Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G353000 Prunus persica HOM05D004811 ORTHO05D006888 0.0e+00 1510.7 764 100.0
RcHm_v2.0_Chr7g0218051 Rosa chinensis HOM05D004811 ORTHO05D006888 0.0e+00 1301.6 771 85.6
FvH4_5g27050 Fragaria vesca HOM05D004811 ORTHO05D006888 0.0e+00 1275.0 757 85.1
FAN18G4560 Fragaria x ananassa HOM05D004811 ORTHO05D006888 0.0e+00 1250.7 762 83.3
FAN04G3268 Fragaria x ananassa HOM05D004811 ORTHO05D006888 0.0e+00 1242.3 783 81.5
Cfa018260 Carpinus fangiana HOM05D004811 ORTHO05D006888 0.0e+00 1229.9 766 81.1
CiPaw.16G007200 Carya illinoinensis HOM05D004811 ORTHO05D006888 0.0e+00 1228.4 767 81.0
FAN08G1445 Fragaria x ananassa HOM05D004811 ORTHO05D006888 0.0e+00 1228.4 802 79.4
Manes.14G160925 Manihot esculenta HOM05D004811 ORTHO05D006888 0.0e+00 1207.6 753 81.7
Atru.chr1.2074 Acer truncatum HOM05D004811 ORTHO05D006888 0.0e+00 1203.0 754 79.4
Dinv04542 Davidia involucrata HOM05D004811 ORTHO05D006888 0.0e+00 1198.0 754 80.6
GSVIVG01032296001 Vitis vinifera HOM05D004811 ORTHO05D006888 0.0e+00 1187.9 761 78.7
Thecc.10G126600 Theobroma cacao HOM05D004811 ORTHO05D006888 0.0e+00 1176.0 750 78.9
Duzib106G1219 Durio zibethinus HOM05D004811 ORTHO05D006888 0.0e+00 1170.6 764 77.7
TWI18G0824 Tripterygium wilfordii HOM05D004811 ORTHO05D006888 0.0e+00 1170.2 756 78.4
TAR636G1158 Trochodendron aralioides HOM05D004811 ORTHO05D006888 0.0e+00 1170.2 774 77.9
CSS0026504 Camellia sinensis var. sinensis HOM05D004811 ORTHO05D006888 0.0e+00 1159.8 726 79.3
COL.COLO4_04346 Corchorus olitorius HOM05D004811 ORTHO05D006888 0.0e+00 1159.4 751 78.3
Ciclev10011123m.g Citrus clementina HOM05D004811 ORTHO05D006888 0.0e+00 1157.5 755 76.7
Rhsim11G0174100 Rhododendron simsii HOM05D004811 ORTHO05D006888 0.0e+00 1145.6 758 76.4
CsaV3_4G031660 Cucumis sativus L. HOM05D004811 ORTHO05D006888 0.0e+00 1137.9 758 76.9
Gorai.N006700 Gossypium raimondii HOM05D004811 ORTHO05D006888 0.0e+00 1136.7 763 75.5
Nn4g25146 Nelumbo nucifera HOM05D004811 ORTHO05D006888 0.0e+00 1135.6 754 77.3
Gohir.D06G178500 Gossypium hirsutum HOM05D004811 ORTHO05D006888 0.0e+00 1134.4 763 75.4
Ca_04451_v3 Cicer arietinum L. HOM05D004811 ORTHO05D006888 0.0e+00 1132.9 760 77.0
Eucgr.K03557 Eucalyptus grandis HOM05D004811 ORTHO05D006888 0.0e+00 1128.6 751 74.4
Lj5C205G23 Lonicera japonica HOM05D004811 ORTHO05D006888 0.0e+00 1126.3 776 74.0
Glyma.19G064500 Glycine max HOM05D004811 ORTHO05D006888 0.0e+00 1125.5 772 75.1
vmacro10447 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 0.0e+00 1124.8 760 75.1
VMungo0464G0703 Vigna mungo HOM05D004811 ORTHO05D006888 0.0e+00 1124.8 763 75.2
Potri.003G106200 Populus trichocarpa HOM05D004811 ORTHO05D006888 0.0e+00 1122.8 751 75.2
Phvul.004G051000 Phaseolus vulgaris HOM05D004811 ORTHO05D006888 0.0e+00 1121.7 763 75.2
arahy.Tifrunner.gnm1.ann1.21VBB5 Arachis hypogaea HOM05D004811 ORTHO05D006888 0.0e+00 1120.9 761 75.2
Psat1g085480 Pisum sativum HOM05D004811 ORTHO05D006888 0.0e+00 1117.4 753 75.3
Sed0008285 Sechium edule HOM05D004811 ORTHO05D006888 0.0e+00 1115.1 757 74.6
Lalb_Chr06g0174221 Lupinus albus HOM05D004811 ORTHO05D006888 0.0e+00 1112.4 763 75.0
PSO339G3970 Papaver somniferum HOM05D004811 ORTHO05D006888 0.0e+00 1109.4 760 74.1
Lj2g0018835 Lotus japonicus HOM05D004811 ORTHO05D006888 0.0e+00 1108.6 749 74.8
Haze_17837 Corylus avellana HOM05D004811 ORTHO05D006888 0.0e+00 1105.5 766 75.3
arahy.Tifrunner.gnm1.ann1.BVJW9Q Arachis hypogaea HOM05D004811 ORTHO05D006888 0.0e+00 1105.1 780 73.3
PGR044G1247 Punica granatum HOM05D004811 ORTHO05D006888 0.0e+00 1104.0 754 74.7
Haze_17831 Corylus avellana HOM05D004811 ORTHO05D006888 0.0e+00 1103.6 766 75.2
MBI19_g06604_MAGBIO Magnolia biondii HOM05D004811 ORTHO05D006888 0.0e+00 1103.6 760 74.7
Gohir.A06G170700 Gossypium hirsutum HOM05D004811 ORTHO05D006888 0.0e+00 1099.7 763 73.4
Medtr6g026900 Medicago truncatula HOM05D004811 ORTHO05D006888 0.0e+00 1090.1 753 74.9
Sopen10g022210 Solanum pennellii HOM05D004811 ORTHO05D006888 0.0e+00 1088.2 754 73.7
Cc02_g18400 Coffea canephora HOM05D004811 ORTHO05D006888 0.0e+00 1087.4 753 73.2
Solyc10g050540.2 Solanum lycopersicum HOM05D004811 ORTHO05D006888 0.0e+00 1087.0 754 73.6
Oeu013671.1 Olea europaea HOM05D004811 ORTHO05D006888 0.0e+00 1075.1 767 70.8
Ah.02g115100 Amaranthus hybridus HOM05D004811 ORTHO05D006888 2.1e-311 1072.0 756 72.0
MSTRG.5372 Avicennia marina HOM05D004811 ORTHO05D006888 2.0e-309 1065.4 749 72.0
PSO384G3007 Papaver somniferum HOM05D004811 ORTHO05D006888 5.7e-309 1063.9 762 71.8
THA.LOC104812205 Tarenaya hassleriana HOM05D004811 ORTHO05D006888 2.7e-306 1055.0 753 72.6
Aqoxy1G00017 Aquilegia oxysepala HOM05D004811 ORTHO05D006888 1.3e-305 1052.7 762 71.7
FAN13G1880 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.6e-303 1045.8 637 84.0
Peaxi162Scf00003g01938 Petunia axillaris HOM05D004811 ORTHO05D006888 1.4e-302 1042.7 752 71.1
ECA240G1163 Erigeron canadensis HOM05D004811 ORTHO05D006888 2.4e-299 1031.9 765 69.5
EL10Ac5g11622 Beta vulgaris HOM05D004811 ORTHO05D006888 5.4e-299 1030.8 759 70.6
Sc16g0003300 Simmondsia chinensis HOM05D004811 ORTHO05D006888 5.0e-297 1024.2 763 70.5
vmacro02132 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 2.5e-296 1021.9 765 69.7
ATR0307G027 Amborella trichopoda HOM05D004811 ORTHO05D006888 4.2e-296 1021.1 773 68.3
Sp1g15840 Schrenkiella parvula HOM05D004811 ORTHO05D006888 5.5e-296 1020.8 752 69.9
Carub.0001s1749 Capsella rubella HOM05D004811 ORTHO05D006888 1.2e-293 1013.1 752 69.1
A08p30750 Brassica napus HOM05D004811 ORTHO05D006888 2.8e-292 1008.4 753 69.1
AL1G30120 Arabidopsis lyrata HOM05D004811 ORTHO05D006888 8.3e-292 1006.9 753 68.7
C08p18170 Brassica napus HOM05D004811 ORTHO05D006888 1.4e-291 1006.1 753 68.8
BolC8t49451H Brassica oleracea HOM05D004811 ORTHO05D006888 1.4e-291 1006.1 753 68.8
MELO3C008873.2 Cucumis melo HOM05D004811 ORTHO05D006888 7.0e-291 1003.8 753 69.3
MD09G1000100 Malus domestica HOM05D004811 ORTHO05D006888 1.6e-290 1002.7 527 92.4
Aa31LG10G8540 Aethionema arabicum HOM05D004811 ORTHO05D006888 2.7e-290 1001.9 753 68.7
HanXRQChr03g0072161 Helianthus annuus HOM05D004811 ORTHO05D006888 8.6e-289 996.9 767 67.9
BraA08t35006Z Brassica rapa HOM05D004811 ORTHO05D006888 1.9e-288 995.7 777 66.9
Thhalv10006915m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 5.6e-288 994.2 752 67.4
Migut.N01206 Erythranthe guttata HOM05D004811 ORTHO05D006888 9.5e-288 993.4 751 67.5
AT1G17760 Arabidopsis thaliana HOM05D004811 ORTHO05D006888 1.0e-286 989.9 753 67.6
Sabra03G0073000 Salix brachista HOM05D004811 ORTHO05D006888 1.0e-286 989.9 928 59.1
Nitab4.5_0000876g0200 Nicotiana tabacum HOM05D004811 ORTHO05D006888 9.8e-285 983.4 752 69.0
Lsat_1_v5_gn_9_108940 Lactuca sativa HOM05D004811 ORTHO05D006888 5.9e-282 974.2 772 67.5
CARHR018370 Cardamine hirsuta HOM05D004811 ORTHO05D006888 1.1e-280 969.9 758 66.0
BcaC07g38890 Brassica carinata HOM05D004811 ORTHO05D006888 3.3e-280 968.4 726 67.6
ClCG04G004820 Citrullus lanatus HOM05D004811 ORTHO05D006888 1.2e-279 966.5 679 74.1
QL02p036870 Quercus lobata HOM05D004811 ORTHO05D006888 1.2e-279 966.5 522 89.1
QL02p036407 Quercus lobata HOM05D004811 ORTHO05D006888 2.1e-279 965.7 518 89.8
Os12g0571900 Oryza sativa ssp. japonica HOM05D004811 ORTHO05D006888 5.4e-275 951.0 761 65.2
PSO210G5098 Papaver somniferum HOM05D004811 ORTHO05D006888 2.0e-274 949.1 757 65.7
DCAR_022066 Daucus carota HOM05D004811 ORTHO05D006888 5.6e-272 941.0 756 64.4
PSO210G4088 Papaver somniferum HOM05D004811 ORTHO05D006888 3.4e-269 931.8 751 64.7
PSO210G7430 Papaver somniferum HOM05D004811 ORTHO05D006888 7.1e-267 924.1 768 63.5
CDE09G0881 Ceratophyllum demersum HOM05D004811 ORTHO05D006888 1.6e-255 886.3 686 66.5
AUR62037093 Chenopodium quinoa HOM05D004811 ORTHO05D006888 2.6e-253 879.0 767 61.8
Actinidia00514 Actinidia chinensis HOM05D004811 ORTHO05D006888 4.3e-248 861.7 752 61.8
HPP92_012441 Vanilla planifolia HOM05D004811 ORTHO05D006888 1.8e-246 856.3 749 61.7
AUR62036481 Chenopodium quinoa HOM05D004811 ORTHO05D006888 1.2e-245 853.6 756 61.0
Psat2g043000 Pisum sativum HOM05D004811 ORTHO05D006888 3.8e-244 848.6 749 61.4
SEGI_25586 Sequoiadendron giganteum HOM05D004811 ORTHO05D006888 8.4e-236 820.8 762 57.0
Mapoly0001s0525 Marchantia polymorpha HOM05D004811 ORTHO05D006888 8.7e-233 810.8 832 52.5
SGA_v2.0_scaffold55G19835 Striga asiatica HOM05D004811 ORTHO05D006888 7.6e-229 797.7 637 63.9
RcHm_v2.0_Chr2g0146051 Rosa chinensis HOM05D004811 ORTHO05D006888 1.5e-221 773.5 758 57.5
Pp3c3_19050 Physcomitrium patens HOM05D004811 ORTHO05D006888 6.7e-217 758.1 830 49.6
FvH4_6g34990 Fragaria vesca HOM05D004811 ORTHO05D006888 5.9e-213 745.0 758 54.4
SMO356G0171 Selaginella moellendorffii HOM05D004811 ORTHO05D006888 5.9e-213 745.0 753 51.3
FAN05G0989 Fragaria x ananassa HOM05D004811 ORTHO05D006888 4.7e-210 735.3 751 53.8
FAN14G1986 Fragaria x ananassa HOM05D004811 ORTHO05D006888 3.0e-209 732.6 758 53.7
FAN09G3976 Fragaria x ananassa HOM05D004811 ORTHO05D006888 3.9e-209 732.3 750 54.0
unitig_8.g3575 Utricularia gibba HOM05D004811 ORTHO05D006888 9.1e-190 667.9 762 51.8
CBR_g19801 Chara braunii HOM05D004811 ORTHO05D006888 1.9e-187 660.2 648 52.2
AagrBONN_evm.TU.Sc2ySwM_362.2211 Anthoceros agrestis HOM05D004811 ORTHO05D006888 1.6e-186 657.1 716 50.0
Cpa.g.sc111.49 Carica papaya HOM05D004811 ORTHO05D006888 2.7e-173 613.2 334 86.8
Nitab4.5_0016907g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 5.8e-160 568.9 455 68.1
HPP92_028180 Vanilla planifolia HOM05D004811 ORTHO05D006888 2.0e-128 464.2 426 57.7
Zm00001eb287160 Zea mays HOM05D004811 ORTHO05D006888 1.1e-123 448.4 459 56.2
Hund15153 Selenicereus undatus HOM05D004811 ORTHO05D006888 2.8e-106 390.6 217 85.3
CAN.G606.11 Capsicum annuum HOM05D004811 ORTHO05D006888 1.5e-99 368.2 242 75.6
PRCOL_00007255 Prasinoderma coloniale HOM05D004811 ORTHO05D006888 2.1e-93 347.8 694 33.3
MCO07G203 Micromonas commoda HOM05D004811 ORTHO05D006888 3.7e-90 337.0 578 34.4
CAN.G606.10 Capsicum annuum HOM05D004811 ORTHO05D006888 2.4e-89 334.3 182 87.4
Cre12.g506050 Chlamydomonas reinhardtii HOM05D004811 ORTHO05D006888 1.2e-80 305.4 703 31.2
Sed0024483 Sechium edule HOM05D004811 ORTHO05D006888 3.8e-79 300.4 283 61.8
QL02p036387 Quercus lobata HOM05D004811 ORTHO05D006888 1.5e-75 288.5 242 68.6
QL02p036851 Quercus lobata HOM05D004811 ORTHO05D006888 3.3e-75 287.3 242 68.2
CAN.G606.9 Capsicum annuum HOM05D004811 ORTHO05D006888 1.5e-70 271.9 366 47.3
Nitab4.5_0009440g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 3.4e-59 234.2 135 83.0
HPP92_028179 Vanilla planifolia HOM05D004811 ORTHO05D006888 1.0e-55 222.6 167 66.5
Actinidia09194 Actinidia chinensis HOM05D004811 ORTHO05D006888 1.5e-51 208.8 132 79.5
TPR.G39924 Trifolium pratense HOM05D004811 ORTHO05D006888 1.7e-50 205.3 219 58.0
Sed0006977 Sechium edule HOM05D004811 ORTHO05D006888 1.3e-47 195.7 126 76.2
TPR.G33000 Trifolium pratense HOM05D004811 ORTHO05D006888 3.3e-46 191.0 107 82.2
Cpa.g.sc111.45 Carica papaya HOM05D004811 ORTHO05D006888 6.0e-40 170.2 181 59.1
Hund15156 Selenicereus undatus HOM05D004811 ORTHO05D006888 4.1e-33 147.5 163 57.7
Cpa.g.sc111.48 Carica papaya HOM05D004811 ORTHO05D006888 5.4e-33 147.1 109 68.8
Actinidia09197 Actinidia chinensis HOM05D004811 ORTHO05D006888 8.1e-29 133.3 141 51.1
SGA_v2.0_scaffold753G53552 Striga asiatica HOM05D004811 ORTHO05D006888 1.4e-20 105.9 129 55.0
Thhalv10029084m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 1.3e-18 99.4 68 70.6
SalBow3G0991 Salvia bowleyana HOM05D004811 ORTHO05D006888 8.4e-18 96.7 62 72.6
Actinidia09195 Actinidia chinensis HOM05D004811 ORTHO05D006888 3.2e-17 94.7 56 73.2
Mapoly0104s0010 Marchantia polymorpha HOM05D002279 ORTHO05D002644 1.9e-14 85.5 526 20.5
Actinidia09206 Actinidia chinensis HOM05D004811 ORTHO05D009793 2.5e-14 85.1 148 39.9
C03p50580 Brassica napus HOM05D004811 ORTHO05D017514 3.4e-11 74.7 112 41.1
C09p52830 Brassica napus HOM05D004811 ORTHO05D017514 3.4e-11 74.7 165 32.7
BolC3t17347H Brassica oleracea HOM05D004811 ORTHO05D017514 1.3e-10 72.8 112 42.9
BolC9t58149H Brassica oleracea HOM05D004811 ORTHO05D017514 1.3e-10 72.8 116 39.7
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 1.7e-10 72.4 574 19.7
HPP92_021812 Vanilla planifolia HOM05D002279 ORTHO05D002644 8.4e-10 70.1 520 21.0
BcaC04g19678 Brassica carinata HOM05D004811 ORTHO05D017514 1.4e-09 69.3 87 42.5
Gohir.A02G097201 Gossypium hirsutum HOM05D004811 ORTHO05D006888 2.4e-09 68.6 85 45.9
THA.LOC104826051 Tarenaya hassleriana HOM05D002279 ORTHO05D002644 1.6e-08 65.9 565 19.5
PSO541G4576 Papaver somniferum HOM05D000002 ORTHO05D000001 3.5e-08 64.7 58 50.0
Eucgr.K01429 Eucalyptus grandis HOM05D002279 ORTHO05D002644 6.0e-08 63.9 427 20.1
HPP92_019939 Vanilla planifolia HOM05D002279 ORTHO05D002644 6.0e-08 63.9 353 21.5
Os03g0210400 Oryza sativa ssp. japonica HOM05D002279 ORTHO05D002644 3.0e-07 61.6 481 21.6
Sed0000937 Sechium edule HOM05D004811 ORTHO05D044609 3.0e-07 61.6 45 68.9
Zm00001eb007090 Zea mays HOM05D002279 ORTHO05D002644 5.1e-07 60.8 504 21.2
Gohir.D01G069250 Gossypium hirsutum HOM05D004811 ORTHO05D006888 1.1e-06 59.7 58 50.0
ClCG04G004810 Citrullus lanatus HOM05D004811 ORTHO05D044609 2.5e-06 58.5 44 68.2
PGR119G1284 Punica granatum HOM05D002279 ORTHO05D002644 2.5e-06 58.5 401 20.2
Zm00001eb400490 Zea mays HOM05D002279 ORTHO05D002644 7.4e-06 57.0 128 28.1


User provided reference genes

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