORTHO05D004813 8.3e-22 108.2 76 68.4
THA.LOC104798531 Tarenaya hassleriana HOM05D000929 ORTHO05D004813 8.3e-22 108.2 76 65.8
Zm00001eb143480 Zea mays HOM05D000929 ORTHO05D004813 8.3e-22 108.2 76 64.5
ECA240G1531 Erigeron canadensis HOM05D000929 ORTHO05D004813 1.1e-21 107.8 76 65.8
Phvul.002G122300 Phaseolus vulgaris HOM05D000929 ORTHO05D004813 1.1e-21 107.8 76 68.4
C05p30850 Brassica napus HOM05D000929 ORTHO05D004813 1.4e-21 107.5 76 67.1
CARHR031030 Cardamine hirsuta HOM05D000929 ORTHO05D004813 1.4e-21 107.5 76 65.8
Sed0019322 Sechium edule HOM05D000929 ORTHO05D004813 1.4e-21 107.5 76 71.1
MSTRG.11858 Avicennia marina HOM05D000929 ORTHO05D004813 1.9e-21 107.1 91 62.6
AUR62036405 Chenopodium quinoa HOM05D000929 ORTHO05D004813 1.9e-21 107.1 76 68.4
Migut.A00470 Erythranthe guttata HOM05D000929 ORTHO05D004813 1.9e-21 107.1 76 64.5
PGR031G1573 Punica granatum HOM05D000929 ORTHO05D004813 1.9e-21 107.1 76 68.4
Aa31LG9G15770 Aethionema arabicum HOM05D000929 ORTHO05D004813 2.4e-21 106.7 76 65.8
AUR62030759 Chenopodium quinoa HOM05D000929 ORTHO05D004813 2.4e-21 106.7 76 67.1
VMungo1215G3448 Vigna mungo HOM05D000929 ORTHO05D004813 2.4e-21 106.7 76 65.8
Ah.02g115480 Amaranthus hybridus HOM05D000929 ORTHO05D004813 4.1e-21 105.9 76 68.4
EL10Ac5g12482 Beta vulgaris HOM05D000929 ORTHO05D004813 4.1e-21 105.9 77 70.1
BcaC05g27184 Brassica carinata HOM05D000929 ORTHO05D004813 4.1e-21 105.9 76 65.8
BolC5t31815H Brassica oleracea HOM05D000929 ORTHO05D004813 4.1e-21 105.9 76 65.8
Hund10896 Selenicereus undatus HOM05D000929 ORTHO05D004813 4.1e-21 105.9 76 68.4
Hund14936 Selenicereus undatus HOM05D000929 ORTHO05D004813 4.1e-21 105.9 76 64.5
A09p39530 Brassica napus HOM05D000929 ORTHO05D004813 7.0e-21 105.1 77 64.9
C05p24930 Brassica napus HOM05D000929 ORTHO05D004813 7.0e-21 105.1 77 64.9
BraA09t39452Z Brassica rapa HOM05D000929 ORTHO05D004813 7.0e-21 105.1 77 64.9
CAN.G998.9 Capsicum annuum HOM05D000929 ORTHO05D004813 7.0e-21 105.1 65 76.9
BcaC05g26444 Brassica carinata HOM05D000929 ORTHO05D004813 9.2e-21 104.8 77 64.9
BolC5t31222H Brassica oleracea HOM05D000929 ORTHO05D004813 9.2e-21 104.8 77 64.9
Carub.0001s3003 Capsella rubella HOM05D000929 ORTHO05D004813 1.2e-20 104.4 76 63.2
Sc22g0002840 Simmondsia chinensis HOM05D000929 ORTHO05D004813 1.6e-20 104.0 76 65.8
MSTRG.25749 Avicennia marina HOM05D000929 ORTHO05D004813 2.0e-20 103.6 76 61.8
PGSC0003DMG400001953 Solanum tuberosum HOM05D000929 ORTHO05D004813 2.7e-20 103.2 76 63.2
ClCG11G016100 Citrullus lanatus HOM05D000929 ORTHO05D004813 3.5e-20 102.8 76 67.1
Lsat_1_v5_gn_3_20441 Lactuca sativa HOM05D000929 ORTHO05D004813 4.6e-20 102.4 69 69.6
CsaV3_4G014930 Cucumis sativus L. HOM05D000929 ORTHO05D004813 6.0e-20 102.1 76 67.1
CsaV3_UNG237520 Cucumis sativus L. HOM05D000929 ORTHO05D004813 6.0e-20 102.1 76 67.1
Sopen08g023910 Solanum pennellii HOM05D000929 ORTHO05D004813 6.0e-20 102.1 76 64.5
HanXRQChr03g0084681 Helianthus annuus HOM05D000929 ORTHO05D004813 7.8e-20 101.7 76 64.5
MELO3C010526.2 Cucumis melo HOM05D000929 ORTHO05D004813 2.3e-19 100.1 76 65.8
HanXRQChr13g0412771 Helianthus annuus HOM05D000929 ORTHO05D004813 3.0e-19 99.8 76 63.2
Sed0024593 Sechium edule HOM05D000929 ORTHO05D004813 3.0e-19 99.8 76 65.8
Solyc08g075310.4 Solanum lycopersicum HOM05D000929 ORTHO05D004813 3.0e-19 99.8 76 63.2
SGA_v2.0_scaffold96G29109 Striga asiatica HOM05D000929 ORTHO05D004813 5.0e-19 99.0 76 59.2
THA.LOC104814388 Tarenaya hassleriana HOM05D000929 ORTHO05D004813 6.6e-19 98.6 91 57.1
HPP92_006225 Vanilla planifolia HOM05D000929 ORTHO05D004813 1.1e-18 97.8 76 59.2
Dinv37432 Davidia involucrata HOM05D000929 ORTHO05D004813 7.3e-18 95.1 94 58.5
SHI32765 Sapria himalayana HOM05D000929 ORTHO05D004813 1.6e-17 94.0 76 60.5
Lsat_1_v5_gn_6_77000 Lactuca sativa HOM05D000929 ORTHO05D004813 2.3e-16 90.1 62 64.5
QL93p0143_0032 Quercus lobata HOM05D000929 ORTHO05D004813 2.1e-12 77.0 49 73.5
SMO117G0056 Selaginella moellendorffii HOM05D000929 ORTHO05D004813 4.6e-12 75.9 59 57.6
Lalb_Chr09g0325031 Lupinus albus HOM05D000929 ORTHO05D004813 1.3e-11 74.3 51 64.7
CBR_g31532 Chara braunii HOM05D000929 ORTHO05D004813 4.3e-10 69.3 56 51.8
Mapoly0011s0005 Marchantia polymorpha HOM05D000929 ORTHO05D004813 4.3e-10 69.3 56 60.7
AagrBONN_evm.TU.Sc2ySwM_344.3572 Anthoceros agrestis HOM05D000929 ORTHO05D004813 5.6e-10 68.9 71 49.3
Pp3c12_18560 Physcomitrium patens HOM05D000929 ORTHO05D004813 2.2e-06 57.0 75 42.7
Pp3c12_14810 Physcomitrium patens HOM05D000929 ORTHO05D004813 3.7e-06 56.2 75 42.7


User provided reference genes

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