Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 3.9e-248 860.9 409 100.0
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 1.3e-227 792.7 409 93.2
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 9.1e-221 770.0 409 89.7
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 8.3e-214 746.9 409 88.0
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 2.0e-204 715.7 412 87.1
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 3.1e-200 701.8 410 82.0
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.6e-199 698.7 410 81.5
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 5.8e-199 697.6 410 82.0
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.3e-198 696.4 410 81.2
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 3.3e-186 655.2 409 77.5
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 1.2e-183 646.7 408 74.0
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 7.1e-181 637.5 408 74.8
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.2e-180 636.7 408 74.5
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 4.6e-180 634.8 409 73.3
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 7.8e-180 634.0 407 73.0
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 7.8e-180 634.0 407 72.7
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.3e-179 633.3 407 74.2
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 5.1e-179 631.3 407 73.2
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 5.1e-179 631.3 407 73.2
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 3.3e-178 628.6 408 74.3
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 2.8e-177 625.5 407 72.0
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 4.7e-177 624.8 406 71.7
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 8.9e-176 620.5 409 72.6
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.5e-175 619.8 409 72.6
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 3.4e-175 618.6 407 69.8
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 5.8e-175 617.8 403 71.7
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.3e-174 616.7 405 71.4
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 4.9e-174 614.8 408 70.8
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 1.9e-173 612.8 400 72.5
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 7.1e-173 610.9 406 68.2
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 5.1e-171 604.7 407 71.0
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 1.1e-170 603.6 408 69.9
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 1.9e-170 602.8 413 70.9
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 7.3e-170 600.9 405 70.4
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 3.6e-169 598.6 407 69.8
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 1.8e-168 596.3 414 69.1
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.4e-168 595.9 391 72.9
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 5.3e-168 594.7 407 69.3
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 1.4e-165 586.6 404 70.3
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 9.3e-165 583.9 407 67.6
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.2e-164 583.6 407 66.6
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 4.6e-164 581.6 412 68.2
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 6.0e-164 581.3 410 68.8
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 6.6e-163 577.8 411 68.4
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 2.5e-162 575.9 411 67.6
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 2.5e-162 575.9 408 65.4
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 2.5e-162 575.9 407 65.6
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 5.6e-162 574.7 410 68.3
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 5.6e-162 574.7 412 67.7
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 9.6e-162 573.9 410 68.3
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 1.3e-161 573.5 410 68.3
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 1.6e-161 573.2 410 68.0
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 1.6e-161 573.2 410 68.0
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 2.1e-161 572.8 397 66.5
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 2.1e-161 572.8 407 66.1
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 3.6e-161 572.0 408 68.4
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 6.2e-161 571.2 411 67.2
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 8.1e-161 570.9 402 67.9
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 1.4e-160 570.1 409 66.7
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 1.8e-160 569.7 411 67.6
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 5.3e-160 568.2 402 66.9
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 9.0e-160 567.4 408 67.6
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.5e-159 566.6 395 66.6
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 3.4e-159 565.5 412 67.2
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 1.7e-158 563.1 402 64.9
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 2.2e-158 562.8 408 63.7
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 2.9e-158 562.4 407 63.6
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 4.9e-158 561.6 402 66.7
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 4.9e-158 561.6 407 65.8
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 1.4e-157 560.1 400 66.2
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 1.9e-157 559.7 407 63.9
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 3.2e-157 558.9 415 63.4
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 1.2e-156 557.0 407 63.1
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.6e-156 556.6 390 67.4
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.6e-156 556.6 390 67.4
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 2.7e-156 555.8 407 63.9
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 2.7e-156 555.8 407 65.8
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 3.5e-156 555.4 390 66.7
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 1.8e-155 553.1 391 64.7
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 2.3e-155 552.7 401 63.1
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 3.0e-155 552.4 407 61.7
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 5.1e-155 551.6 407 64.4
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 7.4e-154 547.7 400 63.5
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 9.6e-154 547.4 392 66.1
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 2.8e-153 545.8 400 65.0
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.8e-152 543.1 407 62.7
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 3.1e-152 542.3 395 63.8
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 6.9e-152 541.2 400 62.8
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 1.2e-151 540.4 395 63.8
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 1.5e-151 540.0 391 64.7
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 5.8e-151 538.1 397 62.7
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 2.9e-150 535.8 390 65.4
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 3.8e-150 535.4 402 64.4
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 6.4e-150 534.6 397 62.7
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 1.1e-149 533.9 399 61.2
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 3.2e-149 532.3 407 60.9
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 5.5e-149 531.6 399 61.9
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 5.5e-149 531.6 384 65.9
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 5.5e-149 531.6 384 65.9
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 2.7e-148 529.3 399 61.9
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 4.6e-148 528.5 409 64.1
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 6.0e-148 528.1 395 62.3
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 7.9e-148 527.7 410 62.4
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 2.3e-147 526.2 400 62.2
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 2.3e-147 526.2 411 61.8
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 5.1e-147 525.0 407 60.9
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 1.9e-146 523.1 400 59.8
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 2.5e-146 522.7 401 61.3
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 3.3e-146 522.3 391 62.9
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 9.6e-146 520.8 406 60.3
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 6.2e-145 518.1 409 60.6
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 5.8e-143 511.5 400 62.0
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 1.1e-138 497.3 395 58.2
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 1.9e-138 496.5 412 58.7
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 4.3e-138 495.4 401 58.4
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 1.3e-134 483.8 395 58.7
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.6e-132 476.9 415 57.6
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 7.4e-130 468.0 399 56.4
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 4.8e-129 465.3 395 55.7
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 8.8e-123 444.5 408 54.4
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 7.0e-120 434.9 405 53.1
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.2e-119 434.1 414 51.4
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 3.8e-118 429.1 411 52.3
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 8.0e-116 421.4 403 54.3
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.1e-114 417.5 414 50.5
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 8.2e-113 411.4 405 53.3
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.6e-111 407.1 378 54.0
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 9.4e-109 397.9 396 52.3
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 7.7e-103 378.3 410 48.0
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 3.2e-101 372.9 408 46.1
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 3.4e-98 362.8 416 48.3
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 4.5e-95 352.4 399 47.6
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 7.7e-95 351.7 407 48.4
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 2.8e-89 333.2 257 59.1
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 2.8e-89 333.2 409 41.8
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 3.5e-87 326.2 407 44.2
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 1.2e-82 311.2 407 43.0
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 7.0e-80 302.0 400 42.8
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 1.7e-78 297.4 397 42.3
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 8.6e-78 295.0 407 41.0
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.1e-77 294.7 235 64.7
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 4.0e-75 286.2 407 42.0
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 2.1e-60 237.3 163 68.7
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 3.6e-60 236.5 193 58.5
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 2.7e-55 220.3 437 32.3
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 1.9e-40 171.0 161 52.8
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 1.4e-35 154.8 125 60.0
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.4e-35 154.1 394 26.9
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 6.7e-30 136.0 95 66.3
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 5.7e-29 132.9 326 29.4
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 1.4e-27 128.3 78 73.1
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 9.4e-16 89.0 410 25.1
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.5e-10 71.6 40 77.5
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 8.5e-09 65.9 58 50.0
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 8.5e-09 65.9 47 57.4


User provided reference genes

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