Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 5.5e-289 996.9 488 100.0
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 1.2e-259 899.4 488 90.2
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 1.1e-252 876.3 488 88.1
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 2.9e-221 771.9 501 76.4
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 3.0e-218 761.9 489 75.5
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 3.3e-217 758.4 500 75.2
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 1.3e-210 736.5 494 74.7
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 3.9e-210 734.9 489 74.6
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 1.4e-207 726.5 489 73.8
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 2.0e-206 722.6 489 72.8
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 5.8e-206 721.1 492 73.0
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 2.7e-203 712.2 489 71.6
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 1.0e-202 710.3 498 71.5
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 2.1e-200 702.6 492 70.5
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 4.8e-200 701.4 489 71.2
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 4.8e-200 701.4 492 71.1
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 1.1e-199 700.3 492 70.3
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.4e-199 699.9 491 69.2
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 4.0e-199 698.4 491 69.0
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.5e-198 696.4 489 69.5
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 7.6e-198 694.1 489 70.3
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 6.4e-197 691.0 490 70.2
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.1e-196 690.3 491 70.7
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 1.9e-196 689.5 489 69.7
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.9e-196 689.5 491 70.3
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 2.3e-194 682.6 490 70.0
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 3.0e-194 682.2 495 69.3
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.5e-193 679.9 494 69.8
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 9.6e-193 677.2 492 69.7
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 3.6e-192 675.2 443 74.7
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 3.6e-192 675.2 480 70.8
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 6.2e-192 674.5 741 51.6
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.1e-191 673.7 492 68.9
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 1.4e-191 673.3 489 68.7
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 9.0e-191 670.6 494 69.4
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 2.6e-190 669.1 399 79.9
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 2.6e-190 669.1 479 69.5
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 3.4e-190 668.7 491 68.8
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 3.4e-190 668.7 491 68.8
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 3.8e-189 665.2 490 68.0
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 3.2e-188 662.1 479 69.5
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 4.2e-188 661.8 489 65.6
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 1.1e-183 647.1 489 65.8
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.4e-183 646.7 489 65.6
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 1.2e-182 643.7 399 77.7
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 2.6e-182 642.5 489 64.4
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 5.8e-182 641.3 489 66.1
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 4.2e-180 635.2 495 65.9
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 3.5e-179 632.1 557 58.2
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.3e-178 630.2 500 64.4
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 1.8e-178 629.8 463 67.6
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 3.9e-178 628.6 404 73.3
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 6.7e-178 627.9 492 66.7
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 1.2e-174 617.1 474 65.2
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 2.6e-174 615.9 438 70.1
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 2.5e-172 609.4 489 63.4
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 7.2e-172 607.8 489 63.6
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 7.2e-172 607.8 460 65.2
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 1.8e-170 603.2 477 63.1
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 3.0e-170 602.4 491 60.9
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 1.6e-168 596.7 458 63.3
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 2.2e-168 596.3 458 64.0
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 1.5e-166 590.1 455 66.6
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 2.0e-166 589.7 469 61.0
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.0e-165 587.4 490 59.6
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 2.9e-165 585.9 490 62.2
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.9e-164 583.2 433 70.4
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 3.2e-164 582.4 434 70.7
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 3.6e-163 578.9 461 64.4
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.4e-162 577.0 490 58.8
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.8e-162 576.6 422 71.3
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.8e-162 576.6 560 53.9
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 2.3e-162 576.2 429 70.4
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 6.7e-162 574.7 434 69.6
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.1e-161 573.9 497 59.8
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.5e-161 573.5 490 59.0
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 2.2e-160 569.7 499 59.1
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.1e-159 567.4 490 58.2
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 1.1e-159 567.4 487 58.9
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 5.3e-159 565.1 414 68.6
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 9.1e-159 564.3 412 70.6
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 1.2e-158 563.9 484 58.3
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 2.6e-158 562.8 484 58.1
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 5.9e-158 561.6 398 68.8
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.0e-157 560.8 491 57.4
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 2.9e-157 559.3 398 66.8
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 3.8e-157 558.9 516 56.4
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 3.8e-157 558.9 491 59.3
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 6.5e-157 558.1 517 58.8
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 2.5e-156 556.2 491 59.7
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 2.5e-156 556.2 403 67.7
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 4.2e-156 555.4 534 56.4
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 9.4e-156 554.3 515 58.8
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 2.1e-155 553.1 406 65.8
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 6.1e-155 551.6 501 58.3
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 6.1e-155 551.6 445 61.1
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.0e-154 550.8 406 65.5
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 1.8e-154 550.1 317 80.8
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 3.0e-154 549.3 362 74.0
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 5.1e-154 548.5 481 58.6
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 5.1e-154 548.5 498 60.2
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 1.1e-153 547.4 512 56.8
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 2.8e-152 542.7 406 67.2
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 2.8e-152 542.7 495 58.4
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 8.2e-152 541.2 429 60.1
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 8.2e-152 541.2 362 73.5
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 2.4e-151 539.7 411 65.9
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.6e-150 537.0 435 61.4
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 7.7e-150 534.6 431 60.3
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 2.2e-149 533.1 431 60.3
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 2.2e-149 533.1 431 60.3
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 3.8e-149 532.3 404 63.6
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 6.5e-149 531.6 490 55.3
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 8.5e-149 531.2 490 55.5
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 1.1e-148 530.8 495 56.2
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 4.2e-148 528.9 557 54.2
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 7.2e-148 528.1 404 62.4
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 6.1e-147 525.0 477 58.3
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 1.8e-146 523.5 429 60.4
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 2.0e-145 520.0 405 62.7
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 2.6e-145 519.6 432 59.5
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 3.3e-145 519.2 400 65.0
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 7.5e-145 518.1 498 54.4
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 9.7e-145 517.7 515 52.6
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 8.2e-144 514.6 491 56.6
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 1.1e-143 514.2 463 56.2
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 1.1e-143 514.2 463 56.2
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 1.1e-143 514.2 463 56.2
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 4.1e-143 512.3 404 62.1
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 2.7e-142 509.6 401 63.1
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 2.7e-142 509.6 408 61.8
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 4.5e-142 508.8 606 47.7
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 7.7e-142 508.1 471 58.0
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 5.5e-140 501.9 464 56.2
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 7.2e-140 501.5 464 56.2
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 9.4e-140 501.1 404 60.4
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 2.6e-137 493.0 489 53.8
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 2.2e-136 490.0 500 53.8
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 8.5e-133 478.0 402 59.2
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 6.1e-131 471.9 371 63.1
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 1.3e-128 464.2 376 63.8
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.0e-125 454.5 402 56.2
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.1e-124 451.1 311 70.1
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 3.2e-119 433.0 403 53.3
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 7.8e-118 428.3 402 52.7
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 2.7e-110 403.3 375 54.9
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 6.0e-94 349.0 323 58.2
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 8.6e-93 345.1 220 74.1
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 4.9e-88 329.3 279 62.7
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.2e-81 308.1 256 61.7
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.7e-80 304.3 223 69.1
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 3.9e-77 293.1 245 60.8
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 2.8e-75 287.0 220 59.5
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.3e-69 267.3 415 42.4
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 7.6e-65 252.3 238 55.9
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 3.8e-64 250.0 311 44.4
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 1.9e-55 221.1 302 41.4
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 2.4e-50 204.1 483 32.5
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 6.5e-40 169.5 269 40.9
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 1.2e-38 165.2 155 56.1
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 8.2e-35 152.5 194 43.8
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 7.7e-33 146.0 141 55.3
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 7.7e-33 146.0 115 58.3
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 4.2e-31 140.2 286 31.5
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 4.0e-29 133.7 653 22.8
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 6.7e-29 132.9 102 62.7
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 1.2e-25 122.1 123 56.1
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.1e-23 115.5 113 55.8
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 7.5e-20 102.8 104 55.8
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 4.1e-18 97.1 236 35.2
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 6.8e-13 79.7 81 53.1
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 6.3e-11 73.2 311 25.7
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.7e-08 65.1 47 61.7
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 2.3e-08 64.7 91 45.1


User provided reference genes

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