Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 2.2e-229 798.5 379 100.0
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 1.4e-204 716.1 412 87.1
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 9.4e-204 713.4 405 86.9
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 8.5e-197 690.3 405 83.5
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 3.8e-189 664.8 405 81.2
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 7.5e-177 624.0 406 75.4
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.2e-176 622.5 406 75.1
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.8e-176 622.1 406 75.6
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 8.3e-176 620.5 406 74.9
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 8.6e-165 583.9 405 71.6
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 4.4e-161 571.6 404 68.6
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 1.7e-160 569.7 403 69.0
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 1.7e-160 569.7 403 69.0
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 3.7e-160 568.5 403 69.7
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 1.9e-159 566.2 403 68.2
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 7.0e-159 564.3 403 67.7
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 9.2e-159 563.9 405 68.1
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.7e-158 562.4 404 68.8
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.3e-157 560.1 404 68.3
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 2.3e-157 559.3 402 66.9
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 1.1e-156 557.0 403 67.0
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 2.5e-156 555.8 404 68.8
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 1.6e-155 553.1 403 65.0
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 5.2e-154 548.1 405 66.9
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 8.9e-154 547.4 402 66.7
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 1.5e-153 546.6 402 63.9
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.3e-152 543.5 399 66.2
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 2.9e-152 542.3 405 66.4
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 3.2e-151 538.9 404 65.1
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 2.7e-150 535.8 409 66.0
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 7.8e-150 534.3 396 65.7
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 2.3e-149 532.7 401 65.1
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 8.6e-149 530.8 403 64.5
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 7.3e-148 527.7 403 65.0
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.2e-147 526.9 403 64.0
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 1.1e-146 523.9 404 63.6
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 3.1e-146 522.3 406 64.0
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.2e-145 520.4 387 66.7
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 4.4e-145 518.5 408 63.2
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 1.3e-144 516.9 402 65.2
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 2.2e-144 516.2 407 63.6
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 2.9e-144 515.8 412 63.1
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 3.8e-144 515.4 407 62.9
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.4e-143 513.5 403 61.5
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 3.2e-143 512.3 408 63.0
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 5.4e-143 511.5 406 63.3
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 7.1e-143 511.1 403 62.0
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 9.2e-143 510.8 406 63.3
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 1.2e-142 510.4 406 63.3
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 1.6e-142 510.0 406 63.1
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 1.6e-142 510.0 406 63.1
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 3.5e-142 508.8 404 63.6
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 3.5e-142 508.8 407 62.2
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 8.6e-141 504.2 403 60.8
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 1.1e-140 503.8 404 64.1
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 1.9e-140 503.1 404 60.4
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 1.9e-140 503.1 406 62.3
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 3.3e-140 502.3 408 62.3
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 4.3e-140 501.9 398 62.3
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 7.3e-140 501.1 407 62.4
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 2.8e-139 499.2 393 60.8
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 3.6e-139 498.8 406 60.1
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 1.4e-138 496.9 398 62.3
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 1.2e-137 493.8 403 58.3
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 2.0e-137 493.0 405 60.7
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 2.6e-137 492.7 398 61.6
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 3.4e-137 492.3 398 61.6
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 5.8e-137 491.5 403 59.1
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.3e-136 490.3 391 60.4
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 3.8e-136 488.8 386 61.7
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 3.8e-136 488.8 386 61.7
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 4.9e-136 488.4 403 57.8
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 1.1e-135 487.3 403 60.5
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 2.4e-135 486.1 397 57.9
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 3.2e-135 485.7 403 58.3
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 4.2e-135 485.3 387 60.2
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 5.4e-135 485.0 413 58.6
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 9.3e-135 484.2 404 57.2
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 9.3e-135 484.2 398 58.0
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 1.5e-132 476.9 404 56.7
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 2.5e-132 476.1 403 58.6
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 5.6e-132 474.9 396 57.6
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 7.3e-132 474.6 391 58.6
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 9.6e-132 474.2 389 60.7
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 2.1e-131 473.0 393 58.0
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 2.1e-131 473.0 389 59.4
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 2.1e-131 473.0 395 57.5
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 2.8e-131 472.6 387 60.5
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.1e-130 470.7 405 58.0
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 2.4e-130 469.5 393 58.0
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 3.1e-130 469.2 397 58.9
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 5.3e-130 468.4 396 56.8
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 9.0e-130 467.6 386 60.1
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 1.5e-129 466.8 405 59.3
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 1.3e-128 463.8 404 55.9
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 2.2e-128 463.0 391 57.3
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 2.2e-128 463.0 398 58.3
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 2.9e-128 462.6 391 57.0
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 8.4e-128 461.1 380 60.0
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 8.4e-128 461.1 380 60.0
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 3.2e-127 459.1 396 56.6
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 5.4e-127 458.4 404 55.9
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 1.6e-126 456.8 387 57.9
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 7.9e-126 454.5 398 56.5
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 1.8e-125 453.4 396 56.3
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 4.3e-124 448.7 404 55.7
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 5.6e-124 448.4 412 55.8
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 7.4e-124 448.0 397 56.4
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 1.3e-123 447.2 397 54.4
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 4.8e-123 445.3 411 55.7
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 8.1e-123 444.5 397 57.2
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 4.5e-121 438.7 410 54.4
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 5.5e-119 431.8 391 52.9
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 4.6e-118 428.7 397 53.1
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 8.2e-115 417.9 413 52.3
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 3.1e-114 416.0 394 53.8
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.1e-111 407.5 413 53.3
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 2.5e-111 406.4 395 52.4
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 3.3e-108 396.0 391 50.1
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.1e-103 380.9 407 50.9
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 3.6e-102 375.9 404 49.8
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 2.2e-99 366.7 411 48.4
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 4.8e-99 365.5 415 47.2
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 9.1e-98 361.3 401 50.6
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 8.5e-96 354.8 403 50.4
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 2.5e-95 353.2 377 50.9
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 4.2e-95 352.4 412 46.4
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 1.7e-91 340.5 391 48.3
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 2.3e-85 320.1 377 48.8
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 4.8e-83 312.4 414 44.7
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 5.3e-82 308.9 408 42.4
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 9.1e-82 308.1 408 42.6
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.9e-80 303.1 228 66.2
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 5.7e-76 288.9 377 43.8
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 4.1e-74 282.7 397 42.1
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 3.5e-73 279.6 408 39.0
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 5.2e-69 265.8 384 40.6
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 5.7e-68 262.3 261 51.0
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 1.4e-66 257.7 393 39.9
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 9.5e-63 245.0 156 71.2
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 6.1e-62 242.3 186 60.2
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 8.9e-61 238.4 386 38.6
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 3.4e-60 236.5 393 37.4
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 2.8e-54 216.9 389 37.8
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 7.8e-41 172.2 154 55.2
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 1.1e-37 161.8 429 29.8
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 2.6e-36 157.1 119 63.0
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.2e-25 121.7 303 29.4
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.7e-19 101.3 398 24.1
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 6.4e-19 99.4 98 56.1
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 1.9e-15 87.8 99 50.5
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 2.4e-10 70.9 40 77.5
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 2.1e-09 67.8 47 59.6
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 1.8e-08 64.7 58 50.0


User provided reference genes

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