Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G562500 Prunus persica HOM05D000169 ORTHO05D335157 3.4e-53 211.5 111 100.0
Prupe.7G129300 Prunus persica HOM05D000169 ORTHO05D003054 2.7e-34 148.7 113 76.1
QL07p043151 Quercus lobata HOM05D000169 ORTHO05D003054 9.6e-24 113.6 113 59.3
FAN02G0263 Fragaria x ananassa HOM05D000169 ORTHO05D003054 2.1e-23 112.5 110 61.8
FvH4_6g16460 Fragaria vesca HOM05D000169 ORTHO05D003054 8.2e-23 110.5 110 60.9
QL07p043176 Quercus lobata HOM05D000169 ORTHO05D003054 5.3e-22 107.8 109 57.8
Sed0009777 Sechium edule HOM05D000169 ORTHO05D003054 1.5e-21 106.3 110 56.4
CiPaw.10G129400 Carya illinoinensis HOM05D000169 ORTHO05D003054 2.6e-21 105.5 109 56.0
FAN14G2807 Fragaria x ananassa HOM05D000169 ORTHO05D003054 2.6e-21 105.5 110 60.0
CiPaw.10G129300 Carya illinoinensis HOM05D000169 ORTHO05D003054 4.5e-21 104.8 110 56.4
CANSAT80G0495 Cannabis sativa HOM05D000169 ORTHO05D003054 4.9e-20 101.3 110 54.5
Haze_20531 Corylus avellana HOM05D000169 ORTHO05D003054 1.1e-19 100.1 110 53.6
Haze_16123 Corylus avellana HOM05D000169 ORTHO05D003054 5.5e-19 97.8 110 52.7
Cfa017619 Carpinus fangiana HOM05D000169 ORTHO05D003054 9.3e-19 97.1 110 51.8
Haze_20532 Corylus avellana HOM05D000169 ORTHO05D003054 9.3e-19 97.1 110 52.7
Cfa017620 Carpinus fangiana HOM05D000169 ORTHO05D003054 1.6e-18 96.3 110 51.8
CsaV3_3G036010 Cucumis sativus L. HOM05D000169 ORTHO05D003054 2.7e-18 95.5 108 51.9
ClCG10G020080 Citrullus lanatus HOM05D000169 ORTHO05D003054 4.6e-18 94.7 110 51.8
Cfa017621 Carpinus fangiana HOM05D000169 ORTHO05D003054 6.0e-18 94.4 110 50.9
MELO3C009362.2 Cucumis melo HOM05D000169 ORTHO05D003054 2.3e-17 92.4 108 50.9
Gohir.A09G146200 Gossypium hirsutum HOM05D000169 ORTHO05D003054 3.0e-17 92.0 112 50.9
Manes.09G065500 Manihot esculenta HOM05D000169 ORTHO05D003054 3.0e-17 92.0 110 52.7
QL04p092512 Quercus lobata HOM05D000169 ORTHO05D003054 3.9e-17 91.7 77 62.3
COL.COLO4_26952 Corchorus olitorius HOM05D000169 ORTHO05D003054 6.7e-17 90.9 111 51.4
Gohir.D09G141900 Gossypium hirsutum HOM05D000169 ORTHO05D003054 6.7e-17 90.9 112 50.9
Gorai.006G162900 Gossypium raimondii HOM05D000169 ORTHO05D003054 1.5e-16 89.7 112 50.9
Thecc.05G067900 Theobroma cacao HOM05D000169 ORTHO05D003054 2.5e-16 89.0 111 49.5
Haze_20534 Corylus avellana HOM05D000169 ORTHO05D003054 4.8e-15 84.7 104 50.0
Medtr1g063110 Medicago truncatula HOM05D000169 ORTHO05D003054 1.8e-14 82.8 110 49.1
Cpa.g.sc102.33 Carica papaya HOM05D000169 ORTHO05D003054 2.4e-14 82.4 112 49.1
Psat6g073720 Pisum sativum HOM05D000169 ORTHO05D003054 2.4e-14 82.4 113 47.8
CDE02G2934 Ceratophyllum demersum HOM05D000169 ORTHO05D003054 6.9e-14 80.9 110 47.3
Ca_11508_v3 Cicer arietinum L. HOM05D000169 ORTHO05D003054 9.0e-14 80.5 102 49.0
TAR623G1092 Trochodendron aralioides HOM05D000169 ORTHO05D003054 1.5e-13 79.7 101 51.5
TAR369G0245 Trochodendron aralioides HOM05D000169 ORTHO05D003054 3.4e-13 78.6 101 48.5
Psat6g073680 Pisum sativum HOM05D000169 ORTHO05D003054 4.5e-13 78.2 113 45.1
Psat6g073560 Pisum sativum HOM05D000169 ORTHO05D003054 7.6e-13 77.4 113 44.2
CSS0010082 Camellia sinensis var. sinensis HOM05D000169 ORTHO05D003054 1.0e-12 77.0 101 48.5
COL.COLO4_11060 Corchorus olitorius HOM05D000169 ORTHO05D003054 1.0e-12 77.0 110 45.5
Dinv34725 Davidia involucrata HOM05D000169 ORTHO05D003054 1.0e-12 77.0 99 50.5
Gohir.A03G030300 Gossypium hirsutum HOM05D000169 ORTHO05D003054 1.3e-12 76.6 101 48.5
COL.COLO4_11059 Corchorus olitorius HOM05D000169 ORTHO05D003054 2.2e-12 75.9 101 48.5
PGR142G4173 Punica granatum HOM05D000169 ORTHO05D003054 2.2e-12 75.9 114 44.7
Rhsim01G0211600 Rhododendron simsii HOM05D000169 ORTHO05D003054 2.2e-12 75.9 102 50.0
Cpa.g.sc65.40 Carica papaya HOM05D000169 ORTHO05D003054 3.8e-12 75.1 101 47.5
FAN11G1745 Fragaria x ananassa HOM05D000169 ORTHO05D003054 3.8e-12 75.1 110 43.6
Nn6g35284 Nelumbo nucifera HOM05D000169 ORTHO05D003054 3.8e-12 75.1 110 46.4
Eucgr.K02927 Eucalyptus grandis HOM05D000169 ORTHO05D003054 5.0e-12 74.7 113 44.2
Cpa.g.sc65.39 Carica papaya HOM05D000169 ORTHO05D003054 6.5e-12 74.3 101 44.6
Gohir.D03G138200 Gossypium hirsutum HOM05D000169 ORTHO05D003054 6.5e-12 74.3 101 47.5
RcHm_v2.0_Chr5g0057621 Rosa chinensis HOM05D000169 ORTHO05D003054 6.5e-12 74.3 99 46.5
Thecc.09G348900 Theobroma cacao HOM05D000169 ORTHO05D003054 6.5e-12 74.3 101 46.5
vmacro14405 Vaccinium macrocarpon HOM05D000169 ORTHO05D003054 6.5e-12 74.3 102 49.0
Duzib150G0233 Durio zibethinus HOM05D000169 ORTHO05D003054 8.5e-12 73.9 101 46.5
Eucgr.K02929 Eucalyptus grandis HOM05D000169 ORTHO05D003054 8.5e-12 73.9 113 44.2
Hma1.2p1_0205F.1_g086960 Hydrangea macrophylla HOM05D000169 ORTHO05D003054 8.5e-12 73.9 111 45.0
FvH4_3g30980 Fragaria vesca HOM05D000169 ORTHO05D003054 1.1e-11 73.6 110 42.7
FAN21G0851 Fragaria x ananassa HOM05D000169 ORTHO05D003054 1.1e-11 73.6 110 42.7
FAN25G2901 Fragaria x ananassa HOM05D000169 ORTHO05D003054 1.1e-11 73.6 110 42.7
Medtr1g063120 Medicago truncatula HOM05D000169 ORTHO05D003054 1.1e-11 73.6 113 44.2
vmacro14403 Vaccinium macrocarpon HOM05D000169 ORTHO05D003054 1.1e-11 73.6 111 49.5
RcHm_v2.0_Chr5g0057631 Rosa chinensis HOM05D000169 ORTHO05D003054 1.4e-11 73.2 110 43.6
SGA_v2.0_scaffold263G45968 Striga asiatica HOM05D000169 ORTHO05D003054 1.4e-11 73.2 110 46.4
Gohir.D03G138000 Gossypium hirsutum HOM05D000169 ORTHO05D003054 1.9e-11 72.8 101 47.5
Sabra17G0093500 Salix brachista HOM05D000169 ORTHO05D003054 1.9e-11 72.8 101 46.5
CiPaw.14G088000 Carya illinoinensis HOM05D000169 ORTHO05D003054 2.5e-11 72.4 101 43.6
Phvul.011G084300 Phaseolus vulgaris HOM05D000169 ORTHO05D003054 2.5e-11 72.4 68 58.8
QL01p015740 Quercus lobata HOM05D000169 ORTHO05D003054 2.5e-11 72.4 101 45.5
Sed0017117 Sechium edule HOM05D000169 ORTHO05D003054 2.5e-11 72.4 99 42.4
Potri.004G102000 Populus trichocarpa HOM05D000169 ORTHO05D003054 3.2e-11 72.0 101 46.5
TPR.G11268 Trifolium pratense HOM05D000169 ORTHO05D003054 4.2e-11 71.6 79 50.6
GSVIVG01033646001 Vitis vinifera HOM05D000169 ORTHO05D003054 4.2e-11 71.6 101 45.5
MSTRG.21096 Avicennia marina HOM05D000169 ORTHO05D003054 5.5e-11 71.2 108 45.4
Dinv29360 Davidia involucrata HOM05D000169 ORTHO05D003054 5.5e-11 71.2 101 46.5
Potri.017G112800 Populus trichocarpa HOM05D000169 ORTHO05D003054 5.5e-11 71.2 101 45.5
Rhsim01G0211500 Rhododendron simsii HOM05D000169 ORTHO05D003054 7.2e-11 70.9 101 46.5
Sabra04G0078400 Salix brachista HOM05D000169 ORTHO05D003054 7.2e-11 70.9 101 44.6
SalBow3G3447 Salvia bowleyana HOM05D000169 ORTHO05D003054 7.2e-11 70.9 110 43.6
Hma1.2p1_0205F.1_g086940 Hydrangea macrophylla HOM05D000169 ORTHO05D003054 9.4e-11 70.5 111 43.2
Duzib168G1690 Durio zibethinus HOM05D000169 ORTHO05D003054 1.2e-10 70.1 101 44.6
Duzib170G1018 Durio zibethinus HOM05D000169 ORTHO05D003054 1.2e-10 70.1 101 46.5
SalBow2G2870 Salvia bowleyana HOM05D000169 ORTHO05D003054 1.6e-10 69.7 105 43.8
Hund08368 Selenicereus undatus HOM05D000169 ORTHO05D003054 1.6e-10 69.7 101 45.5
MELO3C004955.2 Cucumis melo HOM05D000169 ORTHO05D003054 2.1e-10 69.3 99 40.4
RcHm_v2.0_Chr5g0057541 Rosa chinensis HOM05D000169 ORTHO05D003054 2.1e-10 69.3 99 43.4
Aqoxy1G01147 Aquilegia oxysepala HOM05D000169 ORTHO05D003054 2.7e-10 68.9 101 47.5
PGR102G0787 Punica granatum HOM05D000169 ORTHO05D003054 2.7e-10 68.9 101 42.6
QL01p015722 Quercus lobata HOM05D000169 ORTHO05D003054 2.7e-10 68.9 101 44.6
CsaV3_1G013520 Cucumis sativus L. HOM05D000169 ORTHO05D003054 3.6e-10 68.6 99 39.4
Oeu029894.1 Olea europaea HOM05D000169 ORTHO05D003054 3.6e-10 68.6 101 45.5
SGA_v2.0_scaffold180G39600 Striga asiatica HOM05D000169 ORTHO05D003054 3.6e-10 68.6 110 41.8
ClCG03G002760 Citrullus lanatus HOM05D000169 ORTHO05D003054 4.6e-10 68.2 99 40.4
Medtr4g057730 Medicago truncatula HOM05D000169 ORTHO05D003054 4.6e-10 68.2 101 46.5
PGSC0003DMG400008122 Solanum tuberosum HOM05D000169 ORTHO05D003054 4.6e-10 68.2 102 43.1
THA.LOC104812629 Tarenaya hassleriana HOM05D000169 ORTHO05D003054 4.6e-10 68.2 101 44.6
Nitab4.5_0007877g0010 Nicotiana tabacum HOM05D000169 ORTHO05D003054 7.9e-10 67.4 102 44.1
CiPaw.13G119400 Carya illinoinensis HOM05D000169 ORTHO05D003054 1.0e-09 67.0 101 41.6
Gohir.A13G232500 Gossypium hirsutum HOM05D000169 ORTHO05D003054 1.0e-09 67.0 101 43.6
Nitab4.5_0007707g0010 Nicotiana tabacum HOM05D000169 ORTHO05D003054 1.0e-09 67.0 111 41.4
Prupe.6G109000 Prunus persica HOM05D000169 ORTHO05D003054 1.0e-09 67.0 101 44.6
Ah.02g114440 Amaranthus hybridus HOM05D000169 ORTHO05D003054 1.4e-09 66.6 101 44.6
Sopen11g027760 Solanum pennellii HOM05D000169 ORTHO05D003054 1.4e-09 66.6 111 41.4
THA.LOC104806267 Tarenaya hassleriana HOM05D000169 ORTHO05D003054 1.4e-09 66.6 101 41.6
Peaxi162Scf00682g00113 Petunia axillaris HOM05D000169 ORTHO05D003054 2.3e-09 65.9 101 42.6
Glyma.11G194500 Glycine max HOM05D000169 ORTHO05D003054 3.0e-09 65.5 67 55.2
Solyc11g069050.2 Solanum lycopersicum HOM05D000169 ORTHO05D003054 3.0e-09 65.5 111 41.4
CDE09G0436 Ceratophyllum demersum HOM05D000169 ORTHO05D003054 3.9e-09 65.1 79 46.8
Ciclev10028138m.g Citrus clementina HOM05D000169 ORTHO05D003054 3.9e-09 65.1 99 41.4
Eucgr.B03942 Eucalyptus grandis HOM05D000169 ORTHO05D003054 3.9e-09 65.1 101 42.6
Eucgr.B03943 Eucalyptus grandis HOM05D000169 ORTHO05D003054 3.9e-09 65.1 101 42.6
Manes.04G015100 Manihot esculenta HOM05D000169 ORTHO05D003054 3.9e-09 65.1 101 42.6
Gohir.D13G238200 Gossypium hirsutum HOM05D000169 ORTHO05D003054 5.1e-09 64.7 101 42.6
Gorai.013G269100 Gossypium raimondii HOM05D000169 ORTHO05D003054 5.1e-09 64.7 101 42.6
Medtr2g095510 Medicago truncatula HOM05D000169 ORTHO05D003054 5.1e-09 64.7 99 43.4
Oeu056536.1 Olea europaea HOM05D000169 ORTHO05D003639 5.1e-09 64.7 105 41.9
AT4G05160 Arabidopsis thaliana HOM05D000169 ORTHO05D003054 6.7e-09 64.3 101 41.6
PSO339G0149 Papaver somniferum HOM05D000169 ORTHO05D003054 6.7e-09 64.3 99 39.4
Cc06_g04280 Coffea canephora HOM05D000169 ORTHO05D003054 8.8e-09 63.9 108 42.6
Haze_23735 Corylus avellana HOM05D000169 ORTHO05D003054 8.8e-09 63.9 101 41.6
Lj3g0013685 Lotus japonicus HOM05D000169 ORTHO05D003054 8.8e-09 63.9 65 56.9
QL10p027003 Quercus lobata HOM05D002566 ORTHO05D048473 8.8e-09 63.9 42 71.4
Thhalv10028562m.g Eutrema salsugineum HOM05D000169 ORTHO05D003054 1.1e-08 63.5 110 39.1
Lalb_Chr19g0137011 Lupinus albus HOM05D000169 ORTHO05D003054 1.1e-08 63.5 59 59.3
Carub.0006s3311 Capsella rubella HOM05D000169 ORTHO05D003054 1.5e-08 63.2 101 40.6
Lsat_1_v5_gn_6_43941 Lactuca sativa HOM05D000169 ORTHO05D003054 1.5e-08 63.2 102 44.1
TWI79G1295 Tripterygium wilfordii HOM05D000169 ORTHO05D003054 1.5e-08 63.2 101 39.6
VMungo1127G0863 Vigna mungo HOM05D000169 ORTHO05D003054 1.5e-08 63.2 67 53.7
Aa31LG6G3430 Aethionema arabicum HOM05D000169 ORTHO05D003054 1.9e-08 62.8 110 40.0
Migut.D02264 Erythranthe guttata HOM05D000169 ORTHO05D003054 1.9e-08 62.8 110 41.8
HanXRQChr01g0027781 Helianthus annuus HOM05D000169 ORTHO05D003054 1.9e-08 62.8 108 39.8
QL01p015747 Quercus lobata HOM05D000169 ORTHO05D003054 1.9e-08 62.8 103 43.7
Sp6g03830 Schrenkiella parvula HOM05D000169 ORTHO05D003054 1.9e-08 62.8 67 50.7
AL6G48760 Arabidopsis lyrata HOM05D000169 ORTHO05D003054 2.5e-08 62.4 101 39.6
ECA233G3978 Erigeron canadensis HOM05D000169 ORTHO05D003054 2.5e-08 62.4 101 39.6
PSO339G1882 Papaver somniferum HOM05D000169 ORTHO05D003054 2.5e-08 62.4 99 40.4
CAN.G546.13 Capsicum annuum HOM05D000169 ORTHO05D003054 3.3e-08 62.0 102 41.2
Thhalv10028563m.g Eutrema salsugineum HOM05D000169 ORTHO05D003054 3.3e-08 62.0 67 49.3
SalBow2G1067 Salvia bowleyana HOM05D000169 ORTHO05D003054 3.3e-08 62.0 101 40.6
RcHm_v2.0_Chr5g0057431 Rosa chinensis HOM05D000169 ORTHO05D003054 4.3e-08 61.6 61 49.2
Atru.chr3.3543 Acer truncatum HOM05D000169 ORTHO05D003054 5.7e-08 61.2 101 36.6
Lj3g0019226 Lotus japonicus HOM05D000169 ORTHO05D003054 5.7e-08 61.2 63 54.0
PSO063G5376 Papaver somniferum HOM05D000169 ORTHO05D003054 5.7e-08 61.2 99 40.4
Cfa012004 Carpinus fangiana HOM05D000169 ORTHO05D003054 7.4e-08 60.8 101 40.6
BcaC04g21379 Brassica carinata HOM05D000169 ORTHO05D003054 9.7e-08 60.5 93 43.0
C09p32510 Brassica napus HOM05D000169 ORTHO05D003054 9.7e-08 60.5 93 43.0
VMungo1080G0397 Vigna mungo HOM05D000169 ORTHO05D003054 9.7e-08 60.5 67 47.8
AUR62014933 Chenopodium quinoa HOM05D000169 ORTHO05D003054 1.3e-07 60.1 101 41.6
Lj3g0021279 Lotus japonicus HOM05D000169 ORTHO05D003054 1.3e-07 60.1 67 53.7
MD11G1145900 Malus domestica HOM05D000169 ORTHO05D003054 1.3e-07 60.1 101 41.6
Sp6g03840 Schrenkiella parvula HOM05D000169 ORTHO05D003054 1.3e-07 60.1 101 39.6
BcaB01g01886 Brassica carinata HOM05D000169 ORTHO05D003054 1.7e-07 59.7 101 38.6
BcaB01g01887 Brassica carinata HOM05D000169 ORTHO05D003054 1.7e-07 59.7 101 37.6
BolC9t56095H Brassica oleracea HOM05D000169 ORTHO05D003054 1.7e-07 59.7 101 39.6
MD00G1033000 Malus domestica HOM05D000169 ORTHO05D003054 1.7e-07 59.7 101 38.6
CANSAT64G2841 Cannabis sativa HOM05D000169 ORTHO05D003054 2.2e-07 59.3 101 40.6
AUR62029207 Chenopodium quinoa HOM05D000169 ORTHO05D003054 2.2e-07 59.3 101 41.6
Lsat_1_v5_gn_6_43841 Lactuca sativa HOM05D000169 ORTHO05D003054 2.2e-07 59.3 102 38.2
SalBow2G2335 Salvia bowleyana HOM05D000169 ORTHO05D003054 2.2e-07 59.3 88 44.3
HanXRQChr02g0055431 Helianthus annuus HOM05D000169 ORTHO05D003054 2.8e-07 58.9 102 39.2
HPP92_026019 Vanilla planifolia HOM05D000169 ORTHO05D003054 3.7e-07 58.5 99 39.4
MBI18_g37146_MAGBIO Magnolia biondii HOM05D000169 ORTHO05D003054 4.8e-07 58.2 108 40.7
Ciclev10028139m.g Citrus clementina HOM05D000169 ORTHO05D003054 6.3e-07 57.8 99 37.4
Lj1C211G2 Lonicera japonica HOM05D000169 ORTHO05D003054 6.3e-07 57.8 101 38.6
TPR.G11634 Trifolium pratense HOM05D000169 ORTHO05D003054 6.3e-07 57.8 99 40.4
Atru.chr3.3542 Acer truncatum HOM05D000169 ORTHO05D003054 8.2e-07 57.4 101 34.7
Lsat_1_v5_gn_6_43901 Lactuca sativa HOM05D000169 ORTHO05D003054 8.2e-07 57.4 101 36.6
Phvul.005G131400 Phaseolus vulgaris HOM05D000169 ORTHO05D003054 8.2e-07 57.4 67 46.3
BcaC04g21380 Brassica carinata HOM05D000169 ORTHO05D003054 1.1e-06 57.0 102 40.2
A09p25590 Brassica napus HOM05D000169 ORTHO05D003054 1.1e-06 57.0 101 38.6
C09p32490 Brassica napus HOM05D000169 ORTHO05D003054 1.1e-06 57.0 102 40.2
BolC9t56093H Brassica oleracea HOM05D000169 ORTHO05D003054 1.1e-06 57.0 102 40.2
BraA09t38133Z Brassica rapa HOM05D000169 ORTHO05D003054 1.1e-06 57.0 101 38.6
CARHR252390 Cardamine hirsuta HOM05D000169 ORTHO05D003054 1.1e-06 57.0 101 38.6
Ciclev10029864m.g Citrus clementina HOM05D000169 ORTHO05D003054 1.1e-06 57.0 101 37.6
Psat5g280800 Pisum sativum HOM05D000169 ORTHO05D003054 1.1e-06 57.0 101 40.6
Glyma.13G323000 Glycine max HOM05D000169 ORTHO05D003054 1.4e-06 56.6 67 46.3
Aa31LG9G9290 Aethionema arabicum HOM05D000169 ORTHO05D003054 2.4e-06 55.8 101 39.6
HanXRQChr02g0055421 Helianthus annuus HOM05D000169 ORTHO05D003054 2.4e-06 55.8 102 38.2
Ca_01374_v3 Cicer arietinum L. HOM05D000169 ORTHO05D003054 3.1e-06 55.5 99 40.4
DCAR_006108 Daucus carota HOM05D000169 ORTHO05D003054 3.1e-06 55.5 101 41.6
arahy.Tifrunner.gnm1.ann1.BDR360 Arachis hypogaea HOM05D000169 ORTHO05D003054 5.3e-06 54.7 99 39.4
MBI18_g05884_MAGBIO Magnolia biondii HOM05D000169 ORTHO05D003054 6.9e-06 54.3 108 39.8


User provided reference genes

Program Settings