Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 2371.3 1112 100.0
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 2189.8 1112 93.5
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 0.0e+00 2088.9 1112 86.7
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1996.1 1110 82.4
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 0.0e+00 1993.0 1110 82.3
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1960.3 1122 80.8
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 0.0e+00 1940.6 1110 79.5
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1926.8 1116 80.2
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 0.0e+00 1915.6 1115 79.3
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 0.0e+00 1907.5 1115 77.4
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1898.2 1115 77.6
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 0.0e+00 1898.2 1116 79.0
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 0.0e+00 1893.2 1115 77.4
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1890.5 1115 77.5
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1887.1 1111 79.5
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 0.0e+00 1885.9 1115 76.5
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 0.0e+00 1866.7 1114 76.4
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 0.0e+00 1862.0 1115 75.7
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 0.0e+00 1846.6 1112 76.1
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 0.0e+00 1828.1 1112 75.0
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1825.1 1110 75.0
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1815.8 1112 73.7
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 0.0e+00 1814.3 1112 74.0
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1810.4 1067 76.9
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1807.0 1113 73.9
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 0.0e+00 1800.8 1078 76.3
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 0.0e+00 1798.9 1114 73.2
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 0.0e+00 1785.4 1111 72.0
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 0.0e+00 1780.4 1113 72.0
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 0.0e+00 1775.0 1110 72.0
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 0.0e+00 1774.6 1113 71.6
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 0.0e+00 1772.7 1114 72.0
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 0.0e+00 1771.5 1119 71.8
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1771.1 1110 71.8
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 0.0e+00 1769.2 1113 72.3
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 0.0e+00 1768.1 1111 71.8
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 0.0e+00 1767.3 1107 71.6
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 0.0e+00 1766.1 1110 72.4
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1765.0 1224 68.0
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1764.6 1101 72.0
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 0.0e+00 1763.8 1122 71.9
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1761.9 1103 72.0
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 0.0e+00 1760.7 1108 71.3
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1760.0 1111 71.3
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 0.0e+00 1758.4 1109 71.5
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 0.0e+00 1756.9 1110 71.4
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 0.0e+00 1756.1 1113 71.4
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 0.0e+00 1753.4 1110 70.9
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 0.0e+00 1752.6 1112 71.3
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1752.6 1119 71.4
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1752.3 1117 72.5
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 0.0e+00 1751.5 1114 71.2
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 0.0e+00 1750.3 1110 70.8
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1750.3 1109 71.4
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1749.2 1100 71.9
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1748.4 1109 71.2
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 0.0e+00 1746.9 1117 70.6
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 0.0e+00 1746.5 991 81.0
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 0.0e+00 1745.7 1110 70.7
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 0.0e+00 1744.2 1110 72.0
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 0.0e+00 1740.3 1110 71.3
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1735.3 1107 70.2
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 0.0e+00 1734.2 1107 71.3
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 0.0e+00 1729.9 1099 71.6
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 0.0e+00 1729.5 1112 71.0
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 0.0e+00 1721.8 1058 73.7
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 0.0e+00 1716.0 1121 69.6
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1713.0 1068 72.1
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 0.0e+00 1699.1 1105 69.7
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 0.0e+00 1698.3 1108 69.9
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 0.0e+00 1696.8 1109 68.7
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 0.0e+00 1693.3 1109 68.9
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1687.5 1109 68.4
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 0.0e+00 1683.7 1112 68.5
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 0.0e+00 1681.4 1106 68.6
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1668.7 1100 68.5
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1656.0 1110 67.8
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 0.0e+00 1639.4 1124 67.3
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 0.0e+00 1639.0 1143 65.9
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 0.0e+00 1632.8 1118 66.7
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 0.0e+00 1632.1 1120 65.7
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 0.0e+00 1630.9 1103 67.9
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 0.0e+00 1570.4 1102 63.8
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 0.0e+00 1568.9 1160 64.7
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 0.0e+00 1538.1 897 79.3
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 0.0e+00 1525.4 994 70.7
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 0.0e+00 1504.2 1074 63.8
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 0.0e+00 1488.4 917 74.3
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 0.0e+00 1329.3 833 74.3
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1325.8 832 72.4
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 0.0e+00 1313.1 1034 59.2
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 0.0e+00 1310.4 1134 53.7
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 0.0e+00 1308.9 1111 54.6
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1285.8 750 77.3
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 0.0e+00 1268.8 1110 55.0
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 0.0e+00 1219.9 758 73.7
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1213.4 739 73.7
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 0.0e+00 1169.5 665 78.3
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 0.0e+00 1164.1 1129 50.5
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1122.1 689 76.3
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 1.1e-303 1047.0 1140 46.7
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 1.8e-266 923.3 763 59.1
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 3.0e-242 842.8 498 76.7
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 2.2e-221 773.5 568 61.1
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 2.2e-221 773.5 518 68.0
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 5.5e-220 768.8 518 68.0
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 6.4e-168 595.9 1503 30.3
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 6.2e-155 552.7 384 66.9
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 1.3e-149 535.0 602 46.8
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 3.4e-145 520.4 283 83.0
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 6.5e-128 463.0 1109 30.8
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 3.4e-121 440.7 240 82.9
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 2.2e-112 411.4 272 71.7
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 1.5e-111 408.7 841 32.7
RcHm_v2.0_Chr1g0324211 Rosa chinensis HOM05D005112 ORTHO05D006681 2.0e-100 371.7 203 83.3
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 1.8e-93 348.6 197 78.7
MD07G1040100 Malus domestica HOM05D005112 ORTHO05D006681 1.8e-90 338.6 174 91.4
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 1.6e-86 325.5 259 57.5
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 1.0e-77 296.2 208 63.5
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 6.4e-75 287.0 164 84.8
Nitab4.5_0002123g0050 Nicotiana tabacum HOM05D005112 ORTHO05D006681 2.0e-68 265.4 156 72.4
Cpa.g.sc540.4 Carica papaya HOM05D005112 ORTHO05D006681 4.7e-62 244.2 130 79.2
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 6.4e-59 233.8 208 52.4
MD07G1039900 Malus domestica HOM05D005112 ORTHO05D006681 1.1e-58 233.0 125 84.8
Hma1.2p1_1202F.1_g266800 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 1.9e-50 205.7 121 76.0
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 1.1e-39 169.9 198 44.4
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 1.2e-36 159.8 171 47.4
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 3.4e-36 158.3 136 52.9
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 2.4e-34 152.1 182 45.1
SEGI_07839 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 2.4e-34 152.1 105 58.1
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 7.1e-34 150.6 144 50.7
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 9.3e-34 150.2 142 51.4
CSS0018226 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 1.6e-33 149.4 89 74.2
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 3.3e-31 141.7 82 74.4
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 4.0e-29 134.8 132 52.3
SEGI_07313 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 4.5e-28 131.3 75 70.7
FvH4_4g11040 Fragaria vesca HOM05D005112 ORTHO05D006681 5.8e-28 131.0 95 65.3
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 3.2e-26 125.2 141 49.6
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 2.1e-22 112.5 66 69.7
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 3.1e-21 108.6 53 86.8
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 5.3e-21 107.8 100 55.0
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 1.2e-20 106.7 118 50.8
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 4.2e-18 98.2 84 53.6
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 7.2e-18 97.4 100 48.0
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 2.7e-17 95.5 100 47.0
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 1.8e-16 92.8 44 84.1
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 1.1e-15 90.1 44 84.1
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 3.3e-15 88.6 47 76.6
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 9.7e-15 87.0 44 79.5
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 1.6e-14 86.3 136 39.7
Cfa026367 Carpinus fangiana HOM05D005112 ORTHO05D123685 2.6e-12 79.0 375 24.0
Actinidia21519 Actinidia chinensis HOM05D000850 ORTHO05D000266 5.9e-12 77.8 50 68.0
BcaC08g43326 Brassica carinata HOM05D005112 ORTHO05D006681 1.6e-09 69.7 61 54.1
Lsat_1_v5_gn_5_181001 Lactuca sativa HOM05D005112 ORTHO05D006681 2.2e-06 59.3 90 36.7


User provided reference genes

Program Settings