Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G342100 Prunus persica HOM05D007280 ORTHO05D009108 8.8e-252 873.6 616 100.0
MD16G1008400 Malus domestica HOM05D007280 ORTHO05D009108 5.0e-170 602.1 437 73.0
MD13G1010900 Malus domestica HOM05D007280 ORTHO05D009108 7.2e-169 598.2 439 72.0
FvH4_4g36140 Fragaria vesca HOM05D007280 ORTHO05D009108 5.9e-163 578.6 433 71.4
FAN12G0470 Fragaria x ananassa HOM05D007280 ORTHO05D009108 7.7e-163 578.2 433 70.7
FAN07G2371 Fragaria x ananassa HOM05D007280 ORTHO05D009108 1.6e-160 570.5 433 70.7
Hma1.2p1_0319F.1_g123900 Hydrangea macrophylla HOM05D007280 ORTHO05D009108 4.4e-126 456.1 431 57.1
Thecc.09G239200 Theobroma cacao HOM05D007280 ORTHO05D009108 1.2e-123 448.0 416 57.7
Nn4g24834 Nelumbo nucifera HOM05D007280 ORTHO05D009108 3.5e-123 446.4 433 56.6
Cpa.g.sc2.97 Carica papaya HOM05D007280 ORTHO05D009108 2.3e-122 443.7 416 57.2
Cc11_g02870 Coffea canephora HOM05D007280 ORTHO05D009108 8.0e-120 435.3 430 54.0
Haze_01575 Corylus avellana HOM05D007280 ORTHO05D009108 1.4e-119 434.5 419 56.1
Potri.010G098700 Populus trichocarpa HOM05D007280 ORTHO05D009108 1.4e-119 434.5 421 57.2
Sabra08G0108200 Salix brachista HOM05D007280 ORTHO05D009108 5.7e-118 429.1 417 54.2
Cfa015100 Carpinus fangiana HOM05D007280 ORTHO05D009108 7.8e-115 418.7 410 55.6
Lj3P855T51 Lonicera japonica HOM05D007280 ORTHO05D009108 5.6e-113 412.5 382 55.0
Rhsim04G0168900 Rhododendron simsii HOM05D007280 ORTHO05D009108 9.5e-113 411.8 429 54.5
Phvul.003G013000 Phaseolus vulgaris HOM05D007280 ORTHO05D009108 2.3e-111 407.1 424 52.6
CSS0013384 Camellia sinensis var. sinensis HOM05D007280 ORTHO05D009108 2.6e-110 403.7 441 51.7
PGSC0003DMG400031369 Solanum tuberosum HOM05D007280 ORTHO05D009108 5.8e-110 402.5 441 52.2
Peaxi162Scf00329g00097 Petunia axillaris HOM05D007280 ORTHO05D009108 2.9e-109 400.2 397 52.4
HanXRQChr16g0526501 Helianthus annuus HOM05D007280 ORTHO05D009108 6.4e-109 399.1 447 48.1
Medtr1g033840 Medicago truncatula HOM05D007280 ORTHO05D009108 4.1e-108 396.4 438 50.2
Lj2g0005518 Lotus japonicus HOM05D007280 ORTHO05D009108 2.0e-107 394.0 422 50.5
RcHm_v2.0_Chr4g0445881 Rosa chinensis HOM05D007280 ORTHO05D009108 2.7e-107 393.7 433 55.2
Sabra08G0108600 Salix brachista HOM05D007280 ORTHO05D009108 1.3e-106 391.3 418 50.7
DCAR_023520 Daucus carota HOM05D007280 ORTHO05D009108 3.3e-105 386.7 420 50.2
VMungo1215G2162 Vigna mungo HOM05D007280 ORTHO05D009108 4.3e-105 386.3 416 51.0
Psat6g095680 Pisum sativum HOM05D007280 ORTHO05D009108 1.2e-104 384.8 423 50.8
Sopen04g003730 Solanum pennellii HOM05D007280 ORTHO05D009108 4.7e-104 382.9 426 51.4
CAN.G458.1 Capsicum annuum HOM05D007280 ORTHO05D009108 5.2e-103 379.4 449 48.3
Ca_12458_v3 Cicer arietinum L. HOM05D007280 ORTHO05D009108 6.8e-103 379.0 428 48.6
Solyc04g008570.4 Solanum lycopersicum HOM05D007280 ORTHO05D009108 6.8e-103 379.0 426 50.9
Lalb_Chr17g0338341 Lupinus albus HOM05D007280 ORTHO05D009108 8.9e-103 378.6 418 50.2
MSTRG.17728 Avicennia marina HOM05D007280 ORTHO05D009108 2.2e-101 374.0 441 48.5
Ciclev10004581m.g Citrus clementina HOM05D007280 ORTHO05D009108 6.4e-101 372.5 419 48.7
Eucgr.B02618 Eucalyptus grandis HOM05D007280 ORTHO05D009108 2.4e-100 370.5 424 48.1
Glyma.20G010600 Glycine max HOM05D007280 ORTHO05D009108 2.4e-100 370.5 370 53.2
TWI74G1184 Tripterygium wilfordii HOM05D007280 ORTHO05D009108 5.4e-100 369.4 409 49.6
Sabra10G0071200 Salix brachista HOM05D007280 ORTHO05D009108 1.2e-99 368.2 421 50.6
TPR.G35854 Trifolium pratense HOM05D007280 ORTHO05D009108 7.8e-99 365.5 423 47.0
Gohir.D06G095050 Gossypium hirsutum HOM05D007280 ORTHO05D009108 1.7e-98 364.4 437 47.6
Duzib168G0083 Durio zibethinus HOM05D007280 ORTHO05D009108 6.6e-98 362.5 412 48.8
Gohir.D09G108900 Gossypium hirsutum HOM05D007280 ORTHO05D009108 1.2e-94 351.7 426 47.4
THA.LOC104819105 Tarenaya hassleriana HOM05D007280 ORTHO05D009108 2.6e-94 350.5 386 47.9
Gorai.006G126500 Gossypium raimondii HOM05D007280 ORTHO05D009108 2.9e-93 347.1 421 46.3
Lsat_1_v5_gn_3_27640 Lactuca sativa HOM05D007280 ORTHO05D009108 6.4e-93 345.9 374 48.4
ECA246G2688 Erigeron canadensis HOM05D007280 ORTHO05D009108 5.4e-92 342.8 343 50.4
Potri.008G142900 Populus trichocarpa HOM05D007280 ORTHO05D009108 7.1e-92 342.4 418 47.6
Gohir.A09G112200 Gossypium hirsutum HOM05D007280 ORTHO05D009108 6.0e-91 339.3 371 49.1
QL03p041451 Quercus lobata HOM05D007280 ORTHO05D009108 8.6e-90 335.5 329 57.8
ClCG01G006970 Citrullus lanatus HOM05D007280 ORTHO05D009108 4.0e-87 326.6 322 54.7
PGR044G2110 Punica granatum HOM05D007280 ORTHO05D009108 1.2e-86 325.1 392 48.0
Manes.17G093400 Manihot esculenta HOM05D007280 ORTHO05D009108 9.9e-86 322.0 332 53.9
TAR622G0173 Trochodendron aralioides HOM05D007280 ORTHO05D009108 3.8e-85 320.1 326 53.1
Aa31sc65G20 Aethionema arabicum HOM05D007280 ORTHO05D009108 8.4e-85 318.9 407 44.7
GSVIVG01010259001 Vitis vinifera HOM05D007280 ORTHO05D009108 9.3e-84 315.5 359 50.7
Sed0008466 Sechium edule HOM05D007280 ORTHO05D009108 6.6e-82 309.3 319 53.3
SalBow3G1417 Salvia bowleyana HOM05D007280 ORTHO05D009108 8.7e-82 308.9 389 46.3
Thhalv10016019m.g Eutrema salsugineum HOM05D007280 ORTHO05D009108 1.5e-81 308.1 413 43.8
CsaV3_5G017390 Cucumis sativus L. HOM05D007280 ORTHO05D009108 2.8e-80 303.9 303 54.5
AL6G24390 Arabidopsis lyrata HOM05D007280 ORTHO05D009108 4.8e-80 303.1 372 45.2
AT5G13770 Arabidopsis thaliana HOM05D007280 ORTHO05D009108 3.1e-79 300.4 372 45.4
Glyma.07G177100 Glycine max HOM05D007280 ORTHO05D009108 1.7e-77 294.7 294 52.4
MELO3C027064.2 Cucumis melo HOM05D007280 ORTHO05D009108 3.2e-76 290.4 283 55.1
Carub.0006s1195 Capsella rubella HOM05D007280 ORTHO05D009108 1.2e-75 288.5 384 41.9
CiPaw.05G161600 Carya illinoinensis HOM05D007280 ORTHO05D009108 1.6e-75 288.1 326 50.0
Sp6g30250 Schrenkiella parvula HOM05D007280 ORTHO05D009108 3.5e-75 287.0 407 42.0
A02p02170 Brassica napus HOM05D007280 ORTHO05D009108 4.6e-75 286.6 405 42.2
C02p06420 Brassica napus HOM05D007280 ORTHO05D009108 6.0e-75 286.2 405 42.5
BolC2t06588H Brassica oleracea HOM05D007280 ORTHO05D009108 6.0e-75 286.2 405 42.5
BraA02t05191Z Brassica rapa HOM05D007280 ORTHO05D009108 7.9e-75 285.8 405 42.0
ATR0705G126 Amborella trichopoda HOM05D007280 ORTHO05D009108 1.3e-72 278.5 393 40.5
Ah.13g070140 Amaranthus hybridus HOM05D007280 ORTHO05D009108 1.6e-72 278.1 375 42.4
Migut.N02514 Erythranthe guttata HOM05D007280 ORTHO05D009108 4.8e-72 276.6 446 40.4
BcaNung04186 Brassica carinata HOM05D007280 ORTHO05D009108 3.1e-71 273.9 402 40.8
Dinv17118 Davidia involucrata HOM05D007280 ORTHO05D009108 5.3e-71 273.1 202 63.4
Oeu006355.1 Olea europaea HOM05D007280 ORTHO05D009108 7.1e-68 262.7 274 52.2
Os04g0583101 Oryza sativa ssp. japonica HOM05D007280 ORTHO05D009108 7.1e-68 262.7 385 38.4
COL.COLO4_36459 Corchorus olitorius HOM05D007280 ORTHO05D009108 1.2e-67 261.9 321 48.9
AUR62019383 Chenopodium quinoa HOM05D007280 ORTHO05D009108 1.6e-64 251.5 331 41.7
Lsat_1_v5_gn_4_26101 Lactuca sativa HOM05D007280 ORTHO05D009108 2.1e-64 251.1 338 42.0
Aqoxy3G04194 Aquilegia oxysepala HOM05D007280 ORTHO05D009108 2.8e-64 250.8 319 46.1
AUR62006107 Chenopodium quinoa HOM05D007280 ORTHO05D009108 1.4e-63 248.4 350 40.6
Zm00001eb072910 Zea mays HOM05D007280 ORTHO05D009108 1.4e-63 248.4 354 39.5
CDE08G0845 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 3.1e-63 247.3 341 42.5
GSVIVG01032336001 Vitis vinifera HOM05D007280 ORTHO05D009108 3.1e-63 247.3 257 54.1
PSO782G1316 Papaver somniferum HOM05D007280 ORTHO05D009108 5.8e-62 243.0 316 44.6
Nitab4.5_0000129g0410 Nicotiana tabacum HOM05D007280 ORTHO05D009108 7.1e-60 236.1 206 58.7
PSO063G1027 Papaver somniferum HOM05D007280 ORTHO05D009108 9.3e-60 235.7 317 41.6
Nitab4.5_0003882g0050 Nicotiana tabacum HOM05D007280 ORTHO05D009108 2.1e-59 234.6 205 59.5
MBI03_g37599_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 3.9e-58 230.3 386 38.3
Ah.07g205740 Amaranthus hybridus HOM05D007280 ORTHO05D009108 2.0e-54 218.0 362 36.7
CDE04G3512 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 2.1e-51 208.0 342 39.8
QL11p025101 Quercus lobata HOM05D007280 ORTHO05D009108 1.3e-50 205.3 205 54.1
Sc14g0006690 Simmondsia chinensis HOM05D007280 ORTHO05D009108 4.1e-47 193.7 221 43.9
Ciclev10006779m.g Citrus clementina HOM05D007280 ORTHO05D009108 5.3e-47 193.4 197 51.8
CARHR199670 Cardamine hirsuta HOM05D007280 ORTHO05D009108 1.3e-45 188.7 221 44.8
ECA234G4111 Erigeron canadensis HOM05D007280 ORTHO05D009108 5.3e-39 166.8 135 61.5
QL11p025168 Quercus lobata HOM05D007280 ORTHO05D009108 2.3e-34 151.4 114 60.5
Atru.chr11.1056 Acer truncatum HOM05D007280 ORTHO05D009108 1.5e-17 95.5 76 57.9
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 2.3e-10 71.6 248 20.6
FAN13G2388 Fragaria x ananassa HOM05D000001 ORTHO05D009144 4.0e-10 70.9 246 25.6
AagrBONN_evm.TU.Sc2ySwM_368.36 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.0e-09 68.6 292 22.9
RcHm_v2.0_Chr7g0192851 Rosa chinensis HOM05D000001 ORTHO05D009144 2.6e-09 68.2 275 24.4
AagrBONN_evm.TU.Sc2ySwM_228.2213 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.4e-09 67.4 273 22.7
THA.LOC104799057 Tarenaya hassleriana HOM05D000001 ORTHO05D010435 4.4e-09 67.4 226 25.2
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 7.5e-09 66.6 289 23.9
Gorai.008G216900 Gossypium raimondii HOM05D000001 ORTHO05D009335 1.3e-08 65.9 232 23.7
Gohir.D12G201900 Gossypium hirsutum HOM05D000001 ORTHO05D009335 1.7e-08 65.5 232 23.7
FvH4_5g21730 Fragaria vesca HOM05D000001 ORTHO05D009144 2.2e-08 65.1 246 25.6
Potri.012G135600 Populus trichocarpa HOM05D000001 ORTHO05D000003 2.8e-08 64.7 258 20.9
AL1G46010 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 3.7e-08 64.3 312 20.8
Gohir.A12G199200 Gossypium hirsutum HOM05D000001 ORTHO05D009335 3.7e-08 64.3 232 23.3
FAN18G0380 Fragaria x ananassa HOM05D000001 ORTHO05D009144 6.3e-08 63.5 246 25.2
MD03G1167900 Malus domestica HOM05D000001 ORTHO05D000003 6.3e-08 63.5 278 19.8
SGA_v2.0_scaffold25G10799 Striga asiatica HOM05D000001 ORTHO05D000003 8.3e-08 63.2 268 20.5
Sabra12G0102200 Salix brachista HOM05D000001 ORTHO05D000003 1.1e-07 62.8 189 24.9
PGSC0003DMG400031170 Solanum tuberosum HOM05D000300 ORTHO05D000383 1.1e-07 62.8 291 20.3
EL10Ac4g09353 Beta vulgaris HOM05D000001 ORTHO05D009582 1.4e-07 62.4 194 23.7
Medtr1g014340 Medicago truncatula HOM05D000001 ORTHO05D000003 1.8e-07 62.0 293 20.8
Prupe.5G192400 Prunus persica HOM05D000001 ORTHO05D000003 2.4e-07 61.6 273 22.0
PGR042G2334 Punica granatum HOM05D000001 ORTHO05D000003 2.4e-07 61.6 247 21.1
Cpa.g.sc4.211 Carica papaya HOM05D000001 ORTHO05D000003 3.1e-07 61.2 189 24.9
PSO063G5446 Papaver somniferum HOM05D000001 ORTHO05D000003 3.1e-07 61.2 306 20.6
DCAR_021661 Daucus carota HOM05D006569 ORTHO05D007515 4.1e-07 60.8 213 25.4
Lalb_Chr21g0317161 Lupinus albus HOM05D000001 ORTHO05D000003 4.1e-07 60.8 277 22.0
SEGI_01969 Sequoiadendron giganteum HOM05D002391 ORTHO05D003966 4.1e-07 60.8 156 26.3
CAN.G942.8 Capsicum annuum HOM05D000001 ORTHO05D000003 7.0e-07 60.1 204 25.0
CiPaw.04G159400 Carya illinoinensis HOM05D000001 ORTHO05D010435 7.0e-07 60.1 235 25.5
AUR62015757 Chenopodium quinoa HOM05D000001 ORTHO05D009857 7.0e-07 60.1 273 21.6
FAN22G2182 Fragaria x ananassa HOM05D007280 ORTHO05D009108 7.0e-07 60.1 35 82.9
Sp1g06320 Schrenkiella parvula HOM05D006354 ORTHO05D007773 7.0e-07 60.1 232 25.0
Hund15592 Selenicereus undatus HOM05D006569 ORTHO05D007515 7.0e-07 60.1 167 24.0
Solyc01g089870.3 Solanum lycopersicum HOM05D000300 ORTHO05D000383 7.0e-07 60.1 286 19.9
Nitab4.5_0007060g0020 Nicotiana tabacum HOM05D000300 ORTHO05D000383 9.2e-07 59.7 286 20.3
Sp7g20030 Schrenkiella parvula HOM05D003177 ORTHO05D003481 9.2e-07 59.7 213 23.5
Sopen01g035710 Solanum pennellii HOM05D000300 ORTHO05D000383 9.2e-07 59.7 286 19.9
Carub.0007s0221 Capsella rubella HOM05D000001 ORTHO05D000003 1.2e-06 59.3 190 24.7
CARHR007380 Cardamine hirsuta HOM05D006354 ORTHO05D007773 1.2e-06 59.3 232 25.4
Medtr7g082160 Medicago truncatula HOM05D008684 ORTHO05D010796 1.2e-06 59.3 294 20.7
Prupe.2G097100 Prunus persica HOM05D000001 ORTHO05D000003 1.2e-06 59.3 268 22.8
AagrBONN_evm.TU.Sc2ySwM_344.871 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-06 58.9 237 24.5
Mapoly0059s0080 Marchantia polymorpha HOM05D001779 ORTHO05D023528 1.6e-06 58.9 195 25.6
CAN.G14.21 Capsicum annuum HOM05D001779 ORTHO05D001753 2.0e-06 58.5 363 19.3
FvH4_5g32370 Fragaria vesca HOM05D000001 ORTHO05D007291 2.0e-06 58.5 291 20.6
FAN18G2000 Fragaria x ananassa HOM05D000001 ORTHO05D007291 2.0e-06 58.5 291 20.6
PGR102G3313 Punica granatum HOM05D000001 ORTHO05D000003 2.0e-06 58.5 231 23.8
AagrBONN_evm.TU.Sc2ySwM_344.1855 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.7e-06 58.2 184 26.6
AL1G17770 Arabidopsis lyrata HOM05D006354 ORTHO05D007773 2.7e-06 58.2 204 26.0
AT1G07590 Arabidopsis thaliana HOM05D006354 ORTHO05D007773 2.7e-06 58.2 204 26.5
BcaC07g42486 Brassica carinata HOM05D006354 ORTHO05D007773 2.7e-06 58.2 233 24.9
Lsat_1_v5_gn_4_77281 Lactuca sativa HOM05D000001 ORTHO05D000003 2.7e-06 58.2 321 20.2
Manes.12G046600 Manihot esculenta HOM05D000001 ORTHO05D000003 2.7e-06 58.2 203 24.1
SalBow5G5026 Salvia bowleyana HOM05D000001 ORTHO05D000003 2.7e-06 58.2 294 22.1
HPP92_002329 Vanilla planifolia HOM05D000001 ORTHO05D000003 2.7e-06 58.2 290 20.7
MD14G1199400 Malus domestica HOM05D000001 ORTHO05D000003 4.5e-06 57.4 261 21.5
TWI59G0840 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 4.5e-06 57.4 304 20.7
VMungo0720G2901 Vigna mungo HOM05D000001 ORTHO05D000003 4.5e-06 57.4 261 21.8
Actinidia28434 Actinidia chinensis HOM05D000001 ORTHO05D007291 5.9e-06 57.0 236 25.4
AagrBONN_evm.TU.Sc2ySwM_117.300 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.9e-06 57.0 160 23.1
BcaC07g41984 Brassica carinata HOM05D006354 ORTHO05D007773 5.9e-06 57.0 232 24.1
A05p36690 Brassica napus HOM05D000001 ORTHO05D000003 5.9e-06 57.0 142 23.2
C08p50450 Brassica napus HOM05D006354 ORTHO05D007773 5.9e-06 57.0 232 24.1
BolC8t52573H Brassica oleracea HOM05D006354 ORTHO05D007773 5.9e-06 57.0 232 24.1
CiPaw.03G095600 Carya illinoinensis HOM05D000001 ORTHO05D009335 5.9e-06 57.0 299 22.7
Duzib084G0478 Durio zibethinus HOM05D000001 ORTHO05D000003 5.9e-06 57.0 272 21.0
PSO170G6201 Papaver somniferum HOM05D000001 ORTHO05D009582 5.9e-06 57.0 318 22.3
Pp3c3_24770 Physcomitrium patens HOM05D000001 ORTHO05D000003 5.9e-06 57.0 204 23.0
unitig_748.g7571 Utricularia gibba HOM05D000001 ORTHO05D009582 5.9e-06 57.0 239 22.6
ATR0618G307 Amborella trichopoda HOM05D000001 ORTHO05D000003 7.8e-06 56.6 198 25.3
ClCG03G007520 Citrullus lanatus HOM05D000001 ORTHO05D000003 7.8e-06 56.6 280 22.1
FAN04G2674 Fragaria x ananassa HOM05D000001 ORTHO05D010175 7.8e-06 56.6 197 22.8
Oeu023444.2 Olea europaea HOM05D000001 ORTHO05D009144 7.8e-06 56.6 196 27.6
RcHm_v2.0_Chr1g0337001 Rosa chinensis HOM05D000001 ORTHO05D000003 7.8e-06 56.6 268 22.0
THA.LOC104821986 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 7.8e-06 56.6 151 29.1


User provided reference genes

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