Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G423800 Prunus persica HOM05D001879 ORTHO05D007957 0.0e+00 1565.4 842 100.0
MD08G1085900 Malus domestica HOM05D001879 ORTHO05D007957 0.0e+00 1199.1 931 72.7
MD15G1071100 Malus domestica HOM05D001879 ORTHO05D007957 0.0e+00 1182.2 893 75.5
FvH4_2g33210 Fragaria vesca HOM05D001879 ORTHO05D007957 0.0e+00 1111.3 917 70.0
FAN27G1994 Fragaria x ananassa HOM05D001879 ORTHO05D007957 0.0e+00 1102.8 903 70.2
FAN20G0243 Fragaria x ananassa HOM05D001879 ORTHO05D007957 0.0e+00 1099.7 907 70.1
RcHm_v2.0_Chr6g0309461 Rosa chinensis HOM05D001879 ORTHO05D007957 0.0e+00 1097.0 955 67.1
FAN15G2911 Fragaria x ananassa HOM05D001879 ORTHO05D007957 0.0e+00 1095.1 917 67.7
FAN24G3463 Fragaria x ananassa HOM05D001879 ORTHO05D007957 1.2e-299 1033.1 967 64.0
Cfa013682 Carpinus fangiana HOM05D001879 ORTHO05D007957 2.0e-286 989.2 898 63.4
QL12p037915 Quercus lobata HOM05D001879 ORTHO05D007957 1.6e-280 969.5 898 62.9
CANSAT11G0135 Cannabis sativa HOM05D001879 ORTHO05D007957 1.0e-271 940.3 908 61.2
Gorai.002G135500 Gossypium raimondii HOM05D001879 ORTHO05D007957 1.4e-271 939.9 908 61.1
Potri.014G016900 Populus trichocarpa HOM05D001879 ORTHO05D007957 1.7e-269 932.9 906 59.6
CiPaw.07G175800 Carya illinoinensis HOM05D001879 ORTHO05D007957 2.4e-268 929.1 875 60.5
Dinv44961 Davidia involucrata HOM05D001879 ORTHO05D007957 7.0e-268 927.5 792 64.5
Gohir.D01G110700 Gossypium hirsutum HOM05D001879 ORTHO05D007957 2.0e-267 926.0 921 60.6
Gohir.A01G122900 Gossypium hirsutum HOM05D001879 ORTHO05D007957 3.5e-267 925.2 918 60.2
TWI56G1363 Tripterygium wilfordii HOM05D001879 ORTHO05D007957 2.3e-263 912.5 928 56.5
Hma1.2p1_0210F.1_g089520 Hydrangea macrophylla HOM05D001879 ORTHO05D007957 9.2e-260 900.6 892 59.2
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 4.3e-257 891.7 760 64.7
GSVIVG01009355001 Vitis vinifera HOM05D001879 ORTHO05D007957 2.8e-256 889.0 835 59.9
VMungo1309G0716 Vigna mungo HOM05D001879 ORTHO05D007957 6.2e-256 887.9 887 58.5
Lalb_Chr11g0062861 Lupinus albus HOM05D001879 ORTHO05D007957 4.4e-254 881.7 892 58.1
Glyma.04G045100 Glycine max HOM05D001879 ORTHO05D007957 5.8e-254 881.3 886 57.8
Sabra14G0010700 Salix brachista HOM05D001879 ORTHO05D007957 1.4e-252 876.7 919 56.9
Ca_15906_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007957 2.4e-252 875.9 883 57.8
Manes.05G181300 Manihot esculenta HOM05D001879 ORTHO05D007957 5.4e-252 874.8 879 57.8
Phvul.009G071000 Phaseolus vulgaris HOM05D001879 ORTHO05D007957 1.3e-250 870.2 885 57.4
Lj1g0023876 Lotus japonicus HOM05D001879 ORTHO05D007957 3.9e-250 868.6 890 57.3
arahy.Tifrunner.gnm1.ann1.0Z12M9 Arachis hypogaea HOM05D001879 ORTHO05D007957 2.1e-248 862.8 891 56.9
arahy.Tifrunner.gnm1.ann1.D4I9HU Arachis hypogaea HOM05D001879 ORTHO05D007957 2.1e-248 862.8 884 57.4
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 4.7e-248 861.7 865 58.6
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 6.2e-248 861.3 893 55.8
CsaV3_4G035000 Cucumis sativus L. HOM05D001879 ORTHO05D007957 1.4e-247 860.1 891 56.3
Psat0s3943g0040 Pisum sativum HOM05D001879 ORTHO05D007957 5.2e-247 858.2 888 57.1
Glyma.06G045600 Glycine max HOM05D001879 ORTHO05D007957 9.9e-246 854.0 887 56.8
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 2.2e-245 852.8 892 57.0
Actinidia38101 Actinidia chinensis HOM05D001879 ORTHO05D007957 3.2e-244 849.0 890 55.6
ClCG05G020560 Citrullus lanatus HOM05D001879 ORTHO05D007957 6.0e-243 844.7 919 55.0
Eucgr.F02257 Eucalyptus grandis HOM05D001879 ORTHO05D007957 6.6e-242 841.3 895 56.4
Lj4A759G42 Lonicera japonica HOM05D001879 ORTHO05D007957 7.3e-241 837.8 891 56.0
Cpa.g.sc142.17 Carica papaya HOM05D001879 ORTHO05D007957 2.8e-240 835.9 893 57.8
Medtr3g103040 Medicago truncatula HOM05D001879 ORTHO05D007957 1.4e-239 833.6 896 55.7
Nitab4.5_0003803g0010 Nicotiana tabacum HOM05D001879 ORTHO05D007957 3.2e-236 822.4 895 54.6
Actinidia08249 Actinidia chinensis HOM05D001879 ORTHO05D007957 9.3e-236 820.8 811 58.6
Nn1g04585 Nelumbo nucifera HOM05D001879 ORTHO05D007957 1.2e-235 820.5 853 55.8
Cc10_g05700 Coffea canephora HOM05D001879 ORTHO05D007957 1.5e-233 813.5 899 53.9
vmacro22058 Vaccinium macrocarpon HOM05D001879 ORTHO05D007957 4.3e-233 812.0 939 52.3
CAN.G724.12 Capsicum annuum HOM05D001879 ORTHO05D007957 9.6e-233 810.8 790 57.5
Nitab4.5_0000164g0140 Nicotiana tabacum HOM05D001879 ORTHO05D007957 8.1e-232 807.7 894 53.6
Solyc04g077930.4 Solanum lycopersicum HOM05D001879 ORTHO05D007957 2.0e-230 803.1 839 56.1
Sopen04g031530 Solanum pennellii HOM05D001879 ORTHO05D007957 2.9e-229 799.3 839 55.8
TPR.G33684 Trifolium pratense HOM05D001879 ORTHO05D007957 1.6e-224 783.5 934 51.9
Hund05306 Selenicereus undatus HOM05D001879 ORTHO05D007957 6.9e-223 778.1 940 48.5
THA.LOC104812592 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 8.4e-221 771.2 889 53.7
Thhalv10006764m.g Eutrema salsugineum HOM05D001879 ORTHO05D007957 2.5e-220 769.6 824 53.6
Sp1g23990 Schrenkiella parvula HOM05D001879 ORTHO05D007957 2.5e-220 769.6 818 54.3
SalBow6G3417 Salvia bowleyana HOM05D001879 ORTHO05D007957 5.5e-220 768.5 896 53.7
THA.LOC104820515 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 2.7e-219 766.1 828 54.1
AL1G41290 Arabidopsis lyrata HOM05D001879 ORTHO05D007957 6.7e-218 761.5 827 53.0
AT1G27752 Arabidopsis thaliana HOM05D001879 ORTHO05D007957 4.3e-217 758.8 831 53.2
EL10Ac1g02390 Beta vulgaris HOM05D001879 ORTHO05D007957 2.4e-215 753.1 894 49.6
AUR62038791 Chenopodium quinoa HOM05D001879 ORTHO05D007957 1.5e-214 750.4 898 49.0
Aqoxy6G02668 Aquilegia oxysepala HOM05D001879 ORTHO05D007957 2.6e-214 749.6 841 52.0
A08p26070 Brassica napus HOM05D001879 ORTHO05D007957 3.4e-214 749.2 795 54.3
Migut.N02775 Erythranthe guttata HOM05D001879 ORTHO05D007957 3.4e-214 749.2 809 54.6
BraA08t34557Z Brassica rapa HOM05D001879 ORTHO05D007957 5.9e-214 748.4 794 54.0
Carub.0001s2627 Capsella rubella HOM05D001879 ORTHO05D007957 3.8e-213 745.7 803 53.7
Oeu057374.1 Olea europaea HOM05D001879 ORTHO05D007957 3.8e-213 745.7 828 53.0
AUR62037429 Chenopodium quinoa HOM05D001879 ORTHO05D007957 1.4e-212 743.8 823 51.4
C03p74580 Brassica napus HOM05D001879 ORTHO05D007957 4.6e-211 738.8 797 53.5
Sc26g0004180 Simmondsia chinensis HOM05D001879 ORTHO05D007957 7.9e-211 738.0 888 50.7
BolC3t19706H Brassica oleracea HOM05D001879 ORTHO05D007957 8.7e-210 734.6 806 52.9
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 3.3e-209 732.6 900 47.9
Aa31sc113G40 Aethionema arabicum HOM05D001879 ORTHO05D007957 4.3e-209 732.3 810 53.1
HanXRQChr01g0027941 Helianthus annuus HOM05D001879 ORTHO05D007957 5.7e-209 731.9 901 51.8
PSO675G4263 Papaver somniferum HOM05D001879 ORTHO05D007957 2.6e-206 723.0 799 53.1
PSO541G1802 Papaver somniferum HOM05D001879 ORTHO05D007957 1.1e-204 717.6 795 51.9
SGA_v2.0_scaffold152G36803 Striga asiatica HOM05D001879 ORTHO05D007957 5.0e-197 692.2 806 51.6
SalBow8G5177 Salvia bowleyana HOM05D001879 ORTHO05D007957 1.8e-194 683.7 880 50.5
BcaC01g01572 Brassica carinata HOM05D001879 ORTHO05D007957 4.4e-193 679.1 806 50.6
ECA246G2822 Erigeron canadensis HOM05D001879 ORTHO05D007957 1.9e-188 663.7 777 51.5
Thecc.08G089900 Theobroma cacao HOM05D001879 ORTHO05D007957 6.7e-186 655.2 681 59.2
CDE02G0795 Ceratophyllum demersum HOM05D001879 ORTHO05D007957 1.4e-183 647.5 731 50.8
unitig_578.g16146 Utricularia gibba HOM05D001879 ORTHO05D007957 7.0e-183 645.2 774 49.4
ATR0208G030 Amborella trichopoda HOM05D001879 ORTHO05D007957 1.3e-181 641.0 826 46.5
PGSC0003DMG400021524 Solanum tuberosum HOM05D001879 ORTHO05D007957 3.4e-169 599.7 648 54.8
Sed0020869 Sechium edule HOM05D001879 ORTHO05D007957 8.3e-168 595.1 697 51.1
Os03g0205000 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007957 7.7e-166 588.6 771 48.2
Haze_22326 Corylus avellana HOM05D001879 ORTHO05D007957 2.9e-165 586.6 494 65.2
Zm00001eb007600 Zea mays HOM05D001879 ORTHO05D007957 5.2e-162 575.9 826 44.2
DCAR_009884 Daucus carota HOM05D001879 ORTHO05D007957 3.5e-158 563.1 779 46.7
HPP92_009537 Vanilla planifolia HOM05D001879 ORTHO05D007957 6.2e-155 552.4 748 47.1
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 1.7e-149 534.3 472 62.7
MD03G1160700 Malus domestica HOM05D001879 ORTHO05D007957 5.6e-148 529.3 411 70.8
TAR381G0637 Trochodendron aralioides HOM05D001879 ORTHO05D007957 1.4e-146 524.6 481 60.5
CARHR027270 Cardamine hirsuta HOM05D001879 ORTHO05D007957 5.8e-145 519.2 581 51.5
Peaxi162Scf00081g00176 Petunia axillaris HOM05D001879 ORTHO05D007957 5.6e-140 502.7 516 55.6
Lsat_1_v5_gn_6_112340 Lactuca sativa HOM05D001879 ORTHO05D007957 1.1e-138 498.4 895 40.9
CSS0023334 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 3.0e-133 480.3 408 62.0
Mapoly0067s0042 Marchantia polymorpha HOM05D001879 ORTHO05D007957 2.6e-97 360.9 735 35.5
TAR381G1515 Trochodendron aralioides HOM05D001879 ORTHO05D007957 2.2e-91 341.3 378 53.7
SHI08396 Sapria himalayana HOM05D001879 ORTHO05D007957 8.8e-85 319.3 565 40.7
Haze_22325 Corylus avellana HOM05D001879 ORTHO05D007957 5.3e-82 310.1 219 74.4
Pp3c2_23190 Physcomitrium patens HOM05D001879 ORTHO05D007957 9.4e-79 299.3 1000 29.7
CANSAT25G3038 Cannabis sativa HOM05D001879 ORTHO05D007957 8.5e-72 276.2 222 67.6
AagrBONN_evm.TU.Sc2ySwM_362.2893 Anthoceros agrestis HOM05D001879 ORTHO05D007957 1.4e-69 268.9 565 32.0
CBR_g57086 Chara braunii HOM05D001879 ORTHO05D007957 1.4e-69 268.9 1092 28.4
SMO347G0602 Selaginella moellendorffii HOM05D001879 ORTHO05D007957 1.7e-67 261.9 808 29.3
BraA09t40950Z Brassica rapa HOM05D001879 ORTHO05D007957 2.1e-54 218.4 151 72.2
SEGI_28261 Sequoiadendron giganteum HOM05D001879 ORTHO05D007957 1.7e-48 198.7 274 44.9
Atru.chr13.821 Acer truncatum HOM05D001879 ORTHO05D007957 1.6e-46 192.2 251 56.6
CSS0041216 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 6.8e-37 160.2 201 48.8
Cfa000625 Carpinus fangiana HOM05D001879 ORTHO05D007957 5.0e-32 144.1 135 62.2
SHI08398 Sapria himalayana HOM05D001879 ORTHO05D007957 2.8e-22 111.7 213 37.1
HanXRQChr05g0145561 Helianthus annuus HOM05D001879 ORTHO05D007957 2.6e-20 105.1 63 74.6
Cfa010565 Carpinus fangiana HOM05D001879 ORTHO05D007957 2.2e-19 102.1 80 67.5
SHI08400 Sapria himalayana HOM05D001879 ORTHO05D007957 3.8e-19 101.3 103 56.3
MCO02G333 Micromonas commoda HOM05D001879 ORTHO05D007957 2.3e-16 92.0 707 25.9
HPP92_009536 Vanilla planifolia HOM05D001879 ORTHO05D007957 1.6e-14 85.9 139 41.7
Cre13.g568750 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007957 1.1e-10 73.2 66 56.1
C05p26450 Brassica napus HOM05D001879 ORTHO05D007957 2.7e-09 68.6 45 73.3
BolC5t31366H Brassica oleracea HOM05D001879 ORTHO05D007957 2.7e-09 68.6 45 73.3
AagrBONN_evm.TU.Sc2ySwM_368.1487 Anthoceros agrestis HOM05D001879 ORTHO05D007957 1.1e-07 63.2 106 39.6
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 9.6e-07 60.1 42 66.7


User provided reference genes

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