Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 1.8e-301 1038.5 523 100.0
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 8.2e-267 923.3 523 89.5
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 1.6e-249 865.9 526 85.0
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 1.4e-245 852.8 534 82.4
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 4.4e-244 847.8 530 82.6
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.0e-240 836.6 558 78.5
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.3e-240 835.5 560 78.0
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 8.6e-240 833.6 551 79.5
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 4.3e-239 831.2 520 80.2
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 2.1e-238 828.9 524 80.2
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 2.3e-237 825.5 520 80.0
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 3.4e-236 821.6 522 79.3
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 4.4e-236 821.2 495 82.0
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 5.8e-236 820.8 491 83.1
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 9.8e-236 820.1 519 79.6
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 1.3e-235 819.7 494 81.8
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.7e-235 819.3 525 78.9
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 4.9e-235 817.8 522 79.5
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 6.4e-235 817.4 494 81.4
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.1e-234 816.6 494 81.4
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 1.9e-234 815.8 461 86.8
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 1.2e-233 813.1 527 78.9
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 2.0e-233 812.4 502 79.7
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 6.0e-233 810.8 530 77.0
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 1.0e-232 810.1 490 81.8
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.0e-232 810.1 474 85.7
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 1.0e-232 810.1 461 86.3
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 5.0e-232 807.7 530 77.0
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 6.6e-232 807.4 516 77.9
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 8.6e-232 807.0 463 85.3
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.5e-231 806.2 477 84.1
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 2.5e-231 805.4 545 75.4
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 7.3e-231 803.9 464 84.3
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 1.2e-230 803.1 495 81.0
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 1.6e-230 802.7 477 82.8
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 2.1e-230 802.4 465 84.3
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 2.8e-230 802.0 461 86.1
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 3.6e-230 801.6 519 77.6
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 6.2e-230 800.8 525 81.1
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 1.1e-229 800.0 491 81.3
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 1.1e-229 800.0 516 78.1
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 1.4e-229 799.7 492 80.3
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 1.8e-229 799.3 486 81.7
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 1.8e-229 799.3 476 83.2
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 5.2e-229 797.7 459 85.6
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 2.0e-228 795.8 489 81.8
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 4.4e-228 794.7 487 79.5
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 5.8e-228 794.3 515 77.7
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 5.8e-228 794.3 514 76.5
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 1.3e-227 793.1 462 83.8
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 1.3e-227 793.1 531 77.8
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 2.9e-227 792.0 491 79.2
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 6.4e-227 790.8 512 77.1
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 6.4e-227 790.8 459 83.7
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 8.3e-227 790.4 468 82.5
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.9e-226 789.3 461 84.2
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 3.2e-226 788.5 474 81.9
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 3.2e-226 788.5 518 76.4
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 3.2e-226 788.5 526 75.5
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 5.4e-226 787.7 486 80.5
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 7.1e-226 787.3 461 83.3
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 1.6e-225 786.2 470 81.5
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 1.6e-225 786.2 464 82.8
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 2.1e-225 785.8 461 84.4
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 3.5e-225 785.0 518 75.9
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 1.7e-224 782.7 459 84.3
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 2.3e-224 782.3 516 76.4
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 2.3e-224 782.3 505 77.8
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 3.0e-224 781.9 528 74.8
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 3.0e-224 781.9 493 79.1
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 6.6e-224 780.8 494 78.5
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 7.3e-223 777.3 459 82.8
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.2e-222 776.5 500 76.8
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 1.1e-221 773.5 514 74.9
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 3.1e-221 771.9 464 80.6
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 6.8e-221 770.8 519 74.0
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 1.2e-220 770.0 507 75.1
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.5e-220 769.6 465 80.6
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 2.0e-220 769.2 478 78.7
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 3.4e-220 768.5 549 71.9
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 4.4e-220 768.1 460 80.4
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 4.4e-220 768.1 465 80.4
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 5.8e-220 767.7 502 76.3
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 9.9e-220 766.9 497 76.9
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 1.3e-219 766.5 514 73.9
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 8.4e-219 763.8 511 76.3
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.1e-218 763.5 515 74.2
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 1.4e-218 763.1 503 75.7
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 5.4e-218 761.1 503 75.3
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 5.4e-218 761.1 568 69.5
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 1.2e-217 760.0 477 78.6
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 3.5e-217 758.4 464 80.2
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 3.5e-217 758.4 499 75.4
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 4.6e-217 758.1 514 74.1
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 6.0e-217 757.7 518 74.7
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 6.0e-217 757.7 501 75.0
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 8.6e-216 753.8 539 71.6
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 1.2e-212 743.4 540 70.9
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 7.6e-212 740.7 522 73.0
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 7.1e-210 734.2 511 74.4
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 2.7e-209 732.3 522 71.5
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 6.0e-209 731.1 505 73.5
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 1.3e-208 729.9 463 77.3
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 1.4e-205 719.9 509 71.5
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 6.9e-205 717.6 492 72.6
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 7.6e-204 714.1 470 73.2
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 1.2e-201 706.8 398 89.7
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 9.6e-199 697.2 418 81.1
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 1.4e-197 693.3 456 73.0
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 1.8e-197 693.0 459 75.6
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 4.0e-197 691.8 414 81.2
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 9.0e-197 690.6 475 71.6
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.9e-194 682.9 465 73.3
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 2.4e-194 682.6 461 73.3
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 3.5e-193 678.7 451 78.0
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 2.3e-192 676.0 450 78.2
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 5.1e-192 674.9 451 78.0
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 1.3e-190 670.2 446 74.4
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 1.9e-186 656.4 373 84.7
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 5.5e-186 654.8 494 70.0
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 5.5e-186 654.8 373 84.5
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 8.7e-184 647.5 493 66.7
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 4.1e-181 638.6 452 66.6
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 1.7e-179 633.3 742 50.0
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 1.7e-174 616.7 425 72.0
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 8.2e-174 614.4 453 70.9
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 3.8e-171 605.5 493 63.1
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 8.0e-161 571.2 373 79.6
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 7.0e-157 558.1 405 73.8
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 8.0e-121 438.3 371 63.9
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 5.0e-115 419.1 265 80.0
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 1.4e-112 411.0 237 85.2
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 6.2e-105 385.6 292 67.1
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 9.9e-95 351.7 245 73.9
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 2.1e-92 344.0 453 40.8
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 4.8e-89 332.8 470 38.5
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 2.2e-86 323.9 453 39.1
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 7.1e-85 318.9 201 77.1
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 1.4e-77 294.7 231 65.4
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 2.4e-64 250.8 384 42.7
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 2.2e-62 244.2 135 86.7
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 3.3e-58 230.3 202 62.9
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 2.2e-57 227.6 170 68.2
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 1.1e-53 215.3 165 67.9
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 2.5e-53 214.2 196 59.2
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 1.1e-45 188.7 132 68.9
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 4.2e-45 186.8 123 69.1
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 1.4e-43 181.8 249 43.4
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 2.3e-43 181.0 98 87.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.5e-42 178.3 373 31.6
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 4.5e-39 166.8 122 69.7
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 2.9e-38 164.1 91 86.8
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 1.7e-33 148.3 81 86.4
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 1.8e-32 144.8 93 79.6
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 5.9e-31 139.8 123 55.3
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 1.8e-27 128.3 100 66.0
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 2.0e-26 124.8 290 29.7
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 2.0e-26 124.8 74 81.1
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 2.0e-26 124.8 100 64.0
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 2.9e-14 84.3 57 66.7
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 1.2e-12 79.0 98 49.0
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 2.3e-11 74.7 47 72.3
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 2.3e-11 74.7 43 76.7
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 5.2e-11 73.6 41 78.0
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 4.1e-08 63.9 38 81.6
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 2.7e-07 61.2 35 77.1
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 3.9e-06 57.4 34 76.5


User provided reference genes

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