Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G013700 Prunus persica HOM05D005833 ORTHO05D008135 0.0e+00 1548.1 773 100.0
MD08G1002500 Malus domestica HOM05D005833 ORTHO05D008135 0.0e+00 1331.6 773 85.6
RcHm_v2.0_Chr6g0270441 Rosa chinensis HOM05D005833 ORTHO05D008135 0.0e+00 1163.3 773 75.2
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 0.0e+00 1160.2 771 74.3
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 0.0e+00 1138.6 773 72.8
RcHm_v2.0_Chr6g0304231 Rosa chinensis HOM05D005833 ORTHO05D008135 0.0e+00 1100.5 773 72.3
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 1.7e-308 1062.4 770 69.1
FvH4_2g37510 Fragaria vesca HOM05D005833 ORTHO05D008135 1.5e-304 1049.3 775 69.0
FAN27G2717 Fragaria x ananassa HOM05D005833 ORTHO05D008135 2.6e-301 1038.5 761 69.4
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 6.4e-300 1033.9 771 66.8
Dinv31936 Davidia involucrata HOM05D005833 ORTHO05D008135 1.5e-296 1022.7 775 67.7
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 4.0e-294 1014.6 773 66.0
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 1.3e-292 1009.6 717 70.2
Gohir.A01G106200 Gossypium hirsutum HOM05D005833 ORTHO05D008135 1.1e-291 1006.5 770 64.9
FAN15G1206 Fragaria x ananassa HOM05D005833 ORTHO05D008135 2.3e-289 998.8 773 66.8
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 1.6e-287 992.6 768 66.1
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 5.6e-280 967.6 767 64.1
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 1.8e-278 962.6 814 61.7
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 2.9e-276 955.3 774 63.2
CANSAT56G4366 Cannabis sativa HOM05D005833 ORTHO05D008135 9.3e-275 950.3 770 64.2
Ciclev10004328m.g Citrus clementina HOM05D005833 ORTHO05D008135 1.8e-273 946.0 773 63.0
Gorai.002G118000 Gossypium raimondii HOM05D005833 ORTHO05D008135 3.0e-273 945.3 770 62.2
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 1.1e-270 936.8 772 62.2
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 1.3e-268 929.9 772 62.2
Potri.001G047200 Populus trichocarpa HOM05D005833 ORTHO05D008135 1.3e-268 929.9 806 59.6
Rhsim06G0007700 Rhododendron simsii HOM05D005833 ORTHO05D008135 6.5e-268 927.5 773 62.0
CsaV3_7G024400 Cucumis sativus L. HOM05D005833 ORTHO05D008135 6.3e-263 911.0 766 60.3
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 3.1e-262 908.7 773 61.1
vmacro21814 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 3.4e-261 905.2 772 60.4
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 2.5e-259 899.0 767 60.1
Ca_25244_v3 Cicer arietinum L. HOM05D005833 ORTHO05D008135 1.8e-257 892.9 769 57.9
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 1.8e-257 892.9 842 55.7
Lalb_Chr19g0131751 Lupinus albus HOM05D005833 ORTHO05D008135 3.0e-257 892.1 779 59.2
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 4.3e-256 888.3 772 58.9
ClCG09G010280 Citrullus lanatus HOM05D005833 ORTHO05D008135 1.7e-255 886.3 765 59.2
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 2.4e-254 882.5 767 58.8
Sp5g31420 Schrenkiella parvula HOM05D005833 ORTHO05D008135 3.4e-253 878.6 767 58.4
FAN20G1756 Fragaria x ananassa HOM05D005833 ORTHO05D008135 2.2e-252 875.9 644 70.0
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 6.5e-252 874.4 770 57.3
Medtr6g069480 Medicago truncatula HOM05D005833 ORTHO05D008135 1.1e-251 873.6 777 56.6
Psat6g000360 Pisum sativum HOM05D005833 ORTHO05D008135 4.2e-251 871.7 770 57.4
VMungo0647G1167 Vigna mungo HOM05D005833 ORTHO05D008135 7.9e-250 867.5 761 59.0
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 1.1e-248 863.6 769 57.6
CAN.G311.113 Capsicum annuum HOM05D005833 ORTHO05D008135 4.8e-247 858.2 763 58.5
MBI15_g24990_MAGBIO Magnolia biondii HOM05D005833 ORTHO05D008135 4.8e-247 858.2 883 54.2
Sopen04g035940 Solanum pennellii HOM05D005833 ORTHO05D008135 1.1e-246 857.1 769 57.6
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 9.1e-246 854.0 767 57.4
C06p50250 Brassica napus HOM05D005833 ORTHO05D008135 1.2e-245 853.6 769 58.0
Thhalv10018138m.g Eutrema salsugineum HOM05D005833 ORTHO05D008135 1.2e-245 853.6 767 57.5
A07p41850 Brassica napus HOM05D005833 ORTHO05D008135 2.0e-245 852.8 769 57.7
Hma1.2p1_1100F.1_g257060 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 2.0e-245 852.8 768 58.3
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 3.4e-245 852.0 769 57.1
BraA07t31715Z Brassica rapa HOM05D005833 ORTHO05D008135 7.7e-245 850.9 772 57.8
BolC6t40064H Brassica oleracea HOM05D005833 ORTHO05D008135 1.0e-244 850.5 769 57.6
Lj2g0014489 Lotus japonicus HOM05D005833 ORTHO05D008135 1.4e-243 846.7 788 56.3
Manes.01G079700 Manihot esculenta HOM05D005833 ORTHO05D008135 2.5e-243 845.9 767 58.1
THA.LOC104813754 Tarenaya hassleriana HOM05D005833 ORTHO05D008135 4.4e-240 835.1 767 57.5
arahy.Tifrunner.gnm1.ann1.5KXZ1H Arachis hypogaea HOM05D005833 ORTHO05D008135 9.1e-238 827.4 766 56.1
arahy.Tifrunner.gnm1.ann1.JP3Y8V Arachis hypogaea HOM05D005833 ORTHO05D008135 9.1e-238 827.4 766 56.1
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 1.2e-237 827.0 761 55.3
SHI22388 Sapria himalayana HOM05D005833 ORTHO05D008135 6.1e-234 814.7 767 55.8
Lj8C590T1 Lonicera japonica HOM05D005833 ORTHO05D008135 5.5e-227 791.6 738 56.5
EL10Ac1g01971 Beta vulgaris HOM05D005833 ORTHO05D008135 4.0e-225 785.4 760 53.4
Hma1.2p1_1100F.1_g257040 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 3.4e-224 782.3 652 62.4
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 1.1e-222 777.3 722 55.8
Lsat_1_v5_gn_2_5021 Lactuca sativa HOM05D005833 ORTHO05D008135 2.0e-221 773.1 763 53.1
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 7.7e-221 771.2 813 51.4
HanXRQChr14g0428311 Helianthus annuus HOM05D005833 ORTHO05D008135 7.7e-221 771.2 768 53.1
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 8.6e-220 767.7 761 54.0
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 8.6e-220 767.7 846 50.7
MSTRG.22056 Avicennia marina HOM05D005833 ORTHO05D008135 1.0e-217 760.8 768 52.9
Cc01_g04490 Coffea canephora HOM05D005833 ORTHO05D008135 1.4e-217 760.4 768 53.3
Migut.N03019 Erythranthe guttata HOM05D005833 ORTHO05D008135 8.9e-217 757.7 767 52.7
ECA238G3879 Erigeron canadensis HOM05D005833 ORTHO05D008135 1.5e-216 756.9 740 53.5
Glyma.14G223300 Glycine max HOM05D005833 ORTHO05D008135 4.4e-216 755.4 768 52.7
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 5.4e-214 748.4 761 52.7
ATR0691G240 Amborella trichopoda HOM05D005833 ORTHO05D008135 7.0e-206 721.5 838 49.2
PSO541G2949 Papaver somniferum HOM05D005833 ORTHO05D008135 1.3e-204 717.2 805 49.8
Sed0015348 Sechium edule HOM05D005833 ORTHO05D008135 3.9e-204 715.7 599 61.1
Gohir.D01G092700 Gossypium hirsutum HOM05D005833 ORTHO05D008135 5.6e-203 711.8 535 66.5
Aqoxy6G01299 Aquilegia oxysepala HOM05D005833 ORTHO05D008135 1.1e-201 707.6 807 50.3
CARHR069840 Cardamine hirsuta HOM05D005833 ORTHO05D008135 1.9e-198 696.8 618 58.3
SGA_v2.0_scaffold225G43066 Striga asiatica HOM05D005833 ORTHO05D008135 3.5e-197 692.6 772 48.7
BcaNung02801 Brassica carinata HOM05D005833 ORTHO05D008135 7.8e-197 691.4 751 51.0
BcaC08g47270 Brassica carinata HOM05D005833 ORTHO05D008135 1.7e-196 690.3 642 57.5
Zm00001eb315840 Zea mays HOM05D005833 ORTHO05D008135 1.7e-196 690.3 781 47.0
HPP92_008490 Vanilla planifolia HOM05D005833 ORTHO05D008135 7.5e-192 674.9 833 44.5
Eucgr.F01756 Eucalyptus grandis HOM05D005833 ORTHO05D008135 6.4e-191 671.8 634 56.2
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 1.2e-189 667.5 600 57.2
PSO675G2737 Papaver somniferum HOM05D005833 ORTHO05D008135 5.1e-188 662.1 805 47.1
PGR083G0966 Punica granatum HOM05D005833 ORTHO05D008135 1.2e-184 651.0 766 47.3
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 1.5e-168 597.4 601 50.9
SalBow6G3625 Salvia bowleyana HOM05D005833 ORTHO05D008135 1.7e-151 540.8 532 52.8
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 2.3e-148 530.4 792 38.5
AUR62036881 Chenopodium quinoa HOM05D005833 ORTHO05D008135 2.9e-135 486.9 531 48.8
BcaC09g51226 Brassica carinata HOM05D005833 ORTHO05D008135 2.0e-131 474.2 653 44.3
unitig_699.g19597 Utricularia gibba HOM05D005833 ORTHO05D008135 1.7e-127 461.1 620 43.4
BcaC08g47127 Brassica carinata HOM05D005833 ORTHO05D008135 3.3e-123 446.8 430 55.3
TPR.G8628 Trifolium pratense HOM05D005833 ORTHO05D008135 3.3e-123 446.8 357 62.2
BcaC08g47126 Brassica carinata HOM05D005833 ORTHO05D008135 3.1e-84 317.4 253 61.7
TPR.G8631 Trifolium pratense HOM05D005833 ORTHO05D008135 1.2e-80 305.4 336 49.7
COL.COLO4_04005 Corchorus olitorius HOM05D005833 ORTHO05D008135 3.5e-80 303.9 548 37.8
CAN.G643.17 Capsicum annuum HOM05D005833 ORTHO05D008135 5.1e-71 273.5 373 44.0
Glyma.14G222150 Glycine max HOM05D005833 ORTHO05D008135 7.3e-62 243.0 196 61.2
Lj8P589T22 Lonicera japonica HOM05D005833 ORTHO05D008135 3.6e-53 214.2 172 62.2
SMO230G0024 Selaginella moellendorffii HOM05D005833 ORTHO05D008135 5.3e-44 183.7 555 26.5
Medtr1g026480 Medicago truncatula HOM05D005833 ORTHO05D008135 3.8e-42 177.6 155 56.8
Nitab4.5_0000198g0010 Nicotiana tabacum HOM05D005833 ORTHO05D008135 1.4e-41 175.6 165 55.2
Oeu011332.1 Olea europaea HOM05D005833 ORTHO05D008135 1.4e-41 175.6 146 61.0
Oeu011333.1 Olea europaea HOM05D005833 ORTHO05D008135 1.4e-41 175.6 146 61.0
Mapoly0009s0070 Marchantia polymorpha HOM05D005833 ORTHO05D008135 1.9e-41 175.3 594 25.9
CBR_g11913 Chara braunii HOM05D005833 ORTHO05D008135 2.3e-39 168.3 623 24.2
Pp3c11_2930 Physcomitrium patens HOM05D005833 ORTHO05D008135 6.7e-39 166.8 736 25.0
AagrBONN_evm.TU.Sc2ySwM_117.1478 Anthoceros agrestis HOM05D005833 ORTHO05D008135 2.1e-37 161.8 470 28.9
Medtr1g026340 Medicago truncatula HOM05D005833 ORTHO05D008135 5.3e-36 157.1 145 52.4
Medtr1g026460 Medicago truncatula HOM05D005833 ORTHO05D008135 5.3e-36 157.1 145 52.4
BcaC08g47271 Brassica carinata HOM05D005833 ORTHO05D008135 5.1e-31 140.6 117 54.7
DCAR_009530 Daucus carota HOM05D005833 ORTHO05D008135 3.3e-30 137.9 121 56.2
Lj5g0006874 Lotus japonicus HOM05D005833 ORTHO05D008135 5.5e-25 120.6 86 62.8
TPR.G8633 Trifolium pratense HOM05D005833 ORTHO05D008135 2.8e-21 108.2 86 58.1
BcaC09g51225 Brassica carinata HOM05D005833 ORTHO05D008135 1.0e-15 89.7 66 57.6
BcaB05g24986 Brassica carinata HOM05D005833 ORTHO05D008135 7.4e-14 83.6 71 63.4
CAN.G772.6 Capsicum annuum HOM05D005833 ORTHO05D008135 9.7e-14 83.2 82 48.8
vmacro21815 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 2.0e-11 75.5 75 52.0
PGR031G2661 Punica granatum HOM05D002453 ORTHO05D008746 5.5e-09 67.4 129 31.0
AagrBONN_evm.TU.Sc2ySwM_228.4318 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.3e-07 62.0 311 23.2
Ca_11448_v3 Cicer arietinum L. HOM05D000855 ORTHO05D008530 4.0e-07 61.2 382 19.4
arahy.Tifrunner.gnm1.ann1.3K1SXW Arachis hypogaea HOM05D000162 ORTHO05D000090 5.2e-07 60.8 190 24.2
Migut.F02017 Erythranthe guttata HOM05D000001 ORTHO05D000003 8.8e-07 60.1 259 23.9
Medtr7g082160 Medicago truncatula HOM05D008684 ORTHO05D010796 8.8e-07 60.1 184 25.0
AagrBONN_evm.TU.Sc2ySwM_117.1086 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.5e-06 59.3 383 21.1
AagrBONN_evm.TU.Sc2ySwM_344.3848 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.5e-06 59.3 401 19.5
TPR.G29077 Trifolium pratense HOM05D008684 ORTHO05D010796 1.5e-06 59.3 186 24.2
Lsat_1_v5_gn_4_134881 Lactuca sativa HOM05D005833 ORTHO05D011576 2.0e-06 58.9 89 34.8
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 2.6e-06 58.5 396 19.9
Lsat_1_v5_gn_0_21360 Lactuca sativa HOM05D001049 ORTHO05D015148 3.3e-06 58.2 54 46.3
Lsat_1_v5_gn_1_92720 Lactuca sativa HOM05D001336 ORTHO05D011576 3.3e-06 58.2 62 45.2
AagrBONN_evm.TU.Sc2ySwM_368.2725 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.7e-06 57.4 400 21.0
RcHm_v2.0_Chr1g0319391 Rosa chinensis HOM05D005973 ORTHO05D007285 5.7e-06 57.4 187 29.9
Sabra16G0092100 Salix brachista HOM05D000855 ORTHO05D008530 5.7e-06 57.4 383 20.9
TPR.G30250 Trifolium pratense HOM05D000855 ORTHO05D008530 5.7e-06 57.4 385 19.2
Cc07_g18980 Coffea canephora HOM05D000162 ORTHO05D000090 7.5e-06 57.0 99 33.3


User provided reference genes

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