Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G043600 Prunus persica HOM05D007266 ORTHO05D005982 4.0e-240 834.3 420 100.0
MD07G1043900 Malus domestica HOM05D007266 ORTHO05D005982 1.1e-165 587.0 420 73.3
FvH4_7g03880 Fragaria vesca HOM05D007266 ORTHO05D005982 6.8e-155 551.2 421 69.1
FAN06G1886 Fragaria x ananassa HOM05D007266 ORTHO05D005982 6.8e-155 551.2 423 69.5
RcHm_v2.0_Chr1g0327331 Rosa chinensis HOM05D007266 ORTHO05D005982 2.6e-154 549.3 425 71.3
FAN10G1696 Fragaria x ananassa HOM05D007266 ORTHO05D005982 3.2e-152 542.3 424 68.6
FAN03G0408 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.2e-151 540.4 424 68.6
FAN01G0656 Fragaria x ananassa HOM05D007266 ORTHO05D005982 2.3e-150 536.2 424 68.4
Cfa010951 Carpinus fangiana HOM05D007266 ORTHO05D005982 2.2e-89 333.6 403 51.6
Haze_02992 Corylus avellana HOM05D007266 ORTHO05D005982 1.7e-84 317.4 419 48.7
Sabra01G0022900 Salix brachista HOM05D007266 ORTHO05D005982 1.5e-77 294.3 402 46.8
CiPaw.14G009500 Carya illinoinensis HOM05D007266 ORTHO05D005982 5.7e-77 292.4 419 45.3
Atru.chr12.1311 Acer truncatum HOM05D007266 ORTHO05D005982 1.4e-75 287.7 404 45.5
Thecc.10G142300 Theobroma cacao HOM05D007266 ORTHO05D005982 1.8e-75 287.3 385 47.3
TWI15G1169 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 2.7e-74 283.5 406 45.8
CiPaw.06G056200 Carya illinoinensis HOM05D007266 ORTHO05D005982 4.1e-67 259.6 402 44.3
Manes.04G156300 Manihot esculenta HOM05D007266 ORTHO05D005982 7.3e-64 248.8 402 41.5
Duzib128G0414 Durio zibethinus HOM05D007266 ORTHO05D005982 4.7e-63 246.1 387 42.4
Actinidia01687 Actinidia chinensis HOM05D000639 ORTHO05D007519 6.1e-63 245.7 389 44.0
Rhsim01G0124500 Rhododendron simsii HOM05D007266 ORTHO05D005982 6.1e-63 245.7 343 46.1
FAN03G2213 Fragaria x ananassa HOM05D007266 ORTHO05D005982 6.8e-62 242.3 202 67.3
Actinidia01519 Actinidia chinensis HOM05D007266 ORTHO05D005982 2.0e-61 240.7 389 43.2
Potri.001G031800 Populus trichocarpa HOM05D007266 ORTHO05D005982 7.5e-61 238.8 303 49.5
vmacro21145 Vaccinium macrocarpon HOM05D007266 ORTHO05D005982 9.8e-61 238.4 388 41.2
Manes.11G007700 Manihot esculenta HOM05D007266 ORTHO05D005982 7.0e-59 232.3 337 45.4
TAR369G0213 Trochodendron aralioides HOM05D007266 ORTHO05D005982 7.8e-58 228.8 401 42.1
COL.COLO4_06637 Corchorus olitorius HOM05D007266 ORTHO05D005982 1.3e-57 228.0 378 42.3
TAR633G1403 Trochodendron aralioides HOM05D007266 ORTHO05D005982 3.0e-57 226.9 408 41.4
TWI63G1068 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 6.2e-55 219.2 280 50.0
TWI38G2050 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 1.5e-53 214.5 393 41.5
Sabra03G0144500 Salix brachista HOM05D007266 ORTHO05D005982 2.6e-53 213.8 480 34.6
GSVIVG01036604001 Vitis vinifera HOM05D007266 ORTHO05D005982 1.6e-50 204.5 292 45.5
Hma1.2p1_0837F.1_g226230 Hydrangea macrophylla HOM05D007266 ORTHO05D005982 6.6e-49 199.1 396 39.6
QL04p021455 Quercus lobata HOM05D007266 ORTHO05D005982 4.3e-48 196.4 217 54.4
QL07p029255 Quercus lobata HOM05D007266 ORTHO05D005982 4.3e-48 196.4 217 54.4
Ca_24011_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 7.3e-48 195.7 331 39.9
Ca_24018_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 7.3e-48 195.7 331 39.9
Medtr8g040640 Medicago truncatula HOM05D007266 ORTHO05D005982 1.6e-47 194.5 329 38.0
Glyma.13G191900 Glycine max HOM05D007266 ORTHO05D005982 6.8e-46 189.1 399 34.8
Psat4g144600 Pisum sativum HOM05D007266 ORTHO05D005982 1.3e-44 184.9 333 36.9
TPR.G8521 Trifolium pratense HOM05D007266 ORTHO05D005982 3.2e-43 180.3 332 37.0
arahy.Tifrunner.gnm1.ann1.E0LNSJ Arachis hypogaea HOM05D007266 ORTHO05D005982 4.1e-43 179.9 429 33.8
Eucgr.J00068 Eucalyptus grandis HOM05D007266 ORTHO05D005982 7.1e-43 179.1 340 41.2
Dinv11235 Davidia involucrata HOM05D007266 ORTHO05D005982 9.2e-43 178.7 387 38.5
Glyma.04G133400 Glycine max HOM05D007266 ORTHO05D005982 1.6e-42 177.9 337 38.3
Ciclev10001901m.g Citrus clementina HOM05D007266 ORTHO05D005982 6.0e-42 176.0 285 41.4
Phvul.011G200200 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 1.3e-41 174.9 353 35.1
arahy.Tifrunner.gnm1.ann1.5HCQ47 Arachis hypogaea HOM05D007266 ORTHO05D005982 1.7e-41 174.5 441 33.1
Glyma.15G229400 Glycine max HOM05D007266 ORTHO05D005982 1.7e-41 174.5 353 35.1
Gorai.009G299100 Gossypium raimondii HOM05D007266 ORTHO05D005982 4.3e-40 169.9 333 37.8
VMungo1127G1999 Vigna mungo HOM05D007266 ORTHO05D005982 3.6e-39 166.8 367 34.1
Potri.003G193800 Populus trichocarpa HOM05D007266 ORTHO05D005982 8.1e-39 165.6 240 45.8
Gohir.A05G283500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 1.5e-37 161.4 334 36.5
PGR044G2654 Punica granatum HOM05D007266 ORTHO05D005982 2.6e-37 160.6 363 35.8
Lalb_Chr19g0132921 Lupinus albus HOM05D007266 ORTHO05D005982 7.6e-37 159.1 349 34.4
VMungo1080G1603 Vigna mungo HOM05D007266 ORTHO05D005982 9.9e-37 158.7 338 36.1
Lj3g0024959 Lotus japonicus HOM05D007266 ORTHO05D005982 1.7e-36 157.9 331 33.5
Phvul.005G018800 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 1.9e-35 154.5 385 34.3
Hund13391 Selenicereus undatus HOM05D007266 ORTHO05D005982 6.0e-34 149.4 359 36.5
DCAR_029711 Daucus carota HOM05D007266 ORTHO05D005982 3.0e-33 147.1 389 34.4
QL04p021458 Quercus lobata HOM05D007266 ORTHO05D005982 5.6e-32 142.9 215 45.1
QL07p029253 Quercus lobata HOM05D007266 ORTHO05D005982 5.6e-32 142.9 215 45.1
CSS0040931 Camellia sinensis var. sinensis HOM05D007266 ORTHO05D005982 1.4e-30 138.3 201 43.8
arahy.Tifrunner.gnm1.ann1.IJY9PN Arachis hypogaea HOM05D007266 ORTHO05D005982 4.0e-30 136.7 334 31.7
arahy.Tifrunner.gnm1.ann1.78H5KP Arachis hypogaea HOM05D007266 ORTHO05D005982 1.5e-29 134.8 347 31.7
Cpa.g.sc169.34 Carica papaya HOM05D007266 ORTHO05D005982 7.6e-29 132.5 405 31.4
Lj9C658G11 Lonicera japonica HOM05D007266 ORTHO05D005982 7.6e-29 132.5 257 39.3
Oeu013066.1 Olea europaea HOM05D007266 ORTHO05D005982 1.3e-28 131.7 335 33.1
Lj3g0005568 Lotus japonicus HOM05D007266 ORTHO05D005982 6.4e-28 129.4 274 34.7
Dinv32008 Davidia involucrata HOM05D007266 ORTHO05D005982 5.1e-25 119.8 199 41.2
Nitab4.5_0004168g0140 Nicotiana tabacum HOM05D007266 ORTHO05D005982 2.5e-24 117.5 359 31.2
CANSAT56G2989 Cannabis sativa HOM05D007266 ORTHO05D005982 4.3e-24 116.7 350 34.3
THA.LOC104799328 Tarenaya hassleriana HOM05D008873 ORTHO05D005982 4.3e-24 116.7 336 31.0
Nitab4.5_0002838g0050 Nicotiana tabacum HOM05D007266 ORTHO05D005982 5.6e-24 116.3 347 33.1
Thhalv10021314m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 1.6e-23 114.8 340 31.5
Lsat_1_v5_gn_1_118261 Lactuca sativa HOM05D007266 ORTHO05D005982 2.8e-23 114.0 308 31.8
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 4.8e-23 113.2 373 31.1
Glyma.11G158200 Glycine max HOM05D007266 ORTHO05D005982 6.2e-23 112.8 316 32.3
Gohir.D05G284500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 9.0e-22 109.0 111 55.9
EL10Ac2g02761 Beta vulgaris HOM05D007266 ORTHO05D005982 1.2e-21 108.6 364 32.4
PGSC0003DMG402003286 Solanum tuberosum HOM05D007266 ORTHO05D005982 1.5e-21 108.2 351 33.0
Oeu058685.1 Olea europaea HOM05D007266 ORTHO05D005982 2.0e-21 107.8 339 31.6
HanXRQChr05g0146291 Helianthus annuus HOM05D007266 ORTHO05D005982 2.6e-21 107.5 329 30.7
Sopen01g040350 Solanum pennellii HOM05D007266 ORTHO05D005982 3.4e-21 107.1 364 31.0
BcaC05g29270 Brassica carinata HOM05D008873 ORTHO05D005982 6.4e-20 102.8 344 30.5
AL3G23970 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 8.4e-20 102.4 343 30.6
Nn7g36823 Nelumbo nucifera HOM05D007266 ORTHO05D005982 8.4e-20 102.4 347 33.7
A05p37060 Brassica napus HOM05D008873 ORTHO05D005982 2.4e-19 100.9 344 30.2
Sp3g10530 Schrenkiella parvula HOM05D008873 ORTHO05D005982 2.4e-19 100.9 337 31.5
AUR62031740 Chenopodium quinoa HOM05D007266 ORTHO05D005982 5.4e-19 99.8 376 31.1
Carub.0003s1168 Capsella rubella HOM05D008873 ORTHO05D005982 9.3e-19 99.0 338 31.1
C05p55490 Brassica napus HOM05D008873 ORTHO05D005982 1.6e-18 98.2 344 29.9
Aa31LG3G6540 Aethionema arabicum HOM05D008873 ORTHO05D005982 7.9e-18 95.9 335 31.0
BcaB04g21084 Brassica carinata HOM05D008873 ORTHO05D005982 1.3e-17 95.1 348 29.3
BcaB04g21086 Brassica carinata HOM05D008873 ORTHO05D005982 1.3e-17 95.1 348 29.3
BcaC06g32527 Brassica carinata HOM05D008873 ORTHO05D005982 1.3e-17 95.1 341 30.5
ECA248G2125 Erigeron canadensis HOM05D007266 ORTHO05D005982 3.0e-17 94.0 268 33.2
Sp6g35890 Schrenkiella parvula HOM05D008873 ORTHO05D005982 3.0e-17 94.0 335 27.8
AL6G17140 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 3.9e-17 93.6 339 28.3
Ah.10g030010 Amaranthus hybridus HOM05D007266 ORTHO05D005982 6.7e-17 92.8 341 30.2
AT3G12320 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 6.7e-17 92.8 334 29.9
Carub.0006s0591 Capsella rubella HOM05D008873 ORTHO05D005982 8.7e-17 92.4 342 31.0
Lalb_Chr01g0007431 Lupinus albus HOM05D007266 ORTHO05D005982 8.7e-17 92.4 228 32.0
HanXRQChr11g0341241 Helianthus annuus HOM05D007266 ORTHO05D005982 2.5e-16 90.9 222 35.1
Thhalv10014291m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 4.3e-16 90.1 337 30.0
BraA10t44925Z Brassica rapa HOM05D008873 ORTHO05D005982 7.4e-16 89.4 338 28.7
A10p28780 Brassica napus HOM05D008873 ORTHO05D005982 9.6e-16 89.0 338 28.7
BolC9t59656H Brassica oleracea HOM05D008873 ORTHO05D005982 1.3e-15 88.6 337 29.4
A03p37600 Brassica napus HOM05D008873 ORTHO05D005982 1.6e-15 88.2 336 29.5
BolC5t34215H Brassica oleracea HOM05D008873 ORTHO05D005982 1.6e-15 88.2 361 28.5
CARHR086860 Cardamine hirsuta HOM05D008873 ORTHO05D005982 1.6e-15 88.2 340 29.4
AUR62032625 Chenopodium quinoa HOM05D007266 ORTHO05D005982 2.1e-15 87.8 249 36.9
Sc11g0006320 Simmondsia chinensis HOM05D007266 ORTHO05D005982 4.8e-15 86.7 200 34.5
Ah.12g065060 Amaranthus hybridus HOM05D007266 ORTHO05D005982 6.2e-15 86.3 334 29.0
BraA03t12914Z Brassica rapa HOM05D008873 ORTHO05D005982 6.2e-15 86.3 336 29.2
MBI13_g09214_MAGBIO Magnolia biondii HOM05D007266 ORTHO05D005982 8.1e-15 85.9 308 28.9
TAR623G0806 Trochodendron aralioides HOM05D007266 ORTHO05D005982 1.1e-14 85.5 150 42.7
C09p69120 Brassica napus HOM05D008873 ORTHO05D005982 1.8e-14 84.7 337 29.1
BcaC01g04052 Brassica carinata HOM05D008873 ORTHO05D005982 5.3e-14 83.2 336 29.2
C03p45590 Brassica napus HOM05D008873 ORTHO05D005982 5.3e-14 83.2 336 29.2
BolC3t16836H Brassica oleracea HOM05D008873 ORTHO05D005982 5.3e-14 83.2 336 29.2
Aqoxy1G00397_Aqoxy1G00398 Aquilegia oxysepala HOM05D007266 ORTHO05D005982 6.9e-14 82.8 230 32.6
TAR623G0101 Trochodendron aralioides HOM05D007266 ORTHO05D005982 9.0e-14 82.4 133 40.6
SalBow5G4193 Salvia bowleyana HOM05D007266 ORTHO05D005982 4.5e-13 80.1 332 29.2
BcaNung04207 Brassica carinata HOM05D008873 ORTHO05D005982 9.9e-13 79.0 343 28.0
Lalb_Chr01g0007421 Lupinus albus HOM05D007266 ORTHO05D005982 1.7e-12 78.2 126 40.5
Migut.B01189 Erythranthe guttata HOM05D007266 ORTHO05D005982 2.9e-12 77.4 329 27.4
PSO135G0681 Papaver somniferum HOM05D007266 ORTHO05D005982 2.9e-12 77.4 179 36.9
PSO384G1467 Papaver somniferum HOM05D007266 ORTHO05D005982 2.9e-12 77.4 213 33.8
Peaxi162Scf00220g00313 Petunia axillaris HOM05D007266 ORTHO05D005982 4.9e-12 76.6 110 46.4
Actinidia01518 Actinidia chinensis HOM05D007266 ORTHO05D005982 2.5e-11 74.3 87 46.0
BraA05t22503Z Brassica rapa HOM05D008873 ORTHO05D005982 4.2e-11 73.6 248 30.6
Solyc01g096630.3 Solanum lycopersicum HOM05D007266 ORTHO05D005982 2.1e-10 71.2 119 44.5
AT5G06980 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 3.9e-09 67.0 314 26.4
SGA_v2.0_scaffold124G33643 Striga asiatica HOM05D007266 ORTHO05D005982 1.1e-08 65.5 97 43.3
EL10Ac2g02826 Beta vulgaris HOM05D004414 ORTHO05D001824 2.5e-08 64.3 162 30.2
Oeu026157.1 Olea europaea HOM05D003662 ORTHO05D001824 4.3e-08 63.5 144 36.1
BcaB04g18684 Brassica carinata HOM05D008873 ORTHO05D005982 5.6e-08 63.2 100 39.0
CARHR206160 Cardamine hirsuta HOM05D008873 ORTHO05D005982 1.3e-07 62.0 104 40.4
Gohir.D13G054800 Gossypium hirsutum HOM05D003662 ORTHO05D001824 2.1e-07 61.2 130 33.1
Gorai.013G061600 Gossypium raimondii HOM05D003662 ORTHO05D001824 2.1e-07 61.2 130 33.1
BcaB01g05709 Brassica carinata HOM05D008873 ORTHO05D005982 2.8e-07 60.8 334 26.9
SHI11361 Sapria himalayana HOM05D000436 ORTHO05D000678 2.8e-07 60.8 328 26.5
AUR62026844 Chenopodium quinoa HOM05D004414 ORTHO05D001824 4.8e-07 60.1 179 29.6
AUR62037207 Chenopodium quinoa HOM05D004414 ORTHO05D001824 4.8e-07 60.1 179 30.2
TWI23G0811 Tripterygium wilfordii HOM05D003662 ORTHO05D001824 6.2e-07 59.7 120 34.2
Gohir.A13G066800 Gossypium hirsutum HOM05D003662 ORTHO05D001824 1.1e-06 58.9 114 35.1
Aa31sc25G30 Aethionema arabicum HOM05D008873 ORTHO05D005982 1.8e-06 58.2 325 24.3
AagrBONN_evm.TU.Sc2ySwM_344.4535 Anthoceros agrestis HOM05D004414 ORTHO05D001824 1.8e-06 58.2 104 40.4
Oeu056557.1 Olea europaea HOM05D004414 ORTHO05D001824 3.1e-06 57.4 150 27.3
Medtr4g094248 Medicago truncatula HOM05D003662 ORTHO05D001824 4.0e-06 57.0 131 34.4
Gorai.009G296300 Gossypium raimondii HOM05D004414 ORTHO05D001824 5.3e-06 56.6 109 33.9
Mapoly0014s0165 Marchantia polymorpha HOM05D004414 ORTHO05D001824 5.3e-06 56.6 104 39.4
Hund06389 Selenicereus undatus HOM05D003662 ORTHO05D001824 5.3e-06 56.6 123 33.3
Ah.12g062930 Amaranthus hybridus HOM05D004414 ORTHO05D001824 6.9e-06 56.2 105 36.2
CANSAT56G3557 Cannabis sativa HOM05D004414 ORTHO05D001824 9.0e-06 55.8 126 32.5
Cc00_g16250 Coffea canephora HOM05D004414 ORTHO05D001824 9.0e-06 55.8 193 24.4


User provided reference genes

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