Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G328900 Prunus persica HOM05D002009 ORTHO05D336243 3.6e-42 174.5 87 100.0
Prupe.4G277100 Prunus persica HOM05D002009 ORTHO05D334398 1.3e-36 156.0 87 93.1
Prupe.6G025200 Prunus persica HOM05D002009 ORTHO05D336028 2.4e-30 135.2 65 100.0
Prupe.6G324000 Prunus persica HOM05D002009 ORTHO05D006831 6.2e-10 67.4 35 91.4
MD12G1217900 Malus domestica HOM05D002009 ORTHO05D006831 6.9e-09 63.9 35 82.9
Sc09g0003130 Simmondsia chinensis HOM05D002009 ORTHO05D006831 6.9e-09 63.9 35 85.7
EL10Ac4g09369 Beta vulgaris HOM05D002009 ORTHO05D006831 9.0e-09 63.5 34 88.2
QL03p007353 Quercus lobata HOM05D002009 ORTHO05D006831 9.0e-09 63.5 35 82.9
QL03p007751 Quercus lobata HOM05D002009 ORTHO05D006831 9.0e-09 63.5 35 82.9
RcHm_v2.0_Chr3g0455131 Rosa chinensis HOM05D002009 ORTHO05D006831 9.0e-09 63.5 34 88.2
Dinv40301 Davidia involucrata HOM05D002009 ORTHO05D006831 1.5e-08 62.8 34 88.2
Hund07076 Selenicereus undatus HOM05D002009 ORTHO05D006831 1.5e-08 62.8 34 85.3
GSVIVG01000087001 Vitis vinifera HOM05D002009 ORTHO05D006831 2.0e-08 62.4 34 85.3
Ah.04g160310 Amaranthus hybridus HOM05D002009 ORTHO05D006831 2.6e-08 62.0 34 85.3
Cpa.g.sc48.68 Carica papaya HOM05D002009 ORTHO05D006831 2.6e-08 62.0 34 85.3
AUR62000811 Chenopodium quinoa HOM05D002009 ORTHO05D006831 2.6e-08 62.0 34 82.4
Gohir.D08G227001 Gossypium hirsutum HOM05D002009 ORTHO05D006831 2.6e-08 62.0 34 88.2
Gorai.004G241000 Gossypium raimondii HOM05D002009 ORTHO05D006831 2.6e-08 62.0 34 88.2
PSO170G1195 Papaver somniferum HOM05D002009 ORTHO05D006831 2.6e-08 62.0 35 80.0
PSO210G3028 Papaver somniferum HOM05D002009 ORTHO05D006831 2.6e-08 62.0 35 80.0
SGA_v2.0_scaffold80G25788 Striga asiatica HOM05D002009 ORTHO05D006831 2.6e-08 62.0 39 76.9
Aa31LG2G11690 Aethionema arabicum HOM05D000208 ORTHO05D006831 3.4e-08 61.6 34 85.3
AL2G26100 Arabidopsis lyrata HOM05D002009 ORTHO05D006831 3.4e-08 61.6 34 85.3
Carub.0002s1383 Capsella rubella HOM05D002009 ORTHO05D006831 3.4e-08 61.6 34 85.3
FvH4_6g06120 Fragaria vesca HOM05D002009 ORTHO05D006831 3.4e-08 61.6 34 85.3
FAN09G2733 Fragaria x ananassa HOM05D002009 ORTHO05D006831 3.4e-08 61.6 34 85.3
FAN14G2713 Fragaria x ananassa HOM05D002009 ORTHO05D006831 3.4e-08 61.6 34 85.3
Gohir.A08G210100 Gossypium hirsutum HOM05D002009 ORTHO05D006831 3.4e-08 61.6 34 85.3
THA.LOC104823729 Tarenaya hassleriana HOM05D002009 ORTHO05D006831 3.4e-08 61.6 34 85.3
Atru.chr2.372 Acer truncatum HOM05D002009 ORTHO05D006831 4.4e-08 61.2 35 77.1
AT1G67500 Arabidopsis thaliana HOM05D002009 ORTHO05D006831 4.4e-08 61.2 34 82.4
Ciclev10003639m.g Citrus clementina HOM05D002009 ORTHO05D006831 4.4e-08 61.2 34 85.3
DCAR_001814 Daucus carota HOM05D002009 ORTHO05D006831 4.4e-08 61.2 35 82.9
FAN05G0625 Fragaria x ananassa HOM05D002009 ORTHO05D006831 4.4e-08 61.2 33 87.9
Rhsim06G0107300 Rhododendron simsii HOM05D002009 ORTHO05D006831 4.4e-08 61.2 34 85.3
CARHR060080 Cardamine hirsuta HOM05D002009 ORTHO05D006831 5.8e-08 60.8 34 82.4
AUR62005157 Chenopodium quinoa HOM05D002009 ORTHO05D006831 5.8e-08 60.8 34 79.4
ClCG02G015610 Citrullus lanatus HOM05D002009 ORTHO05D006831 5.8e-08 60.8 34 79.4
CsaV3_2G006490 Cucumis sativus L. HOM05D002009 ORTHO05D006831 5.8e-08 60.8 34 79.4
Hma1.2p1_1077F.1_g254700 Hydrangea macrophylla HOM05D002009 ORTHO05D006831 5.8e-08 60.8 34 85.3
Rhsim12G0060600 Rhododendron simsii HOM05D002009 ORTHO05D006831 5.8e-08 60.8 34 85.3
Thecc.05G301300 Theobroma cacao HOM05D002009 ORTHO05D006831 5.8e-08 60.8 34 85.3
TPR.G33207 Trifolium pratense HOM05D002009 ORTHO05D006831 5.8e-08 60.8 37 75.7
vmacro04830 Vaccinium macrocarpon HOM05D002009 ORTHO05D006831 5.8e-08 60.8 34 85.3
vmacro04986 Vaccinium macrocarpon HOM05D002009 ORTHO05D006831 5.8e-08 60.8 34 85.3
CAN.G1034.31 Capsicum annuum HOM05D002009 ORTHO05D006831 7.6e-08 60.5 34 82.4
MELO3C004237.2 Cucumis melo HOM05D002009 ORTHO05D006831 7.6e-08 60.5 34 76.5
Solyc01g099220.3 Solanum lycopersicum HOM05D002009 ORTHO05D006831 7.6e-08 60.5 34 82.4
Sopen01g042770 Solanum pennellii HOM05D002009 ORTHO05D006831 7.6e-08 60.5 34 82.4
Aqoxy2G03070 Aquilegia oxysepala HOM05D002009 ORTHO05D006831 9.9e-08 60.1 34 82.4
Ca_05812_v3 Cicer arietinum L. HOM05D002009 ORTHO05D006831 9.9e-08 60.1 34 79.4
Medtr7g113380 Medicago truncatula HOM05D002009 ORTHO05D006831 9.9e-08 60.1 34 79.4
Peaxi162Scf00037g00637 Petunia axillaris HOM05D002009 ORTHO05D006831 9.9e-08 60.1 34 82.4
Psat0s2197g0160 Pisum sativum HOM05D002009 ORTHO05D006831 9.9e-08 60.1 34 79.4
Sp5g22500 Schrenkiella parvula HOM05D002009 ORTHO05D006831 9.9e-08 60.1 34 82.4
Haze_04184 Corylus avellana HOM05D002009 ORTHO05D006831 1.3e-07 59.7 34 82.4
Migut.N02062 Erythranthe guttata HOM05D002009 ORTHO05D006831 1.3e-07 59.7 34 82.4
Migut.N02070 Erythranthe guttata HOM05D002009 ORTHO05D006831 1.3e-07 59.7 34 82.4
Thhalv10017996m.g Eutrema salsugineum HOM05D002009 ORTHO05D006831 1.3e-07 59.7 34 79.4
Lalb_Chr18g0045671 Lupinus albus HOM05D002009 ORTHO05D006831 1.3e-07 59.7 35 77.1
Nn3g21358 Nelumbo nucifera HOM05D002009 ORTHO05D006831 1.3e-07 59.7 34 82.4
Potri.013G022200 Populus trichocarpa HOM05D002009 ORTHO05D006831 1.3e-07 59.7 34 82.4
Sabra13G0024400 Salix brachista HOM05D002009 ORTHO05D006831 1.3e-07 59.7 34 82.4
Actinidia23644 Actinidia chinensis HOM05D002009 ORTHO05D006831 1.7e-07 59.3 34 82.4
Cc02_g33310 Coffea canephora HOM05D002009 ORTHO05D006831 1.7e-07 59.3 34 82.4
Manes.09G167800 Manihot esculenta HOM05D002009 ORTHO05D006831 1.7e-07 59.3 34 79.4
Nitab4.5_0000137g0070 Nicotiana tabacum HOM05D002009 ORTHO05D006831 1.7e-07 59.3 34 82.4
Nitab4.5_0003156g0080 Nicotiana tabacum HOM05D002009 ORTHO05D006831 1.7e-07 59.3 34 82.4
Pp3c2_33440 Physcomitrium patens HOM05D002009 ORTHO05D006831 1.7e-07 59.3 56 58.9
Sed0001711 Sechium edule HOM05D002009 ORTHO05D006831 1.7e-07 59.3 34 73.5
MSTRG.27991 Avicennia marina HOM05D002009 ORTHO05D006831 2.2e-07 58.9 34 79.4
ECA236G3568 Erigeron canadensis HOM05D002009 ORTHO05D006831 2.2e-07 58.9 56 55.4
FAN02G0878 Fragaria x ananassa HOM05D002009 ORTHO05D006831 2.2e-07 58.9 34 82.4
arahy.Tifrunner.gnm1.ann1.UY60S3 Arachis hypogaea HOM05D002009 ORTHO05D006831 2.9e-07 58.5 34 79.4
arahy.Tifrunner.gnm1.ann1.V7WSHY Arachis hypogaea HOM05D002009 ORTHO05D006831 2.9e-07 58.5 34 79.4
CSS0006817 Camellia sinensis var. sinensis HOM05D002009 ORTHO05D006831 2.9e-07 58.5 34 82.4
Eucgr.B01945 Eucalyptus grandis HOM05D002009 ORTHO05D006831 2.9e-07 58.5 34 82.4
Lj9C89G5 Lonicera japonica HOM05D002009 ORTHO05D006831 2.9e-07 58.5 34 79.4
Lju1040C0G1 Lonicera japonica HOM05D002009 ORTHO05D006831 2.9e-07 58.5 34 79.4
BcaB03g15362 Brassica carinata HOM05D002009 ORTHO05D006831 3.8e-07 58.2 33 81.8
A07p32520 Brassica napus HOM05D002009 ORTHO05D006831 3.8e-07 58.2 33 81.8
C06p38660 Brassica napus HOM05D002009 ORTHO05D006831 3.8e-07 58.2 33 81.8
BolC6t38955H Brassica oleracea HOM05D002009 ORTHO05D006831 3.8e-07 58.2 33 81.8
BraA07t30876Z Brassica rapa HOM05D002009 ORTHO05D006831 3.8e-07 58.2 33 81.8
CSS0012384 Camellia sinensis var. sinensis HOM05D002009 ORTHO05D006831 3.8e-07 58.2 34 82.4
HanXRQChr15g0469941 Helianthus annuus HOM05D002009 ORTHO05D006831 3.8e-07 58.2 34 76.5
Lj1g0026508 Lotus japonicus HOM05D002009 ORTHO05D006831 3.8e-07 58.2 34 76.5
MD05G1053900 Malus domestica HOM05D002009 ORTHO05D006831 3.8e-07 58.2 34 79.4
Mapoly0082s0049 Marchantia polymorpha HOM05D002009 ORTHO05D006831 3.8e-07 58.2 34 79.4
Rhsim06G0107400 Rhododendron simsii HOM05D002009 ORTHO05D006831 3.8e-07 58.2 34 82.4
Lsat_1_v5_gn_9_86800 Lactuca sativa HOM05D002009 ORTHO05D006831 4.9e-07 57.8 34 73.5
SMO146G0384 Selaginella moellendorffii HOM05D002009 ORTHO05D006831 4.9e-07 57.8 39 66.7
SEGI_27212 Sequoiadendron giganteum HOM05D002009 ORTHO05D006831 4.9e-07 57.8 34 76.5
CANSAT54G3017 Cannabis sativa HOM05D002009 ORTHO05D006831 1.1e-06 56.6 34 76.5
TWI36G1702 Tripterygium wilfordii HOM05D002009 ORTHO05D006831 1.1e-06 56.6 34 76.5
ATR0706G256 Amborella trichopoda HOM05D002009 ORTHO05D006831 1.4e-06 56.2 35 71.4
CiPaw.07G018700 Carya illinoinensis HOM05D002009 ORTHO05D006831 1.4e-06 56.2 34 76.5
HPP92_001324 Vanilla planifolia HOM05D002009 ORTHO05D006831 1.4e-06 56.2 34 73.5
CBR_g26315 Chara braunii HOM05D002009 ORTHO05D006831 1.9e-06 55.8 34 73.5
Cre09.g387400 Chlamydomonas reinhardtii HOM05D002009 ORTHO05D006831 1.9e-06 55.8 33 75.8
Glyma.03G237200 Glycine max HOM05D002009 ORTHO05D006831 1.9e-06 55.8 34 70.6
Zm00001eb330170 Zea mays HOM05D002009 ORTHO05D006831 1.9e-06 55.8 34 73.5
VMungo0540G0763 Vigna mungo HOM05D002009 ORTHO05D006831 3.2e-06 55.1 34 70.6
Oeu002661.1 Olea europaea HOM05D002009 ORTHO05D006831 4.2e-06 54.7 33 72.7
AagrBONN_evm.TU.Sc2ySwM_362.1967 Anthoceros agrestis HOM05D002009 ORTHO05D006831 5.4e-06 54.3 34 67.6


User provided reference genes

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