Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 0.0e+00 1148.3 574 100.0
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 6.2e-284 980.3 573 84.6
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 3.1e-275 951.4 574 82.9
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 3.4e-266 921.4 563 80.8
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 6.1e-263 910.6 587 76.5
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 1.5e-261 906.0 556 80.8
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 2.2e-257 892.1 568 77.5
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 2.9e-257 891.7 572 76.2
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 4.7e-255 884.4 577 75.9
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 3.5e-250 868.2 576 73.4
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 1.1e-248 863.2 578 73.5
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 7.2e-248 860.5 581 72.8
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 2.7e-247 858.6 603 71.6
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 9.7e-245 850.1 575 72.9
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 6.3e-244 847.4 580 72.1
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 2.0e-242 842.4 579 71.0
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 3.5e-242 841.6 579 71.2
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 7.7e-242 840.5 581 71.1
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 2.2e-241 839.0 576 71.9
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 3.8e-241 838.2 577 70.7
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 8.5e-241 837.0 581 70.9
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 2.5e-240 835.5 566 71.4
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 7.2e-240 833.9 579 71.2
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 3.6e-239 831.6 576 70.1
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 4.7e-239 831.2 579 69.8
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 4.0e-238 828.2 537 73.7
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 9.8e-237 823.5 586 69.6
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 1.4e-235 819.7 581 68.8
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 5.4e-235 817.8 575 70.6
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 1.2e-234 816.6 584 69.0
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 5.9e-234 814.3 566 68.9
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 3.8e-233 811.6 579 69.3
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 1.5e-232 809.7 580 68.3
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 2.5e-232 808.9 578 69.0
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 5.5e-232 807.7 583 67.2
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 7.2e-232 807.4 544 71.5
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 2.7e-231 805.4 579 69.1
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 1.0e-230 803.5 558 70.3
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 1.4e-230 803.1 582 67.9
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 1.4e-230 803.1 565 69.2
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 1.2e-229 800.0 578 67.5
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 1.5e-229 799.7 579 68.4
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 2.6e-229 798.9 585 67.4
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 5.7e-229 797.7 537 70.0
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 1.3e-228 796.6 572 68.5
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 4.9e-228 794.7 556 67.8
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 3.1e-227 792.0 579 67.0
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 4.5e-226 788.1 579 66.7
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 4.5e-226 788.1 579 67.4
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 7.7e-226 787.3 579 67.2
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 7.7e-226 787.3 579 67.2
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 2.3e-225 785.8 579 67.2
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 1.9e-224 782.7 570 67.2
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 7.3e-224 780.8 597 65.0
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 9.5e-224 780.4 567 66.7
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 1.8e-222 776.2 568 68.1
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 3.0e-222 775.4 577 66.6
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 1.5e-221 773.1 585 65.6
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 1.5e-221 773.1 575 65.7
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 1.7e-220 769.6 572 64.5
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 1.4e-219 766.5 514 71.6
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 9.2e-219 763.8 485 75.5
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 2.0e-218 762.7 575 63.3
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 3.5e-218 761.9 629 61.2
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 8.0e-215 750.7 579 66.0
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 1.0e-214 750.4 546 67.6
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 5.8e-213 744.6 570 64.0
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 5.8e-213 744.6 572 63.1
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 1.7e-209 733.0 463 76.5
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 1.7e-209 733.0 567 61.9
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 2.3e-209 732.6 649 57.8
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 2.3e-209 732.6 568 62.0
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 1.2e-202 710.3 489 70.3
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 1.7e-201 706.4 460 72.2
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 8.1e-199 697.6 460 71.1
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 7.6e-197 691.0 573 58.6
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 1.7e-196 689.9 462 71.6
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 9.6e-192 674.1 460 70.2
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 2.9e-188 662.5 617 57.1
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 6.6e-185 651.4 463 70.0
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 2.1e-183 646.4 433 71.1
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 1.3e-180 637.1 542 60.9
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 1.1e-179 634.0 402 76.1
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 3.0e-177 625.9 511 62.6
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 1.9e-176 623.2 545 60.0
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 2.8e-175 619.4 533 59.3
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 8.1e-175 617.8 464 66.2
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 2.8e-159 566.2 568 49.1
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 1.1e-158 564.3 548 51.1
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 2.9e-156 556.2 351 76.4
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 4.3e-152 542.3 530 49.8
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 7.2e-147 525.0 534 49.8
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 3.6e-146 522.7 541 54.2
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 3.0e-145 519.6 395 63.3
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 9.7e-144 514.6 508 53.7
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 2.6e-141 506.5 362 67.4
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 7.0e-126 455.3 716 42.9
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 2.1e-122 443.7 355 61.1
Ca_26912_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 2.3e-121 440.3 296 68.9
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 4.0e-113 412.9 267 73.0
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 2.2e-111 407.1 270 73.7
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 3.1e-110 403.3 311 63.3
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 9.8e-104 381.7 239 75.7
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 9.5e-99 365.2 547 42.4
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 1.7e-92 344.4 568 38.9
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 4.4e-88 329.7 249 61.8
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 7.8e-77 292.4 471 36.7
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 4.7e-74 283.1 194 71.6
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 1.5e-72 278.1 185 71.4
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 3.8e-71 273.5 533 36.6
Cre07.g313350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 1.4e-57 228.4 610 28.7
Lj9A654T55 Lonicera japonica HOM05D006097 ORTHO05D008538 3.1e-57 227.3 138 76.8
Pp3s32_630 Physcomitrium patens HOM05D006097 ORTHO05D008538 2.2e-55 221.1 522 31.0
QL04p017840 Quercus lobata HOM05D006097 ORTHO05D008538 9.3e-54 215.7 124 83.9
PRCOL_00006109 Prasinoderma coloniale HOM05D006097 ORTHO05D008538 5.3e-49 199.9 397 35.5
CDE06G0927 Ceratophyllum demersum HOM05D006097 ORTHO05D020391 1.0e-31 142.5 133 57.1
Ca_03883_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 3.8e-31 140.6 97 71.1
Nn2g16009 Nelumbo nucifera HOM05D006097 ORTHO05D008538 4.1e-25 120.6 84 67.9
Medtr1224s0010 Medicago truncatula HOM05D006097 ORTHO05D008538 1.2e-24 119.0 573 26.2
CDE06G2151 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 1.3e-23 115.5 83 66.3
DCAR_031243 Daucus carota HOM05D006097 ORTHO05D020391 1.3e-23 115.5 115 52.2
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 1.4e-22 112.1 170 43.5
SEGI_33421 Sequoiadendron giganteum HOM05D006097 ORTHO05D020391 4.7e-21 107.1 111 53.2
SMO212G0005 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 3.0e-20 104.4 197 34.5
SMO274G0019 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 3.0e-20 104.4 112 47.3
SMO125G0001 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 7.4e-19 99.8 140 41.4
RcHm_v2.0_Chr6g0254811 Rosa chinensis HOM05D006097 ORTHO05D020391 1.7e-18 98.6 57 84.2
SMO005G0015 Selaginella moellendorffii HOM05D006097 ORTHO05D011308 1.7e-18 98.6 105 47.6
SMO009G0029 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 3.7e-18 97.4 118 45.8
Carub.0002s2671 Capsella rubella HOM05D006097 ORTHO05D008538 2.4e-17 94.7 57 66.7
CDE06G1678 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 7.5e-11 73.2 55 63.6
Nn313s46297 Nelumbo nucifera HOM05D006097 ORTHO05D008538 2.7e-08 64.7 46 67.4
Hma1.2p1_0269F.1_g107740 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 6.5e-07 60.1 38 68.4
Hma1.2p1_3244F.1_g334325 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 6.5e-07 60.1 38 68.4
Haze_01792 Corylus avellana HOM05D000242 ORTHO05D000700 3.2e-06 57.8 48 58.3


User provided reference genes

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