Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G394700 Prunus persica HOM05D008192 ORTHO05D010301 5.7e-78 294.3 158 100.0
MD08G1055700 Malus domestica HOM05D008192 ORTHO05D010301 8.0e-48 194.1 163 69.3
FvH4_2g41181 Fragaria vesca HOM05D008192 ORTHO05D010301 8.5e-42 174.1 163 63.2
MD15G1041800 Malus domestica HOM05D008192 ORTHO05D010301 4.2e-41 171.8 117 78.6
FAN20G1545 Fragaria x ananassa HOM05D008192 ORTHO05D010301 1.0e-39 167.2 164 61.0
FAN15G3555 Fragaria x ananassa HOM05D002088 ORTHO05D002204 2.3e-39 166.0 164 61.0
RcHm_v2.0_Chr6g0299341 Rosa chinensis HOM05D008192 ORTHO05D010301 3.0e-39 165.6 163 62.6
Dinv08187 Davidia involucrata HOM05D008192 ORTHO05D010301 8.6e-34 147.5 172 53.5
QL02p018787 Quercus lobata HOM05D008192 ORTHO05D010301 2.1e-32 142.9 168 53.0
Cfa013043 Carpinus fangiana HOM05D008192 ORTHO05D010301 9.8e-30 134.0 169 50.9
FAN27G3331 Fragaria x ananassa HOM05D002088 ORTHO05D002204 1.3e-29 133.7 120 65.0
Haze_21404 Corylus avellana HOM05D008192 ORTHO05D010301 2.2e-29 132.9 170 50.6
Duzib187G1399 Durio zibethinus HOM05D008192 ORTHO05D010301 1.0e-26 124.0 168 47.0
GSVIVG01035976001 Vitis vinifera HOM05D008192 ORTHO05D010301 3.0e-26 122.5 181 47.5
Actinidia10524 Actinidia chinensis HOM05D008192 ORTHO05D010301 8.6e-26 120.9 161 47.2
CSS0005628 Camellia sinensis var. sinensis HOM05D008192 ORTHO05D010301 1.5e-25 120.2 179 47.5
CSS0017566 Camellia sinensis var. sinensis HOM05D008192 ORTHO05D010301 1.5e-25 120.2 179 47.5
Duzib168G0610 Durio zibethinus HOM05D008192 ORTHO05D010301 2.5e-25 119.4 170 48.2
Ciclev10009717m.g Citrus clementina HOM05D008192 ORTHO05D010301 2.8e-24 115.9 172 48.8
Hma1.2p1_0389F.1_g142520 Hydrangea macrophylla HOM05D008192 ORTHO05D010301 2.6e-22 109.4 172 45.3
TAR383G0583 Trochodendron aralioides HOM05D003759 ORTHO05D004149 5.8e-22 108.2 193 41.5
Hma1.2p1_1685F.1_g297470 Hydrangea macrophylla HOM05D008192 ORTHO05D010301 1.3e-21 107.1 172 45.3
Atru.chr7.2557 Acer truncatum HOM05D008192 ORTHO05D010301 4.9e-21 105.1 170 46.5
Sabra06G0207000 Salix brachista HOM05D008192 ORTHO05D010301 4.9e-21 105.1 157 44.6
Thecc.09G015000 Theobroma cacao HOM05D008192 ORTHO05D010301 1.4e-20 103.6 173 45.7
Gohir.A06G102100 Gossypium hirsutum HOM05D008192 ORTHO05D010301 2.4e-20 102.8 170 44.1
Cpa.g.sc148.20 Carica papaya HOM05D008192 ORTHO05D010301 9.2e-20 100.9 170 40.0
CiPaw.07G230700 Carya illinoinensis HOM05D008192 ORTHO05D010301 1.6e-19 100.1 145 44.8
Cc04_g10610 Coffea canephora HOM05D008192 ORTHO05D010301 4.6e-19 98.6 162 40.1
COL.COLO4_18958 Corchorus olitorius HOM05D003327 ORTHO05D010301 1.3e-18 97.1 162 43.8
SalBow4G3126 Salvia bowleyana HOM05D008192 ORTHO05D010301 1.1e-17 94.0 158 39.2
Dinv13414 Davidia involucrata HOM05D008192 ORTHO05D010301 1.5e-17 93.6 115 48.7
Gohir.A05G060200 Gossypium hirsutum HOM05D008192 ORTHO05D010301 1.5e-17 93.6 169 42.6
Gorai.010G119200 Gossypium raimondii HOM05D008192 ORTHO05D010301 3.3e-17 92.4 170 42.9
Gohir.D06G104100 Gossypium hirsutum HOM05D008192 ORTHO05D010301 4.3e-17 92.0 170 42.4
Glyma.17G223700 Glycine max HOM05D008192 ORTHO05D010301 1.6e-16 90.1 143 40.6
TAR625G0365 Trochodendron aralioides HOM05D003759 ORTHO05D004149 1.6e-16 90.1 195 40.0
Gorai.009G063500 Gossypium raimondii HOM05D008192 ORTHO05D010301 2.1e-16 89.7 169 42.6
MSTRG.11783 Avicennia marina HOM05D008192 ORTHO05D010301 2.8e-16 89.4 167 36.5
Actinidia22286 Actinidia chinensis HOM05D008192 ORTHO05D010301 4.0e-15 85.5 118 45.8
MBI15_g18234_MAGBIO Magnolia biondii HOM05D003759 ORTHO05D004149 5.2e-15 85.1 184 37.5
arahy.Tifrunner.gnm1.ann1.D8U9UB Arachis hypogaea HOM05D008192 ORTHO05D010301 6.8e-15 84.7 164 37.8
CANSAT25G1276 Cannabis sativa HOM05D008192 ORTHO05D010301 6.8e-15 84.7 157 42.0
AUR62024800 Chenopodium quinoa HOM05D008192 ORTHO05D010301 2.0e-14 83.2 157 38.2
Sc09g0010700 Simmondsia chinensis HOM05D008192 ORTHO05D010301 2.0e-14 83.2 160 40.0
Duzib150G1248 Durio zibethinus HOM05D008192 ORTHO05D010301 7.5e-14 81.3 171 40.4
Migut.A00360 Erythranthe guttata HOM05D008192 ORTHO05D010301 7.5e-14 81.3 144 41.7
AUR62032421 Chenopodium quinoa HOM05D008192 ORTHO05D010301 1.3e-13 80.5 159 37.1
Ah.10g025590 Amaranthus hybridus HOM05D008192 ORTHO05D010301 2.9e-13 79.3 162 36.4
Lalb_Chr24g0401951 Lupinus albus HOM05D008192 ORTHO05D010301 8.3e-13 77.8 152 36.8
Manes.03G008000 Manihot esculenta HOM05D008192 ORTHO05D010301 8.3e-13 77.8 140 40.7
arahy.Tifrunner.gnm1.ann1.XVGB1U Arachis hypogaea HOM05D008192 ORTHO05D010301 1.9e-12 76.6 181 34.8
Nitab4.5_0010499g0010 Nicotiana tabacum HOM05D008192 ORTHO05D010301 1.9e-12 76.6 159 37.1
Oeu021912.1 Olea europaea HOM05D008192 ORTHO05D010301 1.9e-12 76.6 168 33.3
Potri.006G264900 Populus trichocarpa HOM05D008192 ORTHO05D010301 4.1e-12 75.5 84 50.0
EL10Ac2g02493 Beta vulgaris HOM05D008192 ORTHO05D010301 7.1e-12 74.7 167 34.1
Hund25618 Selenicereus undatus HOM05D008192 ORTHO05D010301 2.1e-11 73.2 148 35.1
DCAR_022864 Daucus carota HOM05D008192 ORTHO05D010301 6.0e-11 71.6 74 54.1
Gohir.D05G062401 Gossypium hirsutum HOM05D008192 ORTHO05D010301 1.7e-10 70.1 77 51.9
Actinidia24379 Actinidia chinensis HOM05D003759 ORTHO05D004149 6.6e-10 68.2 151 35.8
Nitab4.5_0000264g0200 Nicotiana tabacum HOM05D008192 ORTHO05D010301 6.6e-10 68.2 109 41.3
Solyc08g006760.4 Solanum lycopersicum HOM05D008192 ORTHO05D010301 6.6e-10 68.2 160 35.6
Oeu032512.1 Olea europaea HOM05D008192 ORTHO05D010301 1.1e-09 67.4 73 46.6
SGA_v2.0_scaffold147G36345 Striga asiatica HOM05D008192 ORTHO05D010301 1.1e-09 67.4 155 32.3
Dinv42845 Davidia involucrata HOM05D003759 ORTHO05D004149 1.5e-09 67.0 109 40.4
Dinv43255 Davidia involucrata HOM05D003759 ORTHO05D004149 1.5e-09 67.0 109 40.4
Sopen08g002700 Solanum pennellii HOM05D008192 ORTHO05D010301 1.9e-09 66.6 160 36.2
Manes.16G130300 Manihot esculenta HOM05D008192 ORTHO05D010301 4.3e-09 65.5 137 37.2
Atru.chr7.24 Acer truncatum HOM05D003759 ORTHO05D004149 5.6e-09 65.1 101 42.6
GSVIVG01023625001 Vitis vinifera HOM05D003759 ORTHO05D004149 7.3e-09 64.7 116 42.2
Lalb_Chr13g0300821 Lupinus albus HOM05D003759 ORTHO05D004149 1.6e-08 63.5 122 41.0
Peaxi162Scf01286g00122 Petunia axillaris HOM05D008192 ORTHO05D010301 1.6e-08 63.5 139 31.7
PSO339G1361 Papaver somniferum HOM05D003759 ORTHO05D004149 2.1e-08 63.2 190 35.3
PSO384G1085 Papaver somniferum HOM05D003759 ORTHO05D004149 3.6e-08 62.4 188 35.1
Hund02985 Selenicereus undatus HOM05D008192 ORTHO05D010301 3.6e-08 62.4 179 33.5
Actinidia01426 Actinidia chinensis HOM05D003759 ORTHO05D004149 4.7e-08 62.0 79 44.3
Aqoxy7G03381 Aquilegia oxysepala HOM05D003759 ORTHO05D004149 6.2e-08 61.6 191 30.9
Sabra06G0139200 Salix brachista HOM05D003759 ORTHO05D004149 6.2e-08 61.6 97 41.2
CANSAT11G0712 Cannabis sativa HOM05D003759 ORTHO05D004149 1.1e-07 60.8 69 49.3
Dinv41366 Davidia involucrata HOM05D003759 ORTHO05D004149 1.1e-07 60.8 80 45.0
HanXRQChr03g0065561 Helianthus annuus HOM05D003759 ORTHO05D004149 1.4e-07 60.5 102 41.2
Haze_19170 Corylus avellana HOM05D003759 ORTHO05D004149 1.8e-07 60.1 113 38.1
Potri.018G105300 Populus trichocarpa HOM05D003759 ORTHO05D004149 1.8e-07 60.1 116 37.9
Cpa.g.sc46.168 Carica papaya HOM05D003759 ORTHO05D004149 3.1e-07 59.3 98 41.8
Peaxi162Scf00045g02027 Petunia axillaris HOM05D008192 ORTHO05D010301 3.1e-07 59.3 75 46.7
Sabra18G0089900 Salix brachista HOM05D003759 ORTHO05D004149 3.1e-07 59.3 97 40.2
SGA_v2.0_scaffold265G46100 Striga asiatica HOM05D003759 ORTHO05D004149 4.0e-07 58.9 137 35.8
SGA_v2.0_scaffold45G17024 Striga asiatica HOM05D003759 ORTHO05D004149 4.0e-07 58.9 84 38.1
C01p08320 Brassica napus HOM05D003759 ORTHO05D004149 5.2e-07 58.5 92 41.3
QL02p093514 Quercus lobata HOM05D003759 ORTHO05D004149 5.2e-07 58.5 124 36.3
BcaC09g51852 Brassica carinata HOM05D003759 ORTHO05D004149 6.8e-07 58.2 92 41.3
BolC1t00818H Brassica oleracea HOM05D003759 ORTHO05D004149 6.8e-07 58.2 92 41.3
A03p60150 Brassica napus HOM05D003759 ORTHO05D004149 8.9e-07 57.8 200 31.5
BraA03t15060Z Brassica rapa HOM05D003759 ORTHO05D004149 8.9e-07 57.8 200 31.5
Rhsim01G0028200 Rhododendron simsii HOM05D003759 ORTHO05D004149 8.9e-07 57.8 113 36.3
Sed0007247 Sechium edule HOM05D008192 ORTHO05D010301 8.9e-07 57.8 75 44.0
TWI32G1309 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 1.2e-06 57.4 117 38.5
Actinidia38668 Actinidia chinensis HOM05D003759 ORTHO05D004149 1.5e-06 57.0 105 36.2
Cfa020811 Carpinus fangiana HOM05D003759 ORTHO05D004149 1.5e-06 57.0 113 37.2
CAN.G1198.1 Capsicum annuum HOM05D008192 ORTHO05D010301 2.0e-06 56.6 143 33.6
Lsat_1_v5_gn_7_50020 Lactuca sativa HOM05D003759 ORTHO05D004149 2.0e-06 56.6 116 35.3
MD15G1151500 Malus domestica HOM05D003759 ORTHO05D004149 2.0e-06 56.6 97 37.1
HanXRQChr12g0357671 Helianthus annuus HOM05D003759 ORTHO05D004149 2.6e-06 56.2 99 36.4
Sopen06g014330 Solanum pennellii HOM05D000014 ORTHO05D010301 2.6e-06 56.2 138 35.5
DCAR_014806 Daucus carota HOM05D003759 ORTHO05D004149 4.4e-06 55.5 141 31.9
ECA234G4063 Erigeron canadensis HOM05D003759 ORTHO05D004149 4.4e-06 55.5 158 29.1
Gohir.A08G252100 Gossypium hirsutum HOM05D003759 ORTHO05D004149 4.4e-06 55.5 187 29.9
BcaNung02973 Brassica carinata HOM05D003759 ORTHO05D004149 5.8e-06 55.1 88 39.8
BcaNung04561 Brassica carinata HOM05D003759 ORTHO05D004149 5.8e-06 55.1 99 37.4
A01p07630 Brassica napus HOM05D003759 ORTHO05D004149 5.8e-06 55.1 207 29.0
A10p15270 Brassica napus HOM05D003759 ORTHO05D004149 5.8e-06 55.1 95 34.7
C07p58060 Brassica napus HOM05D000058 ORTHO05D000077 5.8e-06 55.1 71 43.7
BolC7t46265H Brassica oleracea HOM05D003759 ORTHO05D004149 5.8e-06 55.1 71 43.7
Ciclev10009224m.g Citrus clementina HOM05D003759 ORTHO05D004149 5.8e-06 55.1 97 38.1
Solyc12g009970.2 Solanum lycopersicum HOM05D003759 ORTHO05D004149 5.8e-06 55.1 136 35.3
BcaNung00572 Brassica carinata HOM05D003759 ORTHO05D004149 7.6e-06 54.7 71 45.1
BraA01t00706Z Brassica rapa HOM05D003759 ORTHO05D004149 7.6e-06 54.7 207 29.0
BraA10t43608Z Brassica rapa HOM05D003759 ORTHO05D004149 7.6e-06 54.7 95 34.7
Lj6g0003054 Lotus japonicus HOM05D003759 ORTHO05D004149 7.6e-06 54.7 92 42.4
Lalb_Chr12g0198751 Lupinus albus HOM05D003759 ORTHO05D004149 7.6e-06 54.7 106 40.6
TPR.G24855 Trifolium pratense HOM05D003759 ORTHO05D004149 7.6e-06 54.7 131 31.3
TWI63G0632 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 7.6e-06 54.7 113 36.3
MD15G1041300 Malus domestica HOM05D001167 ORTHO05D001054 9.9e-06 54.3 36 75.0
Phvul.003G155300 Phaseolus vulgaris HOM05D003759 ORTHO05D004149 9.9e-06 54.3 118 34.7


User provided reference genes

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