Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 6.1e-166 587.4 299 100.0
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 1.6e-150 536.2 299 92.0
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 5.4e-146 521.2 299 90.3
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 1.6e-137 493.0 299 84.3
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 6.8e-133 477.6 299 83.3
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 6.8e-133 477.6 299 83.3
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.6e-132 475.7 299 82.9
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.4e-130 469.9 299 82.6
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.1e-129 466.1 276 86.6
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.5e-127 459.1 321 77.6
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 1.1e-125 453.8 293 80.5
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 4.0e-125 451.8 285 81.4
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 4.4e-124 448.4 307 76.9
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 5.8e-124 448.0 299 76.9
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 2.2e-123 446.0 276 81.5
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 4.9e-123 444.9 302 75.8
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 1.1e-122 443.7 292 78.8
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 4.2e-122 441.8 285 78.2
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 7.1e-122 441.0 292 77.4
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 2.3e-120 436.0 296 75.0
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 3.9e-120 435.3 286 78.7
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.1e-119 433.7 288 77.8
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 1.1e-119 433.7 288 77.8
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 2.5e-119 432.6 283 78.1
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 2.5e-119 432.6 325 72.0
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 5.6e-119 431.4 301 73.1
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 5.6e-119 431.4 294 76.9
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 7.3e-119 431.0 303 72.9
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 7.3e-119 431.0 305 73.1
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 6.2e-118 427.9 283 75.6
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 8.1e-118 427.6 270 80.4
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 1.1e-117 427.2 285 75.4
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 3.1e-117 425.6 284 77.5
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 4.0e-117 425.2 287 76.3
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 1.7e-115 419.9 287 74.6
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 3.8e-115 418.7 303 71.6
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 3.8e-115 418.7 297 74.7
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 8.4e-115 417.5 284 73.2
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 1.4e-114 416.8 304 70.1
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 1.4e-114 416.8 328 67.4
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 7.1e-114 414.5 287 72.8
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 7.1e-114 414.5 273 77.7
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 9.3e-114 414.1 302 69.9
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 1.2e-113 413.7 286 74.8
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 1.6e-113 413.3 295 72.2
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 2.1e-113 412.9 300 71.3
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 3.5e-113 412.1 263 79.5
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 4.6e-113 411.8 290 72.1
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 4.6e-113 411.8 290 72.1
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 4.6e-113 411.8 300 71.0
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 1.0e-112 410.6 302 69.9
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 1.3e-112 410.2 304 70.1
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 1.3e-112 410.2 304 70.1
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 1.3e-112 410.2 285 73.3
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 2.3e-112 409.5 294 71.8
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 3.9e-112 408.7 286 71.0
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 3.9e-112 408.7 287 71.8
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.1e-112 408.3 257 77.4
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 8.7e-112 407.5 304 69.4
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 8.7e-112 407.5 300 70.7
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 1.1e-111 407.1 277 74.7
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 1.5e-111 406.8 288 72.2
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 2.5e-111 406.0 277 74.4
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 4.3e-111 405.2 270 77.0
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 4.3e-111 405.2 270 77.0
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 5.6e-111 404.8 301 69.1
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 7.4e-111 404.4 280 74.3
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 2.8e-110 402.5 296 72.0
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 2.8e-110 402.5 276 74.6
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 3.7e-110 402.1 303 69.0
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 3.7e-110 402.1 288 69.8
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 4.8e-110 401.7 303 69.0
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 1.4e-109 400.2 287 70.0
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 5.3e-109 398.3 267 75.7
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 6.9e-109 397.9 260 76.5
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 2.0e-108 396.4 305 68.5
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 4.5e-108 395.2 287 69.7
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 7.6e-108 394.4 290 68.6
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 2.9e-107 392.5 277 70.8
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 2.9e-107 392.5 277 70.8
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.4e-106 389.4 257 73.9
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 5.5e-106 388.3 298 67.4
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 7.1e-106 387.9 269 73.6
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 2.7e-105 386.0 272 71.3
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 2.7e-105 386.0 297 69.0
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 6.0e-105 384.8 261 71.3
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 7.9e-105 384.4 257 72.0
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.0e-104 384.0 272 70.2
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 1.0e-104 384.0 314 64.6
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 1.8e-104 383.3 286 68.5
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 3.9e-104 382.1 300 67.3
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 3.9e-104 382.1 303 65.7
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 1.1e-103 380.6 276 70.7
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 1.5e-103 380.2 272 69.5
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 1.5e-103 380.2 248 74.2
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 1.9e-103 379.8 287 69.3
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 3.3e-103 379.0 272 71.3
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 6.2e-102 374.8 280 69.6
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 1.1e-101 374.0 275 68.7
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 1.4e-101 373.6 299 69.2
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 6.9e-101 371.3 252 74.6
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 4.5e-100 368.6 235 74.0
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 1.7e-99 366.7 305 64.3
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 2.2e-99 366.3 296 65.5
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 8.4e-99 364.4 271 66.8
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 8.4e-99 364.4 296 65.9
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 1.9e-98 363.2 273 64.8
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 3.2e-98 362.5 273 64.5
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 1.5e-95 353.6 287 63.4
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 4.3e-95 352.1 235 73.6
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 2.2e-94 349.7 302 61.6
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 1.1e-93 347.4 256 69.9
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 2.4e-93 346.3 254 68.9
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 5.1e-88 328.6 254 63.4
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 6.9e-85 318.2 254 65.4
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 2.0e-84 316.6 235 65.5
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 2.9e-83 312.8 280 58.6
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 3.8e-83 312.4 262 61.8
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 1.4e-82 310.5 257 61.1
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 1.3e-78 297.4 257 57.6
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 1.4e-77 293.9 278 55.8
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 4.1e-77 292.4 265 55.5
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 4.5e-76 288.9 208 74.0
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 8.5e-75 284.6 292 53.1
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 5.5e-74 282.0 176 79.5
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.2e-73 280.8 300 50.0
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 4.1e-69 265.8 283 51.6
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.5e-66 255.4 200 65.0
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 2.6e-63 246.5 142 83.8
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 3.1e-61 239.6 215 56.3
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 5.9e-60 235.3 142 80.3
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 5.9e-60 235.3 142 78.2
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 1.7e-59 233.8 248 51.6
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.5e-50 203.4 182 59.3
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.8e-49 199.9 282 41.8
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 2.8e-49 199.9 114 86.0
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 2.6e-47 193.4 127 74.0
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 1.7e-46 190.7 162 66.0
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 2.8e-46 189.9 128 71.1
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 8.6e-43 178.3 215 47.4
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 1.6e-41 174.1 238 46.2
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 7.0e-37 158.7 239 41.0
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 4.3e-34 149.4 259 38.2
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 1.5e-31 141.0 129 58.1
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 2.2e-30 137.1 84 77.4
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 2.2e-30 137.1 83 78.3
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 4.6e-28 129.4 154 51.9
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 1.1e-26 124.8 86 72.1
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 5.2e-24 115.9 191 42.9
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 9.9e-23 111.7 184 37.0
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 1.1e-21 108.2 72 70.8
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 5.4e-21 105.9 62 82.3
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 6.0e-20 102.4 130 49.2
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.3e-19 101.3 59 74.6
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 1.5e-15 87.8 154 31.2
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 2.6e-15 87.0 284 23.6
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 3.4e-15 86.7 50 82.0
CBR_g8311 Chara braunii HOM05D004215 ORTHO05D018306 7.6e-15 85.5 168 31.5
Mapoly0118s0023 Marchantia polymorpha HOM05D004215 ORTHO05D018306 7.6e-15 85.5 236 26.7
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 5.4e-13 79.3 142 28.9
PRCOL_00001993 Prasinoderma coloniale HOM05D004215 ORTHO05D005293 1.3e-11 74.7 157 30.6
SEGI_37569 Sequoiadendron giganteum HOM05D004215 ORTHO05D018306 8.1e-09 65.5 130 29.2
C08p45130 Brassica napus HOM05D004215 ORTHO05D005293 5.8e-07 59.3 40 67.5
BolC8t52061H Brassica oleracea HOM05D004215 ORTHO05D005293 5.8e-07 59.3 40 67.5
Thhalv10007988m.g Eutrema salsugineum HOM05D000565 ORTHO05D004389 7.6e-07 58.9 167 26.9
Carub.0001s1955 Capsella rubella HOM05D000565 ORTHO05D004389 1.3e-06 58.2 165 27.3
CARHR020500 Cardamine hirsuta HOM05D000565 ORTHO05D004389 1.3e-06 58.2 165 27.3
COL.COLO4_26135 Corchorus olitorius HOM05D000565 ORTHO05D004389 1.7e-06 57.8 172 26.7
CANSAT11G1196 Cannabis sativa HOM05D000565 ORTHO05D005648 2.2e-06 57.4 164 27.4
Hma1.2p1_0315F.1_g122190 Hydrangea macrophylla HOM05D000565 ORTHO05D004389 2.2e-06 57.4 165 26.1
Hma1.2p1_0956F.1_g241235 Hydrangea macrophylla HOM05D000565 ORTHO05D004389 2.2e-06 57.4 165 26.1
Aa31LG7G4470 Aethionema arabicum HOM05D000565 ORTHO05D004389 2.9e-06 57.0 165 27.3
A07p16060 Brassica napus HOM05D000565 ORTHO05D004389 3.8e-06 56.6 165 27.3
GSVIVG01009925001 Vitis vinifera HOM05D000565 ORTHO05D004389 3.8e-06 56.6 165 26.7
THA.LOC104811414 Tarenaya hassleriana HOM05D000565 ORTHO05D004389 4.9e-06 56.2 165 26.7
AagrBONN_evm.TU.Sc2ySwM_228.2898 Anthoceros agrestis HOM05D000565 ORTHO05D005648 6.4e-06 55.8 162 29.6
AL1G32800 Arabidopsis lyrata HOM05D000565 ORTHO05D004389 6.4e-06 55.8 167 26.3
AT1G20020 Arabidopsis thaliana HOM05D000565 ORTHO05D004389 6.4e-06 55.8 167 26.3
CANSAT11G0092 Cannabis sativa HOM05D000565 ORTHO05D005648 6.4e-06 55.8 222 27.5
Lj2A470G26 Lonicera japonica HOM05D000565 ORTHO05D004389 6.4e-06 55.8 165 25.5
BcaB03g12883 Brassica carinata HOM05D000565 ORTHO05D004389 8.4e-06 55.5 165 26.7
BcaC07g39016 Brassica carinata HOM05D000565 ORTHO05D004389 8.4e-06 55.5 165 26.7
Zm00001eb379240 Zea mays HOM05D000565 ORTHO05D004389 8.4e-06 55.5 165 24.2


User provided reference genes

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