Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G568900 Prunus persica HOM05D002722 ORTHO05D035919 4.5e-129 464.5 224 100.0
Prupe.1G568800 Prunus persica HOM05D002722 ORTHO05D035919 6.2e-30 135.2 66 98.5
Lj1A1095T29 Lonicera japonica HOM05D002722 ORTHO05D003076 8.2e-22 108.2 220 31.8
Dinv09476 Davidia involucrata HOM05D002722 ORTHO05D003076 2.6e-20 103.2 220 32.3
Rhsim04G0110900 Rhododendron simsii HOM05D002722 ORTHO05D003076 3.4e-20 102.8 220 30.9
AL5G38450 Arabidopsis lyrata HOM05D002722 ORTHO05D003076 4.5e-20 102.4 212 34.0
PSO017G6910 Papaver somniferum HOM05D002722 ORTHO05D003076 4.5e-20 102.4 156 39.7
PSO478G3377 Papaver somniferum HOM05D002722 ORTHO05D003076 4.5e-20 102.4 156 39.7
MBI10_g18308_MAGBIO Magnolia biondii HOM05D002722 ORTHO05D003076 7.6e-20 101.7 223 32.7
Ca_12664_v3 Cicer arietinum L. HOM05D002722 ORTHO05D003076 1.0e-19 101.3 222 31.5
Sc19g0008230 Simmondsia chinensis HOM05D002722 ORTHO05D003076 1.0e-19 101.3 222 32.0
GSVIVG01033616001 Vitis vinifera HOM05D002722 ORTHO05D003076 1.3e-19 100.9 220 33.6
CARHR167150 Cardamine hirsuta HOM05D002722 ORTHO05D003076 1.7e-19 100.5 210 32.4
Lj6g0004170 Lotus japonicus HOM05D002722 ORTHO05D003076 1.7e-19 100.5 210 32.4
Manes.08G059000 Manihot esculenta HOM05D002722 ORTHO05D003076 1.7e-19 100.5 210 32.4
Psat7g226520 Pisum sativum HOM05D002722 ORTHO05D003076 2.2e-19 100.1 220 33.2
THA.LOC104824404 Tarenaya hassleriana HOM05D002722 ORTHO05D003076 2.9e-19 99.8 221 32.1
Thecc.05G137600 Theobroma cacao HOM05D002722 ORTHO05D003076 2.9e-19 99.8 214 34.1
Aqoxy3G03846 Aquilegia oxysepala HOM05D002722 ORTHO05D003076 3.8e-19 99.4 217 31.8
Lj1g0008464 Lotus japonicus HOM05D002722 ORTHO05D003076 5.0e-19 99.0 210 31.9
Nn3g17659 Nelumbo nucifera HOM05D002722 ORTHO05D003076 5.0e-19 99.0 223 32.3
Thecc.07G138100 Theobroma cacao HOM05D002722 ORTHO05D003076 5.0e-19 99.0 214 34.1
Potri.006G040600 Populus trichocarpa HOM05D002722 ORTHO05D003076 6.5e-19 98.6 210 31.0
Lalb_Chr02g0156551 Lupinus albus HOM05D002722 ORTHO05D003076 8.5e-19 98.2 156 37.8
Migut.D02225 Erythranthe guttata HOM05D002722 ORTHO05D003076 1.1e-18 97.8 230 31.3
Cpa.g.sc1212.2 Carica papaya HOM05D002722 ORTHO05D003076 1.4e-18 97.4 156 35.9
RcHm_v2.0_Chr1g0324931 Rosa chinensis HOM05D002722 ORTHO05D003076 1.9e-18 97.1 227 31.3
AUR62003734 Chenopodium quinoa HOM05D002722 ORTHO05D003076 2.5e-18 96.7 220 28.2
TAR622G0121 Trochodendron aralioides HOM05D002722 ORTHO05D003076 2.5e-18 96.7 156 37.2
Actinidia38157 Actinidia chinensis HOM05D002722 ORTHO05D003076 3.2e-18 96.3 220 30.5
Gohir.A12G115000 Gossypium hirsutum HOM05D002722 ORTHO05D003076 3.2e-18 96.3 209 33.0
Carub.0005s2374 Capsella rubella HOM05D002722 ORTHO05D003076 4.2e-18 95.9 210 31.4
Ca_04642_v3 Cicer arietinum L. HOM05D002722 ORTHO05D003076 4.2e-18 95.9 222 29.3
Dinv34371 Davidia involucrata HOM05D002722 ORTHO05D003076 4.2e-18 95.9 220 30.5
Glyma.12G025100 Glycine max HOM05D002722 ORTHO05D003076 4.2e-18 95.9 210 32.4
Lalb_Chr02g0156541 Lupinus albus HOM05D002722 ORTHO05D003076 4.2e-18 95.9 156 37.2
Medtr3g096190 Medicago truncatula HOM05D002722 ORTHO05D003076 4.2e-18 95.9 235 31.1
GSVIVG01027320001 Vitis vinifera HOM05D002722 ORTHO05D003076 4.2e-18 95.9 156 37.8
Gorai.008G117700 Gossypium raimondii HOM05D002722 ORTHO05D003076 5.5e-18 95.5 156 37.2
MD14G1085000 Malus domestica HOM05D002722 ORTHO05D003076 5.5e-18 95.5 218 29.8
ATR1098G114 Amborella trichopoda HOM05D002722 ORTHO05D003076 7.2e-18 95.1 223 30.5
AUR62022313 Chenopodium quinoa HOM05D002722 ORTHO05D003076 7.2e-18 95.1 157 33.1
ECA246G4177 Erigeron canadensis HOM05D002722 ORTHO05D003076 7.2e-18 95.1 230 29.6
Prupe.7G040700 Prunus persica HOM05D002722 ORTHO05D003076 7.2e-18 95.1 217 29.5
EL10As8g23871 Beta vulgaris HOM05D002722 ORTHO05D003076 9.3e-18 94.7 157 32.5
Gohir.D12G108700 Gossypium hirsutum HOM05D002722 ORTHO05D003076 9.3e-18 94.7 156 37.2
Gohir.D12G118500 Gossypium hirsutum HOM05D002722 ORTHO05D003076 9.3e-18 94.7 156 37.2
Gorai.008G128200 Gossypium raimondii HOM05D002722 ORTHO05D003076 9.3e-18 94.7 156 37.2
SGA_v2.0_scaffold94G28531 Striga asiatica HOM05D002722 ORTHO05D003076 9.3e-18 94.7 247 29.1
Aa31LG10G11900 Aethionema arabicum HOM05D002722 ORTHO05D003076 1.2e-17 94.4 210 31.0
CANSAT64G0594 Cannabis sativa HOM05D002722 ORTHO05D003076 1.2e-17 94.4 215 31.2
Potri.016G037500 Populus trichocarpa HOM05D002722 ORTHO05D003076 1.2e-17 94.4 213 30.5
Medtr4g032390 Medicago truncatula HOM05D002722 ORTHO05D003076 1.6e-17 94.0 208 31.2
Ciclev10005540m.g Citrus clementina HOM05D002722 ORTHO05D003076 2.1e-17 93.6 209 31.6
Os02g0290400 Oryza sativa ssp. japonica HOM05D002722 ORTHO05D003076 2.1e-17 93.6 219 30.6
A09p49930 Brassica napus HOM05D002722 ORTHO05D003076 2.7e-17 93.2 216 31.0
BraA09t40444Z Brassica rapa HOM05D002722 ORTHO05D003076 2.7e-17 93.2 216 31.0
TWI77G0285 Tripterygium wilfordii HOM05D002722 ORTHO05D003076 2.7e-17 93.2 156 33.3
BcaC07g40020 Brassica carinata HOM05D002722 ORTHO05D003076 3.6e-17 92.8 210 31.4
C08p32330 Brassica napus HOM05D002722 ORTHO05D003076 3.6e-17 92.8 210 31.4
BolC8t50847H Brassica oleracea HOM05D002722 ORTHO05D003076 3.6e-17 92.8 210 31.4
CSS0045331 Camellia sinensis var. sinensis HOM05D002722 ORTHO05D003076 3.6e-17 92.8 221 29.0
CDE06G1766 Ceratophyllum demersum HOM05D002722 ORTHO05D003076 3.6e-17 92.8 156 35.3
Glyma.11G099000 Glycine max HOM05D002722 ORTHO05D003076 3.6e-17 92.8 210 31.9
Sabra16G0039500 Salix brachista HOM05D002722 ORTHO05D003076 3.6e-17 92.8 210 30.0
THA.LOC104803263 Tarenaya hassleriana HOM05D002722 ORTHO05D003076 3.6e-17 92.8 209 30.6
Zm00001eb249350 Zea mays HOM05D002722 ORTHO05D003076 3.6e-17 92.8 156 34.6
Ah.04g151050 Amaranthus hybridus HOM05D002722 ORTHO05D003076 4.6e-17 92.4 215 28.8
FAN10G3784 Fragaria x ananassa HOM05D002722 ORTHO05D003076 4.6e-17 92.4 217 31.3
Sopen12g008390 Solanum pennellii HOM05D002722 ORTHO05D003076 4.6e-17 92.4 220 29.1
arahy.Tifrunner.gnm1.ann1.S7ZPK3 Arachis hypogaea HOM05D002722 ORTHO05D003076 6.1e-17 92.0 156 35.9
DCAR_015349 Daucus carota HOM05D002722 ORTHO05D003076 7.9e-17 91.7 216 29.6
Nitab4.5_0006579g0030 Nicotiana tabacum HOM05D002722 ORTHO05D003076 7.9e-17 91.7 228 29.4
TWI53G0099 Tripterygium wilfordii HOM05D002722 ORTHO05D003076 7.9e-17 91.7 158 32.9
Thhalv10006512m.g Eutrema salsugineum HOM05D002722 ORTHO05D003076 1.0e-16 91.3 157 35.0
FAN03G1329 Fragaria x ananassa HOM05D002722 ORTHO05D003076 1.0e-16 91.3 217 31.3
FAN06G2456 Fragaria x ananassa HOM05D002722 ORTHO05D003076 1.0e-16 91.3 217 31.3
HanXRQChr03g0084251 Helianthus annuus HOM05D002722 ORTHO05D003076 1.0e-16 91.3 230 30.4
MD02G1295100 Malus domestica HOM05D002722 ORTHO05D003076 1.0e-16 91.3 222 32.0
arahy.Tifrunner.gnm1.ann1.ZN92QR Arachis hypogaea HOM05D002722 ORTHO05D003076 1.3e-16 90.9 156 35.3
Hma1.2p1_0004F.1_g003775 Hydrangea macrophylla HOM05D002722 ORTHO05D003076 1.3e-16 90.9 156 35.3
Hma1.2p1_2276F.1_g318640 Hydrangea macrophylla HOM05D002722 ORTHO05D003076 1.3e-16 90.9 156 35.3
MD02G1295000 Malus domestica HOM05D002722 ORTHO05D003076 1.3e-16 90.9 156 34.0
BcaC07g40087 Brassica carinata HOM05D002722 ORTHO05D003076 1.8e-16 90.5 209 30.1
Phvul.011G027300 Phaseolus vulgaris HOM05D002722 ORTHO05D003076 1.8e-16 90.5 232 30.2
Solyc12g017630.2 Solanum lycopersicum HOM05D002722 ORTHO05D003076 1.8e-16 90.5 220 29.1
AT3G57000 Arabidopsis thaliana HOM05D002722 ORTHO05D003076 2.3e-16 90.1 212 31.6
CiPaw.09G046900 Carya illinoinensis HOM05D002722 ORTHO05D003076 2.3e-16 90.1 209 31.1
Cc06_g19070 Coffea canephora HOM05D002722 ORTHO05D003076 2.3e-16 90.1 210 27.1
HanXRQChr13g0414121 Helianthus annuus HOM05D002722 ORTHO05D003076 2.3e-16 90.1 210 31.0
Hma1.2p1_0065F.1_g035090 Hydrangea macrophylla HOM05D002722 ORTHO05D003076 2.3e-16 90.1 155 36.8
Nitab4.5_0007985g0020 Nicotiana tabacum HOM05D002722 ORTHO05D003076 2.3e-16 90.1 220 29.1
CDE04G2576 Ceratophyllum demersum HOM05D002722 ORTHO05D003076 3.0e-16 89.7 156 34.0
CAN.G506.9 Capsicum annuum HOM05D002722 ORTHO05D003076 3.9e-16 89.4 220 29.1
Sabra16G0022400 Salix brachista HOM05D002722 ORTHO05D003076 3.9e-16 89.4 213 29.1
Sabra16G0029700 Salix brachista HOM05D002722 ORTHO05D003076 3.9e-16 89.4 213 29.1
Sabra16G0039200 Salix brachista HOM05D002722 ORTHO05D003076 3.9e-16 89.4 156 33.3
Sabra16G0044400 Salix brachista HOM05D002722 ORTHO05D003076 3.9e-16 89.4 156 33.3
CSS0013149 Camellia sinensis var. sinensis HOM05D002722 ORTHO05D003076 5.1e-16 89.0 221 30.3
PGR142G2871 Punica granatum HOM05D002722 ORTHO05D003076 5.1e-16 89.0 213 28.2
VMungo1127G1646 Vigna mungo HOM05D002722 ORTHO05D003076 5.1e-16 89.0 156 35.9
Oeu059335.1 Olea europaea HOM05D002722 ORTHO05D003076 6.7e-16 88.6 224 28.1
SMO347G0033 Selaginella moellendorffii HOM05D002722 ORTHO05D003076 1.1e-15 87.8 156 36.5
HPP92_003789 Vanilla planifolia HOM05D002722 ORTHO05D003076 1.1e-15 87.8 214 30.4
Sp5g05580 Schrenkiella parvula HOM05D002722 ORTHO05D003076 1.5e-15 87.4 210 29.5
MSTRG.23859 Avicennia marina HOM05D002722 ORTHO05D003076 1.9e-15 87.0 225 28.9
BcaB02g07626 Brassica carinata HOM05D002722 ORTHO05D003076 2.5e-15 86.7 223 29.6
PGSC0003DMG400033615 Solanum tuberosum HOM05D002722 ORTHO05D003076 3.3e-15 86.3 220 28.2
SGA_v2.0_scaffold273G46400 Striga asiatica HOM05D002722 ORTHO05D003076 4.3e-15 85.9 214 29.4
Peaxi162Scf00105g01445 Petunia axillaris HOM05D002722 ORTHO05D003076 7.4e-15 85.1 222 27.9
Sed0020900 Sechium edule HOM05D002722 ORTHO05D003076 9.7e-15 84.7 210 30.5
Mapoly0014s0080 Marchantia polymorpha HOM05D002722 ORTHO05D003076 1.3e-14 84.3 227 28.6
Peaxi162Scf00013g01020 Petunia axillaris HOM05D002722 ORTHO05D003076 2.2e-14 83.6 210 28.6
Rhsim09G0083500 Rhododendron simsii HOM05D002722 ORTHO05D003076 2.2e-14 83.6 156 32.7
Nitab4.5_0007571g0010 Nicotiana tabacum HOM05D002722 ORTHO05D003076 3.7e-14 82.8 156 34.0
CANSAT54G0215 Cannabis sativa HOM05D002722 ORTHO05D003076 6.3e-14 82.0 215 29.8
Eucgr.A00197 Eucalyptus grandis HOM05D002722 ORTHO05D003076 6.3e-14 82.0 152 32.9
Gohir.A12G087250 Gossypium hirsutum HOM05D002722 ORTHO05D003076 6.3e-14 82.0 173 34.1
Prupe.1G569200 Prunus persica HOM05D002722 ORTHO05D003076 8.2e-14 81.6 156 32.1
Cfa020075 Carpinus fangiana HOM05D002722 ORTHO05D003076 1.8e-13 80.5 154 34.4
Pp3c24_11670 Physcomitrium patens HOM05D002722 ORTHO05D003076 1.8e-13 80.5 233 28.8
Sed0003772 Sechium edule HOM05D002722 ORTHO05D003076 3.1e-13 79.7 166 31.9
Hund00512 Selenicereus undatus HOM05D002722 ORTHO05D003076 3.1e-13 79.7 158 31.6
QL08p033654 Quercus lobata HOM05D002722 ORTHO05D003076 6.9e-13 78.6 158 34.2
arahy.Tifrunner.gnm1.ann1.EUNR7S Arachis hypogaea HOM05D002722 ORTHO05D003076 9.0e-13 78.2 156 29.5
Ah.00g000670 Amaranthus hybridus HOM05D002722 ORTHO05D003076 1.2e-12 77.8 156 30.8
Lj1A1097T43 Lonicera japonica HOM05D002722 ORTHO05D003076 1.5e-12 77.4 184 31.0
Gorai.008G095800 Gossypium raimondii HOM05D002722 ORTHO05D003076 2.0e-12 77.0 158 34.2
Nitab4.5_0000125g0340 Nicotiana tabacum HOM05D002722 ORTHO05D003076 2.0e-12 77.0 222 26.6
EL10Ac5g11207 Beta vulgaris HOM05D002722 ORTHO05D003076 4.5e-12 75.9 158 32.3
MELO3C020061.2 Cucumis melo HOM05D002722 ORTHO05D003076 5.9e-12 75.5 157 33.1
Prupe.1G569000 Prunus persica HOM05D002722 ORTHO05D003076 5.9e-12 75.5 165 33.3
unitig_37.g12701 Utricularia gibba HOM05D002722 ORTHO05D003076 5.9e-12 75.5 237 27.0
Nitab4.5_0005720g0010 Nicotiana tabacum HOM05D002722 ORTHO05D003076 7.7e-12 75.1 149 32.9
AUR62026605 Chenopodium quinoa HOM05D002722 ORTHO05D003076 1.0e-11 74.7 197 29.9
AUR62022315 Chenopodium quinoa HOM05D002722 ORTHO05D003076 1.7e-11 73.9 184 30.4
SalBow8G4805 Salvia bowleyana HOM05D002722 ORTHO05D003076 1.7e-11 73.9 223 27.4
ClCG07G006900 Citrullus lanatus HOM05D002722 ORTHO05D003076 2.2e-11 73.6 204 30.4
SalBow5G1745 Salvia bowleyana HOM05D002722 ORTHO05D003076 2.2e-11 73.6 212 27.8
DCAR_013140 Daucus carota HOM05D002722 ORTHO05D003076 2.9e-11 73.2 253 25.3
SalBow8G2070 Salvia bowleyana HOM05D002722 ORTHO05D003076 2.9e-11 73.2 161 29.8
Cc05_g02860 Coffea canephora HOM05D002722 ORTHO05D003076 6.5e-11 72.0 157 31.2
Glyma.17G046050 Glycine max HOM05D002722 ORTHO05D035919 6.5e-11 72.0 113 34.5
TPR.G8394 Trifolium pratense HOM05D002722 ORTHO05D003076 8.5e-11 71.6 206 28.2
arahy.Tifrunner.gnm1.ann1.00JXB8 Arachis hypogaea HOM05D002722 ORTHO05D003076 1.9e-10 70.5 158 29.7
Medtr1g112880 Medicago truncatula HOM05D002722 ORTHO05D003076 1.9e-10 70.5 158 31.0
MD08G1038500 Malus domestica HOM05D002722 ORTHO05D003076 2.5e-10 70.1 164 30.5
CSS0008082 Camellia sinensis var. sinensis HOM05D002722 ORTHO05D003076 4.2e-10 69.3 218 27.1
CSS0007850 Camellia sinensis var. sinensis HOM05D002722 ORTHO05D003076 7.2e-10 68.6 149 29.5
CSS0033813 Camellia sinensis var. sinensis HOM05D002722 ORTHO05D003076 7.2e-10 68.6 224 28.1
TPR.G22980 Trifolium pratense HOM05D002722 ORTHO05D003076 7.2e-10 68.6 194 28.9
Cre01.g009950 Chlamydomonas reinhardtii HOM05D002722 ORTHO05D003076 9.4e-10 68.2 156 27.6
COL.COLO4_35076 Corchorus olitorius HOM05D002722 ORTHO05D003076 9.4e-10 68.2 189 31.7
arahy.Tifrunner.gnm1.ann1.ZT4TH6 Arachis hypogaea HOM05D002722 ORTHO05D003076 2.1e-09 67.0 158 30.4
FvH4_7g03130 Fragaria vesca HOM05D002722 ORTHO05D003076 2.1e-09 67.0 196 29.6
MCO01G479 Micromonas commoda HOM05D002722 ORTHO05D003076 2.1e-09 67.0 156 28.2
Duzib093G1218 Durio zibethinus HOM05D002722 ORTHO05D003076 2.7e-09 66.6 183 30.6
Atru.chr6.2789 Acer truncatum HOM05D002722 ORTHO05D003076 3.6e-09 66.2 184 29.9
arahy.Tifrunner.gnm1.ann1.PL1MYW Arachis hypogaea HOM05D002722 ORTHO05D003076 3.6e-09 66.2 131 31.3
PRCOL_00005011 Prasinoderma coloniale HOM05D002722 ORTHO05D003076 3.6e-09 66.2 240 27.1
AUR62023903 Chenopodium quinoa HOM05D002722 ORTHO05D003076 6.1e-09 65.5 196 28.1
Gorai.008G249100 Gossypium raimondii HOM05D002722 ORTHO05D003076 7.9e-09 65.1 148 31.1
vmacro09026 Vaccinium macrocarpon HOM05D002722 ORTHO05D003076 7.9e-09 65.1 130 31.5
Haze_05926 Corylus avellana HOM05D002722 ORTHO05D003076 1.4e-08 64.3 178 29.8
Lsat_1_v5_gn_6_79381 Lactuca sativa HOM05D002722 ORTHO05D003076 1.4e-08 64.3 77 40.3
QL07p009818 Quercus lobata HOM05D002722 ORTHO05D003076 1.4e-08 64.3 187 30.5
Medtr5g464770 Medicago truncatula HOM05D002722 ORTHO05D003076 1.8e-08 63.9 231 25.1
Hund19102 Selenicereus undatus HOM05D002722 ORTHO05D003076 2.3e-08 63.5 208 26.9
AUR62016563 Chenopodium quinoa HOM05D002722 ORTHO05D003076 3.0e-08 63.2 138 29.7
Sc13g0001220 Simmondsia chinensis HOM05D002722 ORTHO05D003076 3.0e-08 63.2 80 36.2
Hund00513 Selenicereus undatus HOM05D002722 ORTHO05D003076 3.9e-08 62.8 156 28.8
Duzib128G1110 Durio zibethinus HOM05D002722 ORTHO05D003076 4.4e-07 59.3 79 39.2
Sopen08g021640 Solanum pennellii HOM05D002722 ORTHO05D003076 4.4e-07 59.3 85 32.9
arahy.Tifrunner.gnm1.ann1.KMZL4Z Arachis hypogaea HOM05D002722 ORTHO05D003076 7.4e-07 58.5 156 28.2
EL10Ac5g11210 Beta vulgaris HOM05D002722 ORTHO05D003076 9.7e-07 58.2 127 30.7
AUR62014167 Chenopodium quinoa HOM05D002722 ORTHO05D003076 1.3e-06 57.8 151 25.8
arahy.Tifrunner.gnm1.ann1.FV4B32 Arachis hypogaea HOM05D002722 ORTHO05D003076 2.8e-06 56.6 187 25.7
arahy.Tifrunner.gnm1.ann1.QALZ28 Arachis hypogaea HOM05D002722 ORTHO05D003076 2.8e-06 56.6 80 37.5
Thecc.03G273900 Theobroma cacao HOM05D002722 ORTHO05D003076 8.2e-06 55.1 84 33.3


User provided reference genes

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