Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1738.0 846 100.0
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1540.4 854 87.7
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1504.2 859 86.5
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1426.8 851 79.7
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1416.0 858 78.8
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1414.1 845 80.0
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1396.7 866 77.8
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1383.6 854 78.0
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1379.8 849 76.6
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1335.1 850 74.7
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1328.5 853 73.7
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1326.2 849 74.9
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1324.7 850 74.4
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1318.5 847 74.0
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1317.0 850 72.9
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1316.6 847 73.9
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1316.2 850 74.4
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1307.7 851 74.0
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1300.4 853 73.0
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1296.6 850 73.8
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1295.4 853 72.8
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1294.6 848 71.9
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1294.3 852 72.8
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1290.0 852 72.5
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1286.9 852 72.3
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1284.6 851 71.4
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1270.4 855 71.7
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1264.6 823 73.4
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1264.2 852 71.0
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1255.0 851 70.3
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1253.0 852 70.2
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1250.7 880 68.6
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1248.0 970 64.0
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1245.3 853 69.9
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1244.6 884 68.8
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1244.2 854 69.7
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1244.2 809 73.9
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1243.8 852 71.0
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1241.5 850 69.3
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1238.8 851 69.1
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1238.4 811 72.7
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1234.6 852 69.5
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1228.8 847 69.9
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1227.6 852 68.8
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1224.5 848 68.3
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1223.0 849 69.0
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1218.8 851 67.6
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1216.8 853 68.2
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1212.2 848 67.9
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1209.9 849 67.3
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1209.5 853 68.0
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1204.9 849 67.0
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1202.2 849 67.7
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1202.2 848 68.3
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1189.5 851 66.7
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1187.9 851 66.6
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1186.4 851 66.4
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1184.1 855 67.0
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1183.3 845 66.9
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1180.6 854 65.6
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1179.9 861 66.3
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1176.4 855 65.3
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1174.8 861 66.1
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1174.5 851 65.9
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1169.1 869 64.9
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1169.1 846 67.1
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1168.3 854 65.1
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1166.4 854 65.1
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1165.6 847 66.1
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1165.2 856 65.9
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1164.8 854 64.8
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1164.1 857 65.0
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1162.5 855 64.8
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1159.4 851 65.8
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1156.7 886 62.8
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1154.8 850 65.6
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1149.8 888 63.0
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1149.4 869 64.2
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1148.3 849 65.7
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 0.0e+00 1148.3 851 65.0
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1140.9 852 65.5
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1130.9 753 70.1
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 0.0e+00 1120.1 763 70.1
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1119.4 844 64.3
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 0.0e+00 1119.0 856 63.3
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 0.0e+00 1117.8 846 63.8
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1112.4 865 62.3
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 0.0e+00 1106.7 859 62.9
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 0.0e+00 1097.4 778 65.4
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1097.0 775 66.3
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1096.3 775 66.3
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 0.0e+00 1094.0 848 62.9
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 0.0e+00 1092.0 845 63.2
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1088.9 775 66.2
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 0.0e+00 1086.6 725 69.9
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1086.2 781 64.9
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1086.2 875 61.0
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1081.6 773 65.2
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 5.2e-311 1070.8 781 65.4
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 2.5e-310 1068.5 839 61.5
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 7.5e-310 1067.0 857 61.3
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 1.1e-308 1063.1 782 64.6
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 1.1e-308 1063.1 780 64.7
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 1.1e-308 1063.1 851 61.9
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 3.1e-308 1061.6 856 60.4
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 7.7e-307 1057.0 716 69.0
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 1.7e-306 1055.8 784 64.2
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 5.0e-306 1054.3 808 63.1
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 1.7e-301 1039.3 825 59.0
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 1.0e-298 1030.0 909 56.7
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 5.0e-298 1027.7 735 66.0
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 9.5e-297 1023.5 782 63.3
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 2.3e-295 1018.8 769 60.7
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 8.6e-290 1000.3 841 57.3
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 1.7e-282 976.1 848 56.2
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 2.5e-281 972.2 802 59.9
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 1.5e-278 963.0 855 57.7
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 2.2e-261 906.0 652 66.7
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 1.4e-255 886.7 598 72.1
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 4.3e-249 865.1 779 55.6
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 1.7e-245 853.2 855 51.1
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 1.9e-244 849.7 796 54.0
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 2.5e-241 839.3 828 50.4
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 3.5e-235 818.9 848 48.1
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 4.2e-228 795.4 625 62.1
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 3.5e-227 792.3 789 49.4
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 5.1e-218 761.9 776 51.0
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 9.4e-212 741.1 662 57.6
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 3.1e-207 726.1 471 70.9
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 9.7e-201 704.5 431 75.2
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 4.7e-195 685.6 740 47.6
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 8.0e-195 684.9 434 71.9
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 8.8e-186 654.8 486 65.4
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 1.2e-182 644.4 504 62.5
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 3.0e-178 629.8 666 51.4
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 8.9e-178 628.2 585 54.4
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 9.8e-177 624.8 428 67.5
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 1.1e-164 584.7 895 38.5
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 1.1e-156 558.1 573 52.9
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 2.3e-149 533.9 777 41.8
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 1.9e-143 514.2 434 60.1
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 3.0e-141 506.9 406 61.6
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 9.6e-140 501.9 403 64.5
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 8.4e-136 488.8 433 61.2
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 2.1e-131 474.2 316 67.7
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 3.1e-130 470.3 399 64.7
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 5.1e-125 453.0 269 77.7
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 3.1e-122 443.7 333 62.5
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 9.1e-90 335.9 244 65.6
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 8.0e-78 296.2 821 29.7
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 3.0e-77 294.3 517 34.2
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 3.0e-69 267.7 202 62.9
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 3.0e-69 267.7 207 61.8
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 2.0e-60 238.4 167 65.9
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 3.1e-53 214.5 138 73.9
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 7.3e-47 193.4 101 82.2
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 7.5e-44 183.3 193 53.9
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 1.4e-42 179.1 110 77.3
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 1.5e-36 159.1 155 49.0
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 4.4e-28 131.0 97 64.9
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 8.4e-27 126.7 123 54.5
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 1.4e-26 125.9 86 68.6
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 2.4e-26 125.2 78 74.4
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 1.2e-20 106.3 84 60.7
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 1.5e-20 105.9 82 62.2
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 2.9e-19 101.7 84 57.1
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 7.1e-18 97.1 92 53.3
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 3.7e-14 84.7 97 43.3
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 4.8e-14 84.3 96 43.8
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 1.4e-13 82.8 46 80.4
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 3.1e-13 81.6 61 62.3
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 3.4e-12 78.2 59 62.7
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.3e-11 76.3 37 81.1
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 4.9e-11 74.3 76 50.0
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 1.1e-10 73.2 69 58.0
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 4.2e-10 71.2 44 70.5


User provided reference genes

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