Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 3.2e-242 841.3 402 100.0
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 1.7e-227 792.3 402 92.8
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 2.2e-227 792.0 409 93.2
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 2.0e-220 768.8 402 91.0
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 7.6e-204 713.8 403 83.9
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 2.9e-203 711.8 405 86.9
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 4.9e-203 711.1 403 83.9
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 1.1e-202 709.9 403 83.1
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.1e-202 709.9 403 83.1
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 1.0e-192 676.8 402 80.8
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 3.4e-188 661.8 401 75.8
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.6e-185 652.9 402 76.1
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 3.6e-185 651.7 400 75.8
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 1.0e-184 650.2 400 75.5
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.8e-184 649.4 400 76.8
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.1e-183 646.7 401 75.6
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 7.4e-183 644.0 400 75.2
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 7.4e-183 644.0 400 75.2
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.3e-182 643.3 401 75.1
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 2.8e-182 642.1 401 75.6
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 2.4e-181 639.0 399 73.9
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 4.1e-181 638.3 400 72.2
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 1.5e-180 636.3 400 73.8
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 4.5e-180 634.8 402 74.6
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 1.0e-179 633.6 401 73.1
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 8.5e-179 630.6 402 73.6
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.1e-178 630.2 396 73.5
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 1.4e-178 629.8 393 74.6
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 3.6e-177 625.2 399 72.9
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 1.0e-176 623.6 399 69.9
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 1.3e-174 616.7 400 72.5
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 2.8e-174 615.5 398 72.9
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.4e-173 613.2 400 72.0
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 2.4e-173 612.5 406 72.2
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 4.1e-173 611.7 401 70.8
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.2e-172 610.1 400 71.8
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 5.9e-172 607.8 384 74.0
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 2.5e-170 602.4 403 71.5
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 3.2e-170 602.1 404 71.8
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 5.5e-170 601.3 405 70.9
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 5.5e-170 601.3 399 71.9
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 2.7e-169 599.0 403 71.7
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 4.7e-169 598.2 403 71.7
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 6.1e-169 597.8 403 71.7
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 8.0e-169 597.4 404 70.5
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 8.0e-169 597.4 403 71.5
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 8.0e-169 597.4 403 71.5
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 2.3e-168 595.9 409 70.4
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 3.0e-168 595.5 405 70.6
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 8.8e-168 594.0 400 70.0
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 4.4e-167 591.7 404 69.8
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 2.8e-166 589.0 405 70.4
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 6.3e-166 587.8 401 70.3
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.1e-165 587.0 400 67.2
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 4.1e-165 585.1 404 70.0
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 1.2e-164 583.6 401 70.3
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 2.7e-164 582.4 395 69.6
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 4.5e-164 581.6 395 69.4
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 7.7e-164 580.9 400 67.0
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 3.8e-163 578.6 403 66.7
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.1e-162 577.0 390 67.4
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 1.9e-162 576.2 401 65.8
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 3.2e-162 575.5 403 68.7
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 7.2e-162 574.3 395 68.1
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 7.2e-162 574.3 395 67.8
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 9.4e-162 573.9 402 67.4
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 6.1e-161 571.2 383 70.0
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 6.1e-161 571.2 383 70.0
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 6.1e-161 571.2 395 65.6
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 1.0e-160 570.5 400 65.0
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 1.4e-160 570.1 384 67.7
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 4.0e-160 568.5 388 67.3
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 6.8e-160 567.8 401 64.1
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 1.5e-159 566.6 400 65.2
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 3.4e-159 565.5 394 64.5
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 7.5e-159 564.3 400 64.2
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 9.8e-159 563.9 400 67.0
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 2.8e-158 562.4 400 65.0
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 6.3e-158 561.2 400 65.2
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.8e-157 559.7 410 64.1
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 2.0e-156 556.2 384 68.0
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 2.7e-156 555.8 393 64.1
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 5.9e-156 554.7 388 66.0
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 1.7e-155 553.1 402 67.4
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 2.2e-155 552.7 386 68.4
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 2.9e-155 552.4 384 66.1
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 3.8e-155 552.0 390 65.1
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 8.5e-155 550.8 394 65.7
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 2.5e-154 549.3 388 64.9
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 2.5e-154 549.3 393 63.4
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 3.2e-154 548.9 390 65.1
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 3.2e-154 548.9 401 62.3
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 5.5e-154 548.1 392 63.5
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.2e-153 547.0 402 63.7
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.7e-153 545.8 377 68.4
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.7e-153 545.8 377 68.4
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 8.0e-153 544.3 383 66.8
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 6.8e-152 541.2 393 63.6
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 8.8e-152 540.8 401 62.1
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 1.5e-151 540.0 388 64.2
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 4.4e-151 538.5 393 63.6
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 7.5e-151 537.7 395 64.3
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 2.8e-150 535.8 384 64.8
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 3.7e-150 535.4 395 63.5
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 4.9e-150 535.0 394 63.5
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 6.3e-150 534.6 394 61.7
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 1.6e-148 530.0 401 61.8
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.3e-147 526.9 401 61.6
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 3.8e-147 525.4 409 60.9
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 6.6e-147 524.6 408 61.0
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 7.3e-146 521.2 394 63.5
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 1.8e-144 516.5 407 60.2
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 5.7e-143 511.5 388 60.1
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 2.9e-142 509.2 394 59.9
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 2.0e-140 503.1 410 58.8
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 1.0e-136 490.7 391 59.3
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.7e-134 483.4 410 59.0
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 9.2e-133 477.6 388 57.7
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 3.0e-131 472.6 392 57.7
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 4.6e-124 448.7 404 55.9
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 3.3e-122 442.6 412 52.9
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 3.6e-121 439.1 400 53.8
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 1.4e-120 437.2 408 54.2
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 4.9e-118 428.7 409 51.8
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 1.1e-117 427.6 398 55.5
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 2.7e-116 422.9 400 55.0
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 3.6e-113 412.5 375 55.5
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 5.4e-109 398.7 391 52.9
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 4.0e-104 382.5 405 47.9
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 1.2e-103 380.9 405 48.6
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.5e-98 364.0 400 50.8
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 1.5e-98 364.0 411 48.9
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 8.1e-97 358.2 394 47.5
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 4.6e-92 342.4 406 43.6
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 2.1e-89 333.6 400 46.0
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 2.8e-89 333.2 257 59.9
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 4.2e-85 319.3 400 43.8
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 9.6e-82 308.1 393 43.5
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 2.1e-81 307.0 400 42.8
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.8e-81 306.6 228 66.7
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 4.1e-80 302.8 391 42.2
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 9.3e-77 291.6 400 43.0
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 9.1e-64 248.4 156 71.8
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 1.3e-62 244.6 186 60.8
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 3.3e-58 229.9 432 33.6
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 7.5e-42 175.6 154 55.8
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 2.8e-36 157.1 119 63.0
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 4.7e-36 156.4 392 28.3
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.3e-30 138.3 319 29.8
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 1.7e-30 137.9 142 50.7
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 2.5e-29 134.0 96 64.6
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 4.0e-19 100.1 403 27.0
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 2.6e-10 70.9 40 77.5
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 2.2e-09 67.8 47 59.6
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 1.9e-08 64.7 58 50.0
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 7.8e-07 59.3 42 71.4


User provided reference genes

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