Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 3.6e-236 821.2 427 100.0
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 1.3e-198 696.4 435 83.7
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 2.1e-196 689.1 477 78.6
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 9.0e-195 683.7 435 82.3
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 4.5e-194 681.4 435 82.1
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.5e-194 681.4 435 81.8
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.5e-194 681.4 435 82.1
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.9e-193 678.7 435 81.4
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.2e-192 674.9 435 81.8
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 1.9e-173 612.8 438 74.9
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 1.0e-166 590.5 440 73.2
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 2.5e-165 585.9 446 72.4
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 3.3e-165 585.5 442 71.3
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 9.7e-165 583.9 440 71.4
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 1.3e-164 583.6 441 69.8
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 1.1e-163 580.5 441 71.0
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 3.1e-163 578.9 441 69.4
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 1.2e-162 577.0 445 69.7
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.2e-162 577.0 436 71.1
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 1.5e-162 576.6 471 66.5
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 5.9e-162 574.7 490 65.3
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.7e-161 573.2 423 71.9
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.4e-160 570.1 441 70.3
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 5.5e-160 568.2 427 70.7
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 9.7e-157 557.4 456 66.9
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 9.7e-157 557.4 442 69.0
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 2.2e-156 556.2 441 67.8
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 1.4e-155 553.5 445 67.9
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 1.4e-155 553.5 445 67.6
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 5.3e-155 551.6 437 69.3
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 7.0e-155 551.2 451 66.7
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 1.5e-154 550.1 437 67.5
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 2.0e-154 549.7 441 66.7
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 3.4e-154 548.9 443 68.2
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 7.7e-154 547.7 443 67.9
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 7.7e-154 547.7 445 67.4
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 1.0e-153 547.4 445 67.4
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 3.8e-153 545.4 437 68.2
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 3.8e-153 545.4 445 67.9
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 5.0e-153 545.0 450 66.7
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 8.5e-153 544.3 430 68.1
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 8.5e-153 544.3 450 67.1
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 8.5e-153 544.3 438 67.1
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 4.2e-152 542.0 440 67.3
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.2e-152 542.0 445 68.1
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 5.5e-152 541.6 457 66.3
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 5.5e-152 541.6 447 65.3
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 4.7e-151 538.5 438 66.4
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 6.1e-151 538.1 447 65.8
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 8.0e-151 537.7 445 67.4
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 8.0e-151 537.7 443 65.2
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 1.0e-150 537.3 438 66.7
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 3.0e-150 535.8 437 66.1
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 1.1e-149 533.9 437 68.0
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 3.3e-149 532.3 442 66.5
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 4.4e-149 531.9 447 64.2
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 1.3e-148 530.4 427 66.7
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 4.8e-148 528.5 452 62.4
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 1.1e-147 527.3 449 64.1
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 1.8e-147 526.6 441 64.6
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 1.8e-147 526.6 438 67.4
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 5.3e-147 525.0 444 65.5
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 7.0e-147 524.6 448 65.4
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 9.1e-147 524.2 450 66.4
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 1.2e-146 523.9 435 66.7
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 1.2e-146 523.9 439 64.5
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 2.6e-146 522.7 433 67.7
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 1.0e-145 520.8 456 62.3
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 2.9e-145 519.2 449 65.7
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 3.8e-145 518.8 432 66.4
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 4.2e-144 515.4 456 65.1
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 1.0e-142 510.8 425 64.7
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 1.4e-142 510.4 452 61.1
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.4e-142 510.4 439 64.2
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.4e-142 510.4 439 64.2
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 3.0e-142 509.2 429 64.3
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 4.0e-142 508.8 452 61.1
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 4.0e-142 508.8 433 65.1
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 6.7e-142 508.1 435 65.3
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 9.7e-141 504.2 430 65.1
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.3e-140 503.8 440 62.5
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 2.4e-139 499.6 431 65.2
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 1.6e-138 496.9 430 65.8
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 3.5e-138 495.7 444 62.6
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 3.8e-137 492.3 495 56.2
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 6.5e-137 491.5 473 58.1
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 1.2e-135 487.3 442 62.2
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.4e-134 483.8 437 62.2
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 2.6e-133 479.6 444 59.7
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 7.5e-133 478.0 457 60.0
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 1.3e-132 477.2 457 59.7
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 1.7e-132 476.9 301 85.7
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 2.2e-132 476.5 456 59.6
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 1.1e-131 474.2 456 59.9
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 2.4e-131 473.0 436 62.2
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 2.0e-130 469.9 455 58.9
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 1.9e-128 463.4 464 58.2
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 4.2e-128 462.2 429 62.0
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 7.2e-128 461.5 438 59.8
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 2.3e-126 456.4 427 61.8
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 8.9e-126 454.5 429 58.7
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 1.7e-124 450.3 445 59.8
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 4.1e-123 445.7 445 59.3
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 2.7e-122 443.0 427 60.4
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.1e-120 437.6 443 55.1
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 3.7e-116 422.5 437 57.2
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 1.1e-115 421.0 381 61.4
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 3.3e-112 409.5 438 54.6
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 4.3e-112 409.1 446 57.4
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 4.0e-110 402.5 367 59.9
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 9.8e-109 397.9 433 56.4
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 4.1e-107 392.5 311 66.2
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 3.9e-105 386.0 471 51.4
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 1.5e-104 384.0 436 54.6
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 2.8e-103 379.8 428 55.1
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 1.5e-101 374.0 376 59.3
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.0e-101 373.6 368 59.8
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 9.2e-99 364.8 424 54.0
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 2.1e-95 353.6 314 61.8
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 1.9e-91 340.5 439 49.2
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 3.5e-90 336.3 476 47.1
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 3.6e-87 326.2 514 43.8
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 9.3e-83 311.6 311 56.6
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 4.6e-82 309.3 214 77.1
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 9.9e-77 291.6 439 46.5
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 8.4e-76 288.5 439 46.5
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 5.8e-69 265.8 169 76.9
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.3e-65 254.6 352 47.7
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 7.4e-56 222.2 263 50.2
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 7.4e-56 222.2 263 50.2
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 2.8e-55 220.3 339 42.5
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.4e-54 217.2 138 78.3
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.8e-44 183.3 181 57.5
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 1.8e-38 164.5 322 40.1
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 2.1e-34 151.0 109 67.9
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 3.6e-34 150.2 128 57.0
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 3.0e-33 147.1 74 91.9
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.4e-32 143.3 92 79.3
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 1.3e-31 141.7 181 50.3
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 2.8e-31 140.6 134 55.2
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 2.8e-31 140.6 134 55.2
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 4.8e-31 139.8 84 82.1
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 7.7e-29 132.5 69 89.9
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 1.7e-28 131.3 137 56.2
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 5.5e-27 126.3 121 57.0
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 7.2e-27 125.9 243 41.2
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 4.7e-26 123.2 68 83.8
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 1.0e-25 122.1 93 66.7
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 1.8e-17 94.7 520 25.8
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 4.1e-14 83.6 91 52.7
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 1.7e-12 78.2 62 66.1
VMungo0720G2622 Vigna mungo HOM05D008589 ORTHO05D010715 5.0e-12 76.6 69 60.9
Os09g0281600 Oryza sativa ssp. japonica HOM05D004785 ORTHO05D005704 2.5e-11 74.3 131 43.5
Cre02.g105287 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D008521 9.2e-06 55.8 69 43.5


User provided reference genes

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