Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 6.0e-158 560.8 292 100.0
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 1.6e-123 446.4 291 80.1
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 4.4e-108 395.2 288 72.2
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 8.5e-104 380.9 292 66.1
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 2.5e-103 379.4 292 67.8
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 3.2e-103 379.0 254 73.2
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 4.2e-103 378.6 290 66.9
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 4.7e-102 375.2 289 65.1
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 8.0e-102 374.4 293 65.2
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 8.0e-102 374.4 293 65.9
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 1.0e-101 374.0 292 67.1
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 6.7e-101 371.3 292 64.0
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 2.0e-100 369.8 294 64.3
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 9.7e-100 367.5 298 63.4
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 9.7e-100 367.5 309 62.1
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 4.8e-99 365.2 304 63.8
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 7.0e-98 361.3 316 60.8
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 9.1e-98 360.9 292 62.7
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 2.0e-97 359.8 283 65.4
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 4.5e-97 358.6 316 59.8
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 5.9e-97 358.2 292 63.4
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 1.0e-96 357.5 291 63.2
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 1.3e-96 357.1 292 63.7
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 1.7e-96 356.7 278 66.2
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.9e-95 353.2 283 64.0
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 2.5e-95 352.8 288 61.8
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 2.5e-95 352.8 296 61.1
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 3.2e-95 352.4 292 62.3
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 1.2e-94 350.5 266 67.7
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 2.1e-94 349.7 283 63.6
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 2.1e-94 349.7 253 66.8
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 3.6e-94 349.0 293 64.2
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 4.7e-94 348.6 290 60.7
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 4.7e-94 348.6 297 59.3
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 1.8e-93 346.7 267 67.0
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 1.2e-92 344.0 281 63.7
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 2.6e-92 342.8 288 63.5
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 1.7e-91 340.1 288 62.8
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 1.7e-91 340.1 281 62.6
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 8.3e-91 337.8 293 62.1
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 2.4e-90 336.3 274 62.4
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 3.1e-90 335.9 300 58.7
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 1.6e-89 333.6 284 62.0
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 2.2e-88 329.7 292 56.8
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 2.9e-88 329.3 323 56.0
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 6.5e-88 328.2 290 57.2
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 7.2e-87 324.7 249 62.2
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 1.6e-86 323.6 262 61.5
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 2.7e-86 322.8 268 63.4
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 1.0e-85 320.9 252 64.3
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 1.8e-85 320.1 295 56.9
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 8.8e-85 317.8 261 59.0
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 1.2e-84 317.4 309 53.1
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.5e-84 317.0 290 57.6
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 2.0e-84 316.6 295 58.0
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 4.4e-84 315.5 292 54.1
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 7.5e-84 314.7 442 42.8
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 6.3e-83 311.6 250 60.0
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 2.4e-82 309.7 271 60.1
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 5.4e-82 308.5 261 56.3
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 9.2e-82 307.8 306 54.9
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 1.6e-81 307.0 250 59.2
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 4.5e-81 305.4 250 59.2
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 1.7e-80 303.5 304 52.0
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 3.8e-80 302.4 292 52.4
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 6.6e-80 301.6 270 58.5
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.5e-79 300.4 288 53.5
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.3e-79 299.3 285 55.1
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 5.6e-79 298.5 292 52.4
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 7.3e-79 298.1 244 57.8
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 9.5e-79 297.7 292 52.4
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 9.5e-79 297.7 278 59.0
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.6e-78 297.0 253 57.3
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 1.6e-78 297.0 264 59.5
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 2.8e-78 296.2 243 56.8
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 3.6e-78 295.8 310 51.6
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 3.6e-78 295.8 293 55.6
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 6.1e-78 295.0 291 52.6
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 1.0e-77 294.3 292 53.4
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.8e-77 293.5 293 54.6
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.8e-77 293.5 293 55.3
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.3e-77 293.1 253 56.9
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.3e-77 293.1 293 54.6
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 4.0e-77 292.4 311 50.2
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 5.2e-77 292.0 181 77.3
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 5.2e-77 292.0 293 54.6
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 5.2e-77 292.0 293 52.6
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 6.8e-77 291.6 305 51.1
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 8.9e-77 291.2 248 56.0
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 1.2e-76 290.8 248 55.6
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 1.2e-76 290.8 288 52.8
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 4.4e-76 288.9 296 51.0
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 1.3e-75 287.3 294 51.7
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 8.3e-75 284.6 303 49.2
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 9.2e-74 281.2 290 54.5
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 2.7e-73 279.6 250 55.2
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 5.9e-73 278.5 293 50.5
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 7.8e-73 278.1 250 54.8
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 1.7e-72 276.9 280 50.0
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 3.0e-72 276.2 288 51.0
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 3.9e-72 275.8 291 52.6
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 1.9e-71 273.5 250 52.0
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 4.3e-71 272.3 352 44.9
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 5.6e-71 271.9 341 44.9
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 1.0e-69 267.7 250 50.4
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 1.0e-69 267.7 250 50.4
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 8.3e-67 258.1 288 49.3
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 1.7e-64 250.4 220 59.5
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 5.0e-64 248.8 235 59.1
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 2.3e-61 240.0 290 44.5
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 4.0e-61 239.2 289 45.0
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 4.4e-60 235.7 174 67.2
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 1.6e-57 227.3 174 66.7
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 2.7e-57 226.5 242 51.7
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 2.3e-56 223.4 291 43.3
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 1.5e-55 220.7 209 55.5
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 1.9e-55 220.3 285 48.4
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 7.6e-52 208.4 140 73.6
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 7.3e-47 191.8 182 56.6
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 4.0e-45 186.0 181 56.9
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 2.9e-43 179.9 262 42.4
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.1e-42 177.9 247 42.5
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 2.1e-41 173.7 182 52.2
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 7.8e-41 171.8 183 49.2
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 1.1e-39 167.9 199 46.7
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.9e-39 167.2 291 36.4
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 1.6e-38 164.1 327 33.3
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.5e-36 157.5 124 62.1
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 3.4e-36 156.4 215 43.7
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 9.9e-36 154.8 103 69.9
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 2.2e-35 153.7 456 30.9
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 3.8e-35 152.9 132 56.8
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 2.7e-33 146.7 290 32.8
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 7.9e-33 145.2 204 39.7
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 3.3e-31 139.8 244 34.8
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 5.6e-31 139.0 165 46.1
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 4.8e-30 136.0 248 38.7
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 6.2e-30 135.6 178 43.3
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 2.9e-27 126.7 193 41.5
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 4.2e-26 122.9 259 31.3
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 5.5e-26 122.5 265 37.4
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.3e-24 117.9 86 65.1
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 1.1e-21 108.2 267 34.1
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 3.1e-21 106.7 145 41.4
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 2.2e-19 100.5 145 39.3
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 2.2e-19 100.5 145 39.3
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 6.5e-19 99.0 112 49.1
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 9.3e-18 95.1 65 69.2
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 9.3e-18 95.1 244 29.1
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 3.5e-17 93.2 65 67.7
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 1.5e-15 87.8 120 45.8
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 3.3e-15 86.7 61 67.2
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 9.7e-15 85.1 61 68.9
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 9.7e-15 85.1 130 43.1
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 8.2e-14 82.0 95 44.2
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 3.4e-12 76.6 70 60.0
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 5.9e-12 75.9 131 31.3
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 2.1e-09 67.4 38 76.3
BcaC02g09173 Brassica carinata HOM05D004374 ORTHO05D005430 5.1e-08 62.8 115 40.0
BraA09t40093Z Brassica rapa HOM05D004374 ORTHO05D005430 4.3e-07 59.7 52 53.8


User provided reference genes

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