Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G258900 Prunus persica HOM05D003884 ORTHO05D004482 3.0e-96 355.1 175 100.0
FAN22G1839 Fragaria x ananassa HOM05D003884 ORTHO05D004482 4.1e-61 238.4 169 70.4
FAN17G0777 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.0e-59 233.8 169 70.4
FAN07G1775 Fragaria x ananassa HOM05D003884 ORTHO05D004482 5.0e-59 231.5 169 68.6
FvH4_4g34960 Fragaria vesca HOM05D003884 ORTHO05D004482 3.6e-57 225.3 168 67.3
FAN12G0178 Fragaria x ananassa HOM05D003884 ORTHO05D004482 3.6e-57 225.3 168 67.3
Dinv24898 Davidia involucrata HOM05D003884 ORTHO05D004482 3.0e-56 222.2 153 72.5
CiPaw.05G149600 Carya illinoinensis HOM05D003884 ORTHO05D004482 4.1e-53 211.8 171 66.1
CSS0028392 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 1.0e-51 207.2 174 64.9
GSVIVG01020166001 Vitis vinifera HOM05D003884 ORTHO05D004482 2.2e-51 206.1 145 70.3
Haze_12163 Corylus avellana HOM05D003884 ORTHO05D004482 4.2e-50 201.8 169 62.1
Manes.01G197000 Manihot esculenta HOM05D003884 ORTHO05D004482 9.4e-50 200.7 173 61.8
Gorai.009G344500 Gossypium raimondii HOM05D003884 ORTHO05D004482 8.0e-49 197.6 164 62.8
Sed0027154 Sechium edule HOM05D003884 ORTHO05D004482 1.2e-47 193.7 170 60.6
TWI75G1604 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 5.7e-47 191.4 171 59.1
Cpa.g.sc5.356 Carica papaya HOM05D003884 ORTHO05D004482 9.8e-47 190.7 150 62.7
Hma1.2p1_1017F.1_g248220 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 1.3e-46 190.3 117 77.8
Gohir.D05G321100 Gossypium hirsutum HOM05D003884 ORTHO05D004482 1.4e-45 186.8 168 60.1
Lj4g0012912 Lotus japonicus HOM05D003884 ORTHO05D004482 1.4e-45 186.8 158 63.9
TAR622G0672 Trochodendron aralioides HOM05D003884 ORTHO05D004482 4.1e-45 185.3 173 57.2
Rhsim12G0124000 Rhododendron simsii HOM05D003884 ORTHO05D004482 5.4e-45 184.9 173 55.5
Thecc.02G243200 Theobroma cacao HOM05D003884 ORTHO05D004482 5.4e-45 184.9 156 62.2
Gohir.A05G318900 Gossypium hirsutum HOM05D003884 ORTHO05D004482 9.1e-45 184.1 162 60.5
PGSC0003DMG400015596 Solanum tuberosum HOM05D003884 ORTHO05D004482 1.2e-44 183.7 163 60.1
Nitab4.5_0004536g0010 Nicotiana tabacum HOM05D003884 ORTHO05D004482 1.6e-44 183.3 128 68.0
Glyma.08G290900 Glycine max HOM05D003884 ORTHO05D004482 2.7e-44 182.6 154 60.4
Duzib248G1263 Durio zibethinus HOM05D003884 ORTHO05D004482 3.5e-44 182.2 168 57.1
CsaV3_5G031830 Cucumis sativus L. HOM05D003884 ORTHO05D004482 4.5e-44 181.8 163 55.2
Lsat_1_v5_gn_3_49081 Lactuca sativa HOM05D003884 ORTHO05D004482 1.3e-43 180.3 168 56.5
SGA_v2.0_scaffold87G27003 Striga asiatica HOM05D003884 ORTHO05D004482 1.3e-43 180.3 122 67.2
COL.COLO4_37908 Corchorus olitorius HOM05D003884 ORTHO05D004482 2.9e-43 179.1 132 64.4
Nitab4.5_0004033g0080 Nicotiana tabacum HOM05D003884 ORTHO05D004482 3.8e-43 178.7 125 67.2
Oeu001665.1 Olea europaea HOM05D003884 ORTHO05D004482 5.0e-43 178.3 121 66.9
AUR62026600 Chenopodium quinoa HOM05D003884 ORTHO05D004482 6.6e-43 177.9 113 69.0
MELO3C012022.2 Cucumis melo HOM05D003884 ORTHO05D004482 8.6e-43 177.6 179 51.4
Sopen05g002070 Solanum pennellii HOM05D003884 ORTHO05D004482 1.1e-42 177.2 141 63.1
MSTRG.2381 Avicennia marina HOM05D003884 ORTHO05D004482 1.5e-42 176.8 113 69.9
PSO161G0071 Papaver somniferum HOM05D003884 ORTHO05D004482 1.5e-42 176.8 158 57.6
Aqoxy3G00923 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 9.5e-42 174.1 145 60.0
PSO478G1563 Papaver somniferum HOM05D003884 ORTHO05D004482 9.5e-42 174.1 134 61.9
ClCG05G025070 Citrullus lanatus HOM05D003884 ORTHO05D004482 1.6e-41 173.3 201 48.8
Psat4g125600 Pisum sativum HOM05D003884 ORTHO05D004482 1.6e-41 173.3 109 70.6
Medtr8g063190 Medicago truncatula HOM05D003884 ORTHO05D004482 2.1e-41 172.9 127 68.5
HPP92_017073 Vanilla planifolia HOM05D003884 ORTHO05D004482 4.7e-41 171.8 109 68.8
QL03p062328 Quercus lobata HOM05D003884 ORTHO05D004482 6.8e-40 167.9 233 43.8
VMungo0251G0159 Vigna mungo HOM05D003884 ORTHO05D004482 6.8e-40 167.9 155 56.1
Peaxi162Scf00421g00615 Petunia axillaris HOM05D003884 ORTHO05D004482 8.9e-40 167.5 150 58.0
ATR1149G127 Amborella trichopoda HOM05D003884 ORTHO05D004482 1.5e-39 166.8 135 61.5
arahy.Tifrunner.gnm1.ann1.QD9WVF Arachis hypogaea HOM05D003884 ORTHO05D004482 7.5e-39 164.5 178 51.1
CDE05G1492 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 9.8e-39 164.1 126 59.5
Migut.E00143 Erythranthe guttata HOM05D003884 ORTHO05D004482 9.8e-39 164.1 109 64.2
Atru.chr11.1968 Acer truncatum HOM05D003884 ORTHO05D004482 2.2e-38 162.9 152 57.2
arahy.Tifrunner.gnm1.ann1.9N1GR3 Arachis hypogaea HOM05D003884 ORTHO05D004482 4.9e-38 161.8 178 50.6
ECA246G1403 Erigeron canadensis HOM05D003884 ORTHO05D004482 1.4e-37 160.2 110 65.5
QL03p062368 Quercus lobata HOM05D003884 ORTHO05D004482 3.2e-37 159.1 256 39.8
Hund25320 Selenicereus undatus HOM05D003884 ORTHO05D004482 5.4e-37 158.3 168 52.4
Phvul.003G054800 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 7.0e-37 157.9 113 69.9
MBI15_g16616_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 1.2e-36 157.1 100 68.0
MBI15_g45678_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 6.6e-35 151.4 108 64.8
Cc00_g22770 Coffea canephora HOM05D003884 ORTHO05D004482 8.0e-33 144.4 155 46.5
CAN.G1160.2 Capsicum annuum HOM05D003884 ORTHO05D004482 8.9e-32 141.0 158 43.0
PGR102G1298 Punica granatum HOM05D003884 ORTHO05D004482 1.2e-31 140.6 146 50.7
unitig_62.g23678 Utricularia gibba HOM05D003884 ORTHO05D004482 3.4e-31 139.0 111 54.1
Migut.L01446 Erythranthe guttata HOM05D003884 ORTHO05D004482 2.9e-30 136.0 170 43.5
Hma1.2p1_0160F.1_g070580 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 2.9e-30 136.0 107 54.2
CSS0013891 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 3.7e-30 135.6 151 45.0
Dinv30997 Davidia involucrata HOM05D003884 ORTHO05D004482 3.7e-30 135.6 111 55.0
Dinv31106 Davidia involucrata HOM05D003884 ORTHO05D004482 3.7e-30 135.6 111 55.0
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 4.9e-30 135.2 125 52.0
Sc14g0008540 Simmondsia chinensis HOM05D003884 ORTHO05D004482 4.9e-30 135.2 111 55.9
SGA_v2.0_scaffold8G04247 Striga asiatica HOM05D003884 ORTHO05D004482 4.9e-30 135.2 132 47.0
CDE10G0847 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 8.3e-30 134.4 158 43.7
PSO832G2848 Papaver somniferum HOM05D003884 ORTHO05D004482 1.1e-29 134.0 105 57.1
Lsat_1_v5_gn_3_49121 Lactuca sativa HOM05D003884 ORTHO05D004482 1.4e-29 133.7 119 50.4
Nitab4.5_0005722g0050 Nicotiana tabacum HOM05D003884 ORTHO05D004482 1.4e-29 133.7 107 51.4
arahy.Tifrunner.gnm1.ann1.W247EX Arachis hypogaea HOM05D003884 ORTHO05D004482 1.9e-29 133.3 122 51.6
Ciclev10032870m.g Citrus clementina HOM05D003884 ORTHO05D004482 1.9e-29 133.3 108 56.5
Rhsim12G0124300 Rhododendron simsii HOM05D003884 ORTHO05D004482 1.9e-29 133.3 127 50.4
TAR629G2251 Trochodendron aralioides HOM05D003884 ORTHO05D004482 1.9e-29 133.3 111 53.2
CDE10G0415 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 2.4e-29 132.9 166 42.8
DCAR_026554 Daucus carota HOM05D003884 ORTHO05D004482 2.4e-29 132.9 106 56.6
Glyma.18G132900 Glycine max HOM05D003884 ORTHO05D004482 2.4e-29 132.9 142 47.9
Oeu001657.1 Olea europaea HOM05D003884 ORTHO05D004482 2.4e-29 132.9 159 44.7
Nn4g22884 Nelumbo nucifera HOM05D003884 ORTHO05D004482 3.2e-29 132.5 157 44.6
THA.LOC104819574 Tarenaya hassleriana HOM05D003884 ORTHO05D004482 3.2e-29 132.5 142 45.8
Aa31LG1G4430 Aethionema arabicum HOM05D003884 ORTHO05D004482 4.1e-29 132.1 105 56.2
Eucgr.B02560 Eucalyptus grandis HOM05D003884 ORTHO05D004482 4.1e-29 132.1 173 41.0
Nitab4.5_0000257g0220 Nicotiana tabacum HOM05D003884 ORTHO05D004482 4.1e-29 132.1 107 50.5
Atru.chr11.1961 Acer truncatum HOM05D003884 ORTHO05D004482 5.4e-29 131.7 109 55.0
EL10Ac6g13616 Beta vulgaris HOM05D000625 ORTHO05D000467 5.4e-29 131.7 114 55.3
COL.COLO4_38097 Corchorus olitorius HOM05D003884 ORTHO05D004482 5.4e-29 131.7 132 49.2
Duzib248G1092 Durio zibethinus HOM05D003884 ORTHO05D004482 5.4e-29 131.7 183 41.5
PSO063G2462 Papaver somniferum HOM05D003884 ORTHO05D004482 5.4e-29 131.7 108 53.7
Peaxi162Scf00421g00711 Petunia axillaris HOM05D003884 ORTHO05D004482 5.4e-29 131.7 107 50.5
AL1G21330 Arabidopsis lyrata HOM05D003884 ORTHO05D004482 7.0e-29 131.3 105 54.3
MSTRG.622 Avicennia marina HOM05D003884 ORTHO05D004482 7.0e-29 131.3 107 54.2
EL10Ac4g10087 Beta vulgaris HOM05D003884 ORTHO05D004482 7.0e-29 131.3 150 46.0
Potri.010G094900 Populus trichocarpa HOM05D003884 ORTHO05D004482 7.0e-29 131.3 132 47.0
PGR119G0467 Punica granatum HOM05D003884 ORTHO05D004482 1.6e-28 130.2 141 45.4
PGSC0003DMG400015599 Solanum tuberosum HOM05D003884 ORTHO05D004482 1.6e-28 130.2 107 52.3
TWI36G1174 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 1.6e-28 130.2 174 43.1
Actinidia08183 Actinidia chinensis HOM05D003884 ORTHO05D004482 2.0e-28 129.8 111 53.2
Ah.03g132360 Amaranthus hybridus HOM05D003884 ORTHO05D004482 2.0e-28 129.8 105 55.2
MD13G1086700 Malus domestica HOM05D003884 ORTHO05D004482 2.0e-28 129.8 168 41.7
Sed0006672 Sechium edule HOM05D003884 ORTHO05D004482 2.0e-28 129.8 147 42.9
Solyc05g006110.3 Solanum lycopersicum HOM05D003884 ORTHO05D004482 2.0e-28 129.8 107 52.3
Sopen05g002130 Solanum pennellii HOM05D003884 ORTHO05D004482 2.0e-28 129.8 107 52.3
Cpa.g.sc5.349 Carica papaya HOM05D003884 ORTHO05D004482 2.7e-28 129.4 105 54.3
Gohir.A03G142500 Gossypium hirsutum HOM05D003884 ORTHO05D004482 2.7e-28 129.4 105 54.3
Gorai.005G185900 Gossypium raimondii HOM05D003884 ORTHO05D004482 3.5e-28 129.0 105 54.3
MD13G1087300 Malus domestica HOM05D003884 ORTHO05D004482 3.5e-28 129.0 107 68.2
VMungo0251G2950 Vigna mungo HOM05D003884 ORTHO05D004482 3.5e-28 129.0 173 41.6
Actinidia27769 Actinidia chinensis HOM05D003884 ORTHO05D004482 4.6e-28 128.6 110 54.5
BcaC05g24871 Brassica carinata HOM05D003884 ORTHO05D004482 4.6e-28 128.6 105 53.3
A06p07300 Brassica napus HOM05D003884 ORTHO05D004482 4.6e-28 128.6 105 53.3
C05p08810 Brassica napus HOM05D003884 ORTHO05D004482 4.6e-28 128.6 105 53.3
BolC5t29627H Brassica oleracea HOM05D003884 ORTHO05D004482 4.6e-28 128.6 105 53.3
BraA06t23935Z Brassica rapa HOM05D003884 ORTHO05D004482 4.6e-28 128.6 105 53.3
Lalb_Chr05g0228011 Lupinus albus HOM05D003884 ORTHO05D004482 4.6e-28 128.6 157 43.9
HPP92_010213 Vanilla planifolia HOM05D003884 ORTHO05D004482 4.6e-28 128.6 135 48.9
BcaC05g24933 Brassica carinata HOM05D003884 ORTHO05D004482 6.0e-28 128.3 105 53.3
Medtr8g063150 Medicago truncatula HOM05D003884 ORTHO05D004482 6.0e-28 128.3 164 42.7
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 7.8e-28 127.9 109 53.2
Sp1g09160 Schrenkiella parvula HOM05D003884 ORTHO05D004482 7.8e-28 127.9 105 52.4
ECA238G2328 Erigeron canadensis HOM05D003884 ORTHO05D004482 1.0e-27 127.5 101 54.5
Thhalv10008855m.g Eutrema salsugineum HOM05D003884 ORTHO05D004482 1.0e-27 127.5 105 53.3
Phvul.003G055100 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 1.0e-27 127.5 135 45.9
CsaV3_5G031870 Cucumis sativus L. HOM05D003884 ORTHO05D004482 1.3e-27 127.1 145 44.1
Lj3A1049T56 Lonicera japonica HOM05D003884 ORTHO05D004482 1.3e-27 127.1 117 51.3
ATR1149G058 Amborella trichopoda HOM05D003884 ORTHO05D004482 1.7e-27 126.7 106 53.8
AT1G10522 Arabidopsis thaliana HOM05D003884 ORTHO05D004482 1.7e-27 126.7 105 53.3
CiPaw.05G146300 Carya illinoinensis HOM05D003884 ORTHO05D004482 1.7e-27 126.7 130 47.7
MELO3C012025.2 Cucumis melo HOM05D003884 ORTHO05D004482 1.7e-27 126.7 108 52.8
MD16G1086800 Malus domestica HOM05D003884 ORTHO05D004482 1.7e-27 126.7 166 42.2
Thecc.02G242500 Theobroma cacao HOM05D003884 ORTHO05D004482 1.7e-27 126.7 135 46.7
Aqoxy3G03081 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 2.3e-27 126.3 112 50.9
Gohir.D02G165800 Gossypium hirsutum HOM05D003884 ORTHO05D004482 2.3e-27 126.3 105 53.3
CARHR010670 Cardamine hirsuta HOM05D003884 ORTHO05D004482 3.0e-27 125.9 105 52.4
Sabra10G0067200 Salix brachista HOM05D003884 ORTHO05D004482 3.0e-27 125.9 125 47.2
Carub.0001s0996 Capsella rubella HOM05D003884 ORTHO05D004482 3.9e-27 125.6 105 51.4
AUR62039407 Chenopodium quinoa HOM05D003884 ORTHO05D004482 3.9e-27 125.6 107 52.3
Ca_22779_v3 Cicer arietinum L. HOM05D003884 ORTHO05D004482 5.0e-27 125.2 168 41.1
Lj4g0002760 Lotus japonicus HOM05D003884 ORTHO05D004482 5.0e-27 125.2 163 40.5
RcHm_v2.0_Chr4g0444421 Rosa chinensis HOM05D003884 ORTHO05D004482 5.0e-27 125.2 104 66.3
Manes.05G090800 Manihot esculenta HOM05D003884 ORTHO05D004482 8.6e-27 124.4 161 43.5
Haze_12138 Corylus avellana HOM05D003884 ORTHO05D004482 1.1e-26 124.0 109 52.3
RcHm_v2.0_Chr4g0444531 Rosa chinensis HOM05D003884 ORTHO05D004482 1.1e-26 124.0 105 53.3
ClCG05G025040 Citrullus lanatus HOM05D003884 ORTHO05D004482 1.5e-26 123.6 153 42.5
Zm00001eb098980 Zea mays HOM05D003884 ORTHO05D004482 2.5e-26 122.9 110 49.1
Prupe.1G259800 Prunus persica HOM05D003884 ORTHO05D004482 3.3e-26 122.5 105 52.4
FvH4_4g35001 Fragaria vesca HOM05D003884 ORTHO05D004482 4.3e-26 122.1 135 44.4
Psat4g126120 Pisum sativum HOM05D003884 ORTHO05D004482 9.5e-26 120.9 136 44.1
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.1e-25 119.8 132 45.5
QL03p062483 Quercus lobata HOM05D003884 ORTHO05D004482 2.1e-25 119.8 105 48.6
FAN07G1004 Fragaria x ananassa HOM05D003884 ORTHO05D004482 2.8e-25 119.4 135 43.7
FAN12G1036 Fragaria x ananassa HOM05D003884 ORTHO05D004482 3.6e-25 119.0 135 43.7
GSVIVG01020172001 Vitis vinifera HOM05D003884 ORTHO05D004482 6.2e-25 118.2 165 40.6
CANSAT11G1742 Cannabis sativa HOM05D003884 ORTHO05D004482 8.1e-25 117.9 105 50.5
TPR.G40428 Trifolium pratense HOM05D003884 ORTHO05D004482 1.4e-24 117.1 62 83.9
Os09g0382400 Oryza sativa ssp. japonica HOM05D003884 ORTHO05D004482 4.0e-24 115.5 108 46.3
CSS0008150 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 9.8e-23 110.9 82 68.3
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 1.7e-22 110.2 132 43.2
SalBow2G1244 Salvia bowleyana HOM05D003884 ORTHO05D004482 6.4e-22 108.2 169 36.1
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 1.9e-21 106.7 95 50.5
vmacro16279 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 1.2e-20 104.0 151 40.4
Nn3g16971 Nelumbo nucifera HOM05D003884 ORTHO05D004482 4.0e-16 89.0 75 62.7
MBI15_g14835_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 2.9e-14 82.8 62 58.1
MD16G1087000 Malus domestica HOM05D003884 ORTHO05D004482 6.4e-14 81.6 58 62.1
TPR.G35986 Trifolium pratense HOM05D003884 ORTHO05D004482 6.4e-14 81.6 59 59.3
Lalb_Chr05g0217181 Lupinus albus HOM05D003884 ORTHO05D004482 1.4e-13 80.5 100 48.0
Oeu001664.1 Olea europaea HOM05D003884 ORTHO05D004482 4.1e-13 79.0 64 56.2
CSS0019058 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 2.7e-12 76.3 129 42.6
CAN.G1248.1 Capsicum annuum HOM05D003884 ORTHO05D004482 2.7e-12 76.3 82 48.8
HanXRQChr15g0476661 Helianthus annuus HOM05D003884 ORTHO05D004482 7.8e-12 74.7 117 41.0
AUR62005315 Chenopodium quinoa HOM05D003884 ORTHO05D004482 2.3e-11 73.2 81 45.7
Medtr2g099400 Medicago truncatula HOM05D000001 ORTHO05D011365 2.3e-11 73.2 56 51.8
Cc11_g14300 Coffea canephora HOM05D003884 ORTHO05D004482 5.1e-11 72.0 58 56.9
vmacro16296 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 2.1e-09 66.6 47 68.1
TPR.G36109 Trifolium pratense HOM05D003884 ORTHO05D004482 1.5e-07 60.5 76 43.4


User provided reference genes

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