Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G009900 Prunus persica HOM05D006280 ORTHO05D007876 2.5e-302 1041.6 619 100.0
MD02G1315100 Malus domestica HOM05D006280 ORTHO05D007876 2.0e-235 819.3 615 74.8
FAN03G0134 Fragaria x ananassa HOM05D006280 ORTHO05D007876 2.1e-176 623.2 616 61.9
RcHm_v2.0_Chr1g0314941 Rosa chinensis HOM05D006280 ORTHO05D007876 2.8e-173 612.8 618 66.8
MD07G1006900 Malus domestica HOM05D006280 ORTHO05D007876 1.8e-172 610.1 489 72.0
FvH4_7g00721 Fragaria vesca HOM05D006280 ORTHO05D007876 6.1e-160 568.5 616 58.0
FAN10G1835 Fragaria x ananassa HOM05D006280 ORTHO05D007876 1.4e-156 557.4 597 58.5
QL04p005292 Quercus lobata HOM05D006280 ORTHO05D007876 2.1e-152 543.5 643 58.5
FAN01G3121 Fragaria x ananassa HOM05D006280 ORTHO05D007876 1.1e-148 531.2 686 56.4
FAN06G1370 Fragaria x ananassa HOM05D006280 ORTHO05D007876 2.8e-144 516.5 557 58.3
Haze_03235 Corylus avellana HOM05D006280 ORTHO05D007876 3.1e-140 503.1 644 48.8
Thecc.01G413600 Theobroma cacao HOM05D006280 ORTHO05D007876 7.8e-139 498.4 643 48.2
CiPaw.13G003200 Carya illinoinensis HOM05D006280 ORTHO05D007876 2.9e-138 496.5 640 51.4
TWI09G0861 Tripterygium wilfordii HOM05D006280 ORTHO05D007876 3.0e-135 486.5 644 46.3
CSS0048133 Camellia sinensis var. sinensis HOM05D006280 ORTHO05D007876 3.7e-133 479.6 652 47.4
FAN01G1556 Fragaria x ananassa HOM05D006280 ORTHO05D007876 2.0e-131 473.8 373 73.5
Potri.001G269700 Populus trichocarpa HOM05D006280 ORTHO05D007876 2.3e-130 470.3 637 49.5
Duzib268G1473 Durio zibethinus HOM05D006280 ORTHO05D007876 1.1e-127 461.5 644 46.7
Gohir.D11G166400 Gossypium hirsutum HOM05D006280 ORTHO05D007876 2.0e-126 457.2 642 46.0
Lj9A629T105 Lonicera japonica HOM05D006280 ORTHO05D007876 3.4e-126 456.4 635 47.2
Gorai.007G177400 Gossypium raimondii HOM05D006280 ORTHO05D007876 4.4e-126 456.1 642 45.8
Gohir.A11G160200 Gossypium hirsutum HOM05D006280 ORTHO05D007876 7.5e-126 455.3 642 45.8
MELO3C023535.2 Cucumis melo HOM05D006280 ORTHO05D007876 7.0e-124 448.7 648 47.7
TWI73G0538 Tripterygium wilfordii HOM05D006280 ORTHO05D007876 1.6e-123 447.6 634 47.8
Ciclev10030953m.g Citrus clementina HOM05D006280 ORTHO05D007876 5.0e-122 442.6 621 48.5
Hma1.2p1_0280F.1_g112910 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 1.2e-120 438.0 664 50.9
GSVIVG01032060001 Vitis vinifera HOM05D006280 ORTHO05D007876 4.7e-120 436.0 606 48.7
Sed0005202 Sechium edule HOM05D006280 ORTHO05D007876 6.8e-119 432.2 658 50.9
CANSAT01G2414 Cannabis sativa HOM05D006280 ORTHO05D007876 5.8e-118 429.1 629 45.5
Nitab4.5_0003361g0010 Nicotiana tabacum HOM05D006280 ORTHO05D007876 2.9e-117 426.8 696 41.7
ClCG09G004310 Citrullus lanatus HOM05D006280 ORTHO05D007876 3.7e-117 426.4 699 50.8
CAN.G170.124 Capsicum annuum HOM05D006280 ORTHO05D007876 1.0e-114 418.3 697 40.9
Eucgr.J01260 Eucalyptus grandis HOM05D006280 ORTHO05D007876 1.3e-114 417.9 611 44.4
Migut.B01331 Erythranthe guttata HOM05D006280 ORTHO05D007876 3.0e-114 416.8 695 41.4
Peaxi162Scf00428g00816 Petunia axillaris HOM05D006280 ORTHO05D007876 5.1e-114 416.0 697 41.6
Actinidia20679 Actinidia chinensis HOM05D006280 ORTHO05D007876 6.6e-114 415.6 725 41.0
Sabra09G0047500 Salix brachista HOM05D006280 ORTHO05D007876 9.5e-113 411.8 609 44.8
Potri.009G064200 Populus trichocarpa HOM05D006280 ORTHO05D007876 2.1e-112 410.6 585 51.1
Nitab4.5_0001542g0030 Nicotiana tabacum HOM05D006280 ORTHO05D007876 8.1e-112 408.7 697 42.6
Sed0013445 Sechium edule HOM05D006280 ORTHO05D007876 3.1e-111 406.8 623 46.5
PGSC0003DMG400006815 Solanum tuberosum HOM05D006280 ORTHO05D007876 6.4e-109 399.1 694 39.5
Sopen01g033930 Solanum pennellii HOM05D006280 ORTHO05D007876 1.0e-106 391.7 702 39.0
Cpa.g.sc234.10 Carica papaya HOM05D006280 ORTHO05D007876 1.1e-105 388.3 616 43.7
Manes.10G146200 Manihot esculenta HOM05D006280 ORTHO05D007876 3.3e-105 386.7 643 46.8
Hund03633 Selenicereus undatus HOM05D006280 ORTHO05D007876 7.3e-105 385.6 639 39.9
Oeu039119.3 Olea europaea HOM05D006280 ORTHO05D007876 8.1e-104 382.1 707 47.8
SalBow7G2237 Salvia bowleyana HOM05D006280 ORTHO05D007876 1.2e-102 378.3 702 41.0
Sc14g0005130 Simmondsia chinensis HOM05D006280 ORTHO05D007876 2.0e-102 377.5 641 41.0
PGR044G1516 Punica granatum HOM05D006280 ORTHO05D007876 5.4e-100 369.4 619 41.4
Cc02_g27560 Coffea canephora HOM05D006280 ORTHO05D007876 2.1e-99 367.5 688 37.8
Lalb_Chr03g0033951 Lupinus albus HOM05D006280 ORTHO05D007876 2.1e-99 367.5 633 40.0
QL04p005267 Quercus lobata HOM05D006280 ORTHO05D007876 4.6e-99 366.3 565 51.3
MSTRG.20601 Avicennia marina HOM05D006280 ORTHO05D007876 2.5e-97 360.5 698 37.2
COL.COLO4_23913 Corchorus olitorius HOM05D006280 ORTHO05D008652 7.3e-97 359.0 593 41.8
SGA_v2.0_scaffold167G38459 Striga asiatica HOM05D006280 ORTHO05D007876 1.3e-96 358.2 694 37.5
Dinv09375 Davidia involucrata HOM05D006280 ORTHO05D007876 3.1e-95 353.6 311 59.5
EL10Ac6g13519 Beta vulgaris HOM05D006280 ORTHO05D007876 8.4e-93 345.5 685 36.6
Hma1.2p1_0845F.1_g227480 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 2.4e-92 344.0 527 51.4
Aa31LG10G7200 Aethionema arabicum HOM05D006280 ORTHO05D007876 2.1e-91 340.9 645 37.7
AUR62028915 Chenopodium quinoa HOM05D006280 ORTHO05D007876 2.3e-90 337.4 627 37.2
THA.LOC104802360 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 3.9e-90 336.7 653 38.3
THA.LOC104817627 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 3.9e-90 336.7 643 38.6
Lsat_1_v5_gn_4_46080 Lactuca sativa HOM05D006280 ORTHO05D007876 9.6e-89 332.0 625 37.8
Solyc01g086930.4 Solanum lycopersicum HOM05D006280 ORTHO05D007876 1.6e-88 331.3 632 37.5
CsaV3_7G031230 Cucumis sativus L. HOM05D006280 ORTHO05D007876 6.2e-88 329.3 544 50.9
SGA_v2.0_scaffold119G32715 Striga asiatica HOM05D006280 ORTHO05D007876 2.4e-87 327.4 666 36.8
MBI01_g40597_MAGBIO Magnolia biondii HOM05D006280 ORTHO05D007876 1.5e-86 324.7 623 37.6
Lj3g0014839 Lotus japonicus HOM05D006280 ORTHO05D007876 3.4e-86 323.6 670 37.6
AL5G32680 Arabidopsis lyrata HOM05D006280 ORTHO05D007876 4.5e-86 323.2 640 38.9
HanXRQChr16g0519571 Helianthus annuus HOM05D006280 ORTHO05D007876 5.8e-86 322.8 635 42.5
PSO447G0216 Papaver somniferum HOM05D006280 ORTHO05D007876 1.7e-85 321.2 611 37.3
AT3G52115 Arabidopsis thaliana HOM05D006280 ORTHO05D007876 4.9e-85 319.7 633 38.2
Carub.0005s1845 Capsella rubella HOM05D006280 ORTHO05D007876 1.1e-84 318.5 646 37.0
Ca_23874_v3 Cicer arietinum L. HOM05D006280 ORTHO05D007876 1.3e-82 311.6 634 38.0
TAR636G0096 Trochodendron aralioides HOM05D006280 ORTHO05D007876 1.8e-82 311.2 265 61.5
Psat4g148560 Pisum sativum HOM05D006280 ORTHO05D007876 5.6e-81 306.2 689 35.7
ECA234G4003 Erigeron canadensis HOM05D006280 ORTHO05D007876 7.4e-81 305.8 611 42.4
Aqoxy2G00116 Aquilegia oxysepala HOM05D006280 ORTHO05D007876 9.6e-81 305.4 616 35.6
Thhalv10010216m.g Eutrema salsugineum HOM05D006280 ORTHO05D007876 2.1e-80 304.3 626 43.9
TPR.G21742 Trifolium pratense HOM05D006280 ORTHO05D007876 2.1e-80 304.3 635 37.0
Sp5g10170 Schrenkiella parvula HOM05D006280 ORTHO05D007876 2.8e-80 303.9 632 39.1
AUR62005634 Chenopodium quinoa HOM05D006280 ORTHO05D007876 5.3e-79 299.7 568 36.8
VMungo1127G1733 Vigna mungo HOM05D006280 ORTHO05D007876 1.2e-78 298.5 619 36.8
PSO210G6454 Papaver somniferum HOM05D006280 ORTHO05D007876 1.5e-78 298.1 323 51.1
arahy.Tifrunner.gnm1.ann1.JHR7K6 Arachis hypogaea HOM05D006280 ORTHO05D007876 1.7e-77 294.7 662 34.9
CARHR161840 Cardamine hirsuta HOM05D006280 ORTHO05D007876 2.2e-77 294.3 625 43.4
Glyma.12G238500 Glycine max HOM05D006280 ORTHO05D007876 1.1e-73 282.0 352 48.3
BcaB02g08586 Brassica carinata HOM05D006280 ORTHO05D007876 7.4e-73 279.3 628 35.8
A04p07250 Brassica napus HOM05D006280 ORTHO05D007876 8.2e-72 275.8 613 44.2
BraA04t16420Z Brassica rapa HOM05D006280 ORTHO05D007876 1.1e-71 275.4 613 44.2
Nn2g15492 Nelumbo nucifera HOM05D006280 ORTHO05D007876 1.8e-71 274.6 694 37.8
BcaC02g09279 Brassica carinata HOM05D006280 ORTHO05D007876 3.1e-71 273.9 618 44.2
C04p40810 Brassica napus HOM05D006280 ORTHO05D007876 3.1e-71 273.9 618 44.2
BolC4t25665H Brassica oleracea HOM05D006280 ORTHO05D007876 3.1e-71 273.9 618 44.2
Medtr8g036940 Medicago truncatula HOM05D006280 ORTHO05D007876 6.9e-71 272.7 623 35.6
arahy.Tifrunner.gnm1.ann1.0Y513H Arachis hypogaea HOM05D006280 ORTHO05D007876 5.9e-70 269.6 626 37.4
Phvul.011G212200 Phaseolus vulgaris HOM05D006280 ORTHO05D007876 1.5e-65 255.0 606 35.0
Rhsim01G0130700 Rhododendron simsii HOM05D006280 ORTHO05D007876 1.7e-64 251.5 210 62.4
Os06g0613400 Oryza sativa ssp. japonica HOM05D006280 ORTHO05D007876 1.8e-63 248.1 654 33.2
Zm00001eb388310 Zea mays HOM05D006280 ORTHO05D007876 5.3e-63 246.5 648 31.9
Glyma.13G204200 Glycine max HOM05D006280 ORTHO05D007876 1.4e-58 231.9 260 52.3
CDE04G2764 Ceratophyllum demersum HOM05D006280 ORTHO05D007876 7.7e-54 216.1 184 57.1
Hma1.2p1_0312F.1_g121350 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 1.8e-50 204.9 201 57.2
ATR0824G264 Amborella trichopoda HOM05D006280 ORTHO05D007876 1.5e-49 201.8 665 31.1
Rhsim01G0130600 Rhododendron simsii HOM05D006280 ORTHO05D007876 5.3e-47 193.4 464 34.9
Dinv14267 Davidia involucrata HOM05D006280 ORTHO05D007876 1.2e-46 192.2 463 35.4
Dinv14268 Davidia involucrata HOM05D006280 ORTHO05D007876 1.2e-46 192.2 127 74.0
vmacro21179 Vaccinium macrocarpon HOM05D006280 ORTHO05D007876 4.2e-44 183.7 122 73.0
Dinv09374 Davidia involucrata HOM05D006280 ORTHO05D007876 4.5e-38 163.7 247 47.4
unitig_8.g3859 Utricularia gibba HOM05D006280 ORTHO05D007876 1.5e-36 158.7 540 29.8
vmacro21180 Vaccinium macrocarpon HOM05D006280 ORTHO05D007876 5.9e-30 136.7 393 32.3
SMO196G0201 Selaginella moellendorffii HOM05D006280 ORTHO05D007876 3.3e-28 131.0 325 34.2
SEGI_32119 Sequoiadendron giganteum HOM05D006280 ORTHO05D007876 8.0e-27 126.3 722 24.9
TAR636G3118 Trochodendron aralioides HOM05D006280 ORTHO05D007876 1.4e-26 125.6 199 45.2
QL04p005302 Quercus lobata HOM05D006280 ORTHO05D007876 2.3e-26 124.8 177 48.6
AagrBONN_evm.TU.Sc2ySwM_117.1753 Anthoceros agrestis HOM05D006280 ORTHO05D007876 3.5e-22 110.9 83 59.0
Mapoly0001s0083 Marchantia polymorpha HOM05D006280 ORTHO05D007876 4.5e-22 110.5 96 54.2
Pp3c16_2140 Physcomitrium patens HOM05D006280 ORTHO05D007876 3.3e-20 104.4 122 50.0
QL04p005379 Quercus lobata HOM05D000011 ORTHO05D007876 4.0e-18 97.4 183 39.3
Manes.07G004300 Manihot esculenta HOM05D006280 ORTHO05D007876 1.7e-16 92.0 143 43.4
unitig_8.g3860 Utricularia gibba HOM05D006280 ORTHO05D007876 2.9e-16 91.3 162 45.1
MSTRG.5009 Avicennia marina HOM05D006280 ORTHO05D007876 2.3e-10 71.6 369 25.7
MCO05G132 Micromonas commoda HOM05D006280 ORTHO05D007876 2.0e-09 68.6 90 41.1
DCAR_006240 Daucus carota HOM05D006280 ORTHO05D007876 2.9e-08 64.7 249 26.9
PSO210G6643 Papaver somniferum HOM05D006280 ORTHO05D007876 8.3e-08 63.2 132 40.9
CBR_g41780 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-07 62.0 56 55.4


User provided reference genes

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