Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G024000 Prunus persica HOM05D002214 ORTHO05D007367 5.8e-258 893.6 434 100.0
MD07G1023200 Malus domestica HOM05D002214 ORTHO05D007367 8.8e-198 693.7 432 78.0
RcHm_v2.0_Chr1g0318361 Rosa chinensis HOM05D002214 ORTHO05D007367 4.5e-178 628.2 431 71.9
FAN03G2729 Fragaria x ananassa HOM05D002214 ORTHO05D007367 2.3e-174 615.9 439 68.3
FAN10G2270 Fragaria x ananassa HOM05D002214 ORTHO05D007367 4.0e-174 615.1 437 68.9
CiPaw.14G003400 Carya illinoinensis HOM05D002214 ORTHO05D007367 3.2e-163 578.9 428 65.7
TWI09G0406 Tripterygium wilfordii HOM05D002214 ORTHO05D007367 4.7e-159 565.1 428 64.7
Cfa010812 Carpinus fangiana HOM05D002214 ORTHO05D007367 6.8e-158 561.2 429 63.2
CANSAT80G0536 Cannabis sativa HOM05D002214 ORTHO05D007367 7.5e-157 557.8 434 64.5
Ciclev10031605m.g Citrus clementina HOM05D002214 ORTHO05D007367 3.2e-155 552.4 421 65.8
GSVIVG01032215001 Vitis vinifera HOM05D002214 ORTHO05D007367 1.0e-153 547.4 434 62.2
Duzib138G1340 Durio zibethinus HOM05D002214 ORTHO05D007367 3.9e-153 545.4 422 64.9
Actinidia19424 Actinidia chinensis HOM05D002214 ORTHO05D007367 1.5e-152 543.5 434 62.4
Rhsim07G0058900 Rhododendron simsii HOM05D002214 ORTHO05D007367 4.3e-152 542.0 434 62.9
Gorai.004G170100 Gossypium raimondii HOM05D002214 ORTHO05D007367 7.3e-152 541.2 433 62.4
Gohir.A08G142300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 2.8e-151 539.3 432 62.5
Potri.009G056500 Populus trichocarpa HOM05D002214 ORTHO05D007367 1.1e-150 537.3 426 63.1
Manes.07G010800 Manihot esculenta HOM05D002214 ORTHO05D007367 5.8e-149 531.6 417 64.7
Hma1.2p1_0685F.1_g203260 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 3.8e-148 528.9 426 59.4
Thecc.01G406200 Theobroma cacao HOM05D002214 ORTHO05D007367 3.0e-145 519.2 431 62.4
Sc11g0009040 Simmondsia chinensis HOM05D002214 ORTHO05D007367 3.6e-143 512.3 433 57.7
Eucgr.G03301 Eucalyptus grandis HOM05D002214 ORTHO05D007367 6.2e-143 511.5 428 58.9
Eucgr.G03320 Eucalyptus grandis HOM05D002214 ORTHO05D007367 9.0e-142 507.7 409 60.9
vmacro13697 Vaccinium macrocarpon HOM05D002214 ORTHO05D007367 4.9e-140 501.9 489 56.2
Sed0008197 Sechium edule HOM05D002214 ORTHO05D007367 1.9e-139 500.0 426 58.7
QL04p010195 Quercus lobata HOM05D002214 ORTHO05D007367 8.7e-137 491.1 437 58.4
Ca_24837_v3 Cicer arietinum L. HOM05D002214 ORTHO05D007367 1.1e-136 490.7 419 58.7
Medtr3g034210 Medicago truncatula HOM05D002214 ORTHO05D007367 1.5e-136 490.3 413 59.1
Lalb_Chr25g0282551 Lupinus albus HOM05D002214 ORTHO05D007367 5.6e-136 488.4 429 58.3
Nn7g36334 Nelumbo nucifera HOM05D002214 ORTHO05D007367 4.8e-135 485.3 413 58.8
Psat5g212440 Pisum sativum HOM05D002214 ORTHO05D007367 4.0e-134 482.3 420 56.9
CsaV3_7G030710 Cucumis sativus L. HOM05D002214 ORTHO05D007367 2.0e-133 479.9 427 56.7
CAN.G909.6 Capsicum annuum HOM05D002214 ORTHO05D007367 1.7e-132 476.9 438 57.3
AUR62023095 Chenopodium quinoa HOM05D002214 ORTHO05D007367 1.7e-132 476.9 426 55.2
Glyma.11G159230 Glycine max HOM05D002214 ORTHO05D007367 1.7e-132 476.9 413 57.1
THA.LOC104817574 Tarenaya hassleriana HOM05D002214 ORTHO05D007367 1.7e-132 476.9 435 56.3
TPR.G14558 Trifolium pratense HOM05D002214 ORTHO05D007367 4.9e-132 475.3 430 55.6
Sopen01g034840 Solanum pennellii HOM05D002214 ORTHO05D007367 1.4e-131 473.8 417 57.6
Aqoxy2G00221 Aquilegia oxysepala HOM05D002214 ORTHO05D007367 3.2e-131 472.6 420 56.4
CARHR161660 Cardamine hirsuta HOM05D002214 ORTHO05D007367 1.6e-130 470.3 422 56.4
BcaC06g33020 Brassica carinata HOM05D002214 ORTHO05D007367 2.1e-130 469.9 424 56.1
Solyc01g087910.4 Solanum lycopersicum HOM05D002214 ORTHO05D007367 3.5e-130 469.2 417 56.8
Lj3g0007976 Lotus japonicus HOM05D002214 ORTHO05D007367 6.0e-130 468.4 423 56.0
Phvul.005G035100 Phaseolus vulgaris HOM05D002214 ORTHO05D007367 6.0e-130 468.4 420 55.2
arahy.Tifrunner.gnm1.ann1.IP56PK Arachis hypogaea HOM05D002214 ORTHO05D007367 1.0e-129 467.6 420 56.7
VMungo1217G0001 Vigna mungo HOM05D002214 ORTHO05D007367 1.0e-129 467.6 418 54.5
A03p48610 Brassica napus HOM05D002214 ORTHO05D007367 1.3e-129 467.2 424 56.1
arahy.Tifrunner.gnm1.ann1.KRTV89 Arachis hypogaea HOM05D002214 ORTHO05D007367 5.1e-129 465.3 420 56.4
C07p46730 Brassica napus HOM05D002214 ORTHO05D007367 5.1e-129 465.3 424 55.7
Sp5g10260 Schrenkiella parvula HOM05D002214 ORTHO05D007367 6.7e-129 464.9 420 56.7
TAR633G1256 Trochodendron aralioides HOM05D002214 ORTHO05D007367 1.5e-128 463.8 379 60.9
BcaC06g33377 Brassica carinata HOM05D002214 ORTHO05D007367 4.3e-128 462.2 424 55.2
AT3G52030 Arabidopsis thaliana HOM05D002214 ORTHO05D007367 9.6e-128 461.1 428 54.7
Atru.chr11.2515 Acer truncatum HOM05D002214 ORTHO05D007367 2.1e-127 459.9 423 55.8
Thhalv10010397m.g Eutrema salsugineum HOM05D002214 ORTHO05D007367 2.1e-127 459.9 424 55.0
SGA_v2.0_scaffold5G02954 Striga asiatica HOM05D002214 ORTHO05D007367 2.8e-127 459.5 433 53.1
FvH4_7g01770 Fragaria vesca HOM05D002214 ORTHO05D007367 6.2e-127 458.4 309 70.9
CSS0000146 Camellia sinensis var. sinensis HOM05D002214 ORTHO05D007367 3.1e-126 456.1 436 54.8
BolC7t45191H Brassica oleracea HOM05D002214 ORTHO05D007367 1.7e-124 450.3 441 53.1
Carub.0005s1835 Capsella rubella HOM05D002214 ORTHO05D007367 3.8e-124 449.1 428 53.7
Migut.N01800 Erythranthe guttata HOM05D002214 ORTHO05D007367 8.4e-124 448.0 441 53.3
Gohir.D08G163300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 1.9e-123 446.8 308 68.5
AL5G32570 Arabidopsis lyrata HOM05D002214 ORTHO05D007367 5.5e-123 445.3 449 51.9
PGR031G3638 Punica granatum HOM05D002214 ORTHO05D007367 7.9e-122 441.4 464 49.8
Cc02_g28820 Coffea canephora HOM05D002214 ORTHO05D007367 2.5e-120 436.4 528 43.6
DCAR_022375 Daucus carota HOM05D002214 ORTHO05D007367 2.5e-120 436.4 426 51.9
PSO339G3363 Papaver somniferum HOM05D002214 ORTHO05D007367 3.1e-118 429.5 433 52.0
PSO384G3385 Papaver somniferum HOM05D002214 ORTHO05D007367 1.5e-117 427.2 436 51.4
BraA03t13966Z Brassica rapa HOM05D002214 ORTHO05D007367 3.4e-117 426.0 423 53.4
Nitab4.5_0001244g0060 Nicotiana tabacum HOM05D002214 ORTHO05D007367 8.4e-116 421.4 417 54.2
Peaxi162Scf01270g00126 Petunia axillaris HOM05D002214 ORTHO05D007367 1.0e-113 414.5 447 51.0
Lsat_1_v5_gn_7_35840 Lactuca sativa HOM05D002214 ORTHO05D007367 6.7e-113 411.8 437 48.1
Ah.16g100650 Amaranthus hybridus HOM05D002214 ORTHO05D007367 5.7e-112 408.7 372 53.2
ECA236G0637 Erigeron canadensis HOM05D002214 ORTHO05D001664 2.4e-110 403.3 400 50.8
ClCG09G004430 Citrullus lanatus HOM05D002214 ORTHO05D007367 3.1e-110 402.9 382 55.0
unitig_22.g5896 Utricularia gibba HOM05D002214 ORTHO05D007367 6.5e-108 395.2 422 48.3
ATR0782G063 Amborella trichopoda HOM05D002214 ORTHO05D007367 2.7e-106 389.8 418 50.5
QL04p010150 Quercus lobata HOM05D002214 ORTHO05D007367 3.9e-105 386.0 350 57.4
FAN24G1013 Fragaria x ananassa HOM05D002214 ORTHO05D007367 3.3e-104 382.9 457 50.3
FvH4_2g17890 Fragaria vesca HOM05D002214 ORTHO05D007367 1.3e-103 380.9 457 50.1
Dinv07431 Davidia involucrata HOM05D002214 ORTHO05D005113 6.3e-103 378.6 308 60.7
HPP92_021380 Vanilla planifolia HOM05D002214 ORTHO05D007367 1.1e-102 377.9 426 47.9
MBI03_g28525_MAGBIO Magnolia biondii HOM05D002214 ORTHO05D007367 3.2e-99 366.3 429 47.6
Zm00001eb091260 Zea mays HOM05D002214 ORTHO05D007367 7.2e-99 365.2 413 46.0
FAN15G3441 Fragaria x ananassa HOM05D002214 ORTHO05D007367 9.4e-99 364.8 459 48.4
EL10Ac2g04369 Beta vulgaris HOM05D002214 ORTHO05D007367 1.4e-97 360.9 416 47.4
Nitab4.5_0008942g0050 Nicotiana tabacum HOM05D002214 ORTHO05D007367 3.0e-97 359.8 422 49.5
Os11g0182400 Oryza sativa ssp. japonica HOM05D002214 ORTHO05D007367 3.9e-97 359.4 411 44.8
FAN24G2408 Fragaria x ananassa HOM05D002214 ORTHO05D007367 5.1e-97 359.0 455 47.9
FAN06G2164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 4.8e-95 352.4 268 64.6
Oeu051405.1 Olea europaea HOM05D002214 ORTHO05D007367 2.6e-93 346.7 317 52.7
FAN27G1816 Fragaria x ananassa HOM05D002214 ORTHO05D007367 9.4e-91 338.2 453 46.1
QL04p010068 Quercus lobata HOM05D002214 ORTHO05D007367 4.5e-85 319.3 248 62.5
Haze_03152 Corylus avellana HOM05D002214 ORTHO05D007367 3.2e-83 313.2 419 44.2
Haze_03149 Corylus avellana HOM05D002214 ORTHO05D007367 1.6e-82 310.8 419 43.9
FAN27G1164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 2.8e-79 300.1 415 46.7
AUR62009418 Chenopodium quinoa HOM05D002214 ORTHO05D007367 3.7e-79 299.7 407 41.0
HanXRQChr04g0119861 Helianthus annuus HOM05D002214 ORTHO05D007367 4.8e-79 299.3 268 52.6
MELO3C023585.2 Cucumis melo HOM05D002214 ORTHO05D007367 2.4e-78 297.0 426 42.5
SalBow6G2835 Salvia bowleyana HOM05D002214 ORTHO05D007367 9.4e-75 285.0 299 50.8
RcHm_v2.0_Chr6g0283161 Rosa chinensis HOM05D002214 ORTHO05D007367 4.1e-70 269.6 336 50.9
MD07G1016900 Malus domestica HOM05D002214 ORTHO05D007367 1.6e-69 267.7 220 65.0
QL04p010120 Quercus lobata HOM05D002214 ORTHO05D007367 1.5e-59 234.6 206 59.7
Cpa.g.sc125.50 Carica papaya HOM05D002214 ORTHO05D007367 1.0e-57 228.4 196 58.7
Aa31LG10G14890 Aethionema arabicum HOM05D002214 ORTHO05D007367 5.2e-57 226.1 237 49.4
Cpa.g.sc125.51 Carica papaya HOM05D002214 ORTHO05D007367 5.2e-57 226.1 246 51.2
AagrBONN_evm.TU.Sc2ySwM_344.2511 Anthoceros agrestis HOM05D002214 ORTHO05D007367 4.7e-50 203.0 449 30.5
COL.COLO4_12334 Corchorus olitorius HOM05D000031 ORTHO05D000030 1.1e-49 201.8 336 37.2
Lj9A641T67 Lonicera japonica HOM05D002214 ORTHO05D007367 5.4e-46 189.5 284 37.3
FvH4_2g17910 Fragaria vesca HOM05D002214 ORTHO05D007367 9.2e-46 188.7 231 49.4
FAN24G3278 Fragaria x ananassa HOM05D002214 ORTHO05D007367 9.2e-46 188.7 231 49.4
Hma1.2p1_0685F.1_g203270 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 1.2e-45 188.3 150 60.0
CDE04G0429 Ceratophyllum demersum HOM05D002214 ORTHO05D007367 5.6e-43 179.5 190 49.5
Pp3c8_19810 Physcomitrium patens HOM05D002214 ORTHO05D007367 1.8e-41 174.5 423 26.2
Hund16632 Selenicereus undatus HOM05D002214 ORTHO05D007367 2.2e-39 167.5 160 54.4
FAN06G4994 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.2e-37 161.8 135 62.2
Hund16633 Selenicereus undatus HOM05D002214 ORTHO05D007367 5.1e-36 156.4 149 50.3
SMO137G0282 Selaginella moellendorffii HOM05D002214 ORTHO05D007367 1.5e-32 144.8 365 31.0
CBR_g46897 Chara braunii HOM05D002214 ORTHO05D007367 1.7e-31 141.4 378 28.6
SEGI_30351 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 1.7e-31 141.4 144 45.8
Thecc.01G405700 Theobroma cacao HOM05D002214 ORTHO05D007367 1.9e-27 127.9 109 56.0
Thecc.01G405800 Theobroma cacao HOM05D002214 ORTHO05D007367 1.6e-26 124.8 82 72.0
Aa31LG10G14900 Aethionema arabicum HOM05D002214 ORTHO05D007367 3.6e-26 123.6 122 51.6
Oeu016638.1 Olea europaea HOM05D002214 ORTHO05D007367 1.4e-22 111.7 102 53.9
Mapoly0009s0234 Marchantia polymorpha HOM05D002214 ORTHO05D007367 2.1e-21 107.8 298 29.5
Hma1.2p1_0685F.1_g203250 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 1.7e-20 104.8 114 46.5
SEGI_07097 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 3.9e-20 103.6 139 42.4
Duzib133G0745 Durio zibethinus HOM05D002214 ORTHO05D007367 3.3e-19 100.5 67 67.2
FAN24G0587 Fragaria x ananassa HOM05D002214 ORTHO05D045595 1.3e-15 88.6 89 58.4
FAN27G0150 Fragaria x ananassa HOM05D002214 ORTHO05D007367 2.9e-15 87.4 146 38.4
Lj9C641T18 Lonicera japonica HOM05D002214 ORTHO05D007367 7.9e-13 79.3 97 49.5
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 3.4e-08 63.9 138 28.3
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 1.0e-07 62.4 138 27.5
FvH4_2g17920 Fragaria vesca HOM05D002214 ORTHO05D045595 6.5e-07 59.7 60 48.3
FAN27G0866 Fragaria x ananassa HOM05D002214 ORTHO05D007367 8.4e-07 59.3 78 44.9


User provided reference genes

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