Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G228300 Prunus persica HOM05D004390 ORTHO05D004950 8.4e-45 183.3 94 100.0
FAN07G0791 Fragaria x ananassa HOM05D004390 ORTHO05D004950 9.9e-38 159.8 92 85.9
FAN17G1207 Fragaria x ananassa HOM05D004390 ORTHO05D004950 9.9e-38 159.8 92 85.9
FAN22G0688 Fragaria x ananassa HOM05D004390 ORTHO05D004950 9.9e-38 159.8 92 85.9
FvH4_4g23930 Fragaria vesca HOM05D004390 ORTHO05D004950 1.3e-37 159.5 92 84.8
FAN12G2113 Fragaria x ananassa HOM05D006059 ORTHO05D004950 1.3e-37 159.5 92 84.8
CANSAT80G1060 Cannabis sativa HOM05D004390 ORTHO05D004950 8.4e-37 156.8 92 84.8
QL03p053718 Quercus lobata HOM05D004390 ORTHO05D004950 1.9e-36 155.6 93 84.9
MELO3C011874.2 Cucumis melo HOM05D004390 ORTHO05D004950 9.3e-36 153.3 94 79.8
Duzib248G1577 Durio zibethinus HOM05D004390 ORTHO05D004950 1.6e-35 152.5 94 80.9
Atru.chr11.2308 Acer truncatum HOM05D004390 ORTHO05D004950 2.7e-35 151.8 94 86.2
Ca_18042_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 3.5e-35 151.4 94 79.8
Manes.12G012800 Manihot esculenta HOM05D004390 ORTHO05D004950 4.6e-35 151.0 94 83.0
Eucgr.B03484 Eucalyptus grandis HOM05D004390 ORTHO05D004950 1.3e-34 149.4 95 83.2
CsaV3_5G030350 Cucumis sativus L. HOM05D004390 ORTHO05D004950 1.8e-34 149.1 94 76.6
Medtr8g080380 Medicago truncatula HOM05D004390 ORTHO05D004950 2.3e-34 148.7 94 77.7
Haze_10374 Corylus avellana HOM05D004390 ORTHO05D004950 3.0e-34 148.3 94 81.9
Gohir.D01G154700 Gossypium hirsutum HOM05D004390 ORTHO05D004950 3.0e-34 148.3 94 79.8
Gorai.002G191500 Gossypium raimondii HOM05D004390 ORTHO05D004950 3.0e-34 148.3 94 79.8
CSS0004094 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 3.9e-34 147.9 94 79.8
CSS0048605 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 3.9e-34 147.9 94 79.8
CiPaw.06G101400 Carya illinoinensis HOM05D004390 ORTHO05D004950 5.1e-34 147.5 92 83.7
Sed0024223 Sechium edule HOM05D004390 ORTHO05D004950 6.7e-34 147.1 94 76.6
Cfa009329 Carpinus fangiana HOM05D004390 ORTHO05D004950 8.7e-34 146.7 93 81.7
DCAR_007008 Daucus carota HOM05D004390 ORTHO05D004950 8.7e-34 146.7 92 78.3
Psat4g014960 Pisum sativum HOM05D004390 ORTHO05D004950 8.7e-34 146.7 94 77.7
QL12p006243 Quercus lobata HOM05D004390 ORTHO05D004950 1.5e-33 146.0 93 80.6
Cpa.g.sc34.218 Carica papaya HOM05D004390 ORTHO05D004950 1.9e-33 145.6 94 80.9
ClCG11G013760 Citrullus lanatus HOM05D004390 ORTHO05D004950 1.9e-33 145.6 95 76.8
TWI18G1082 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 1.9e-33 145.6 94 77.7
Gohir.A01G155400 Gossypium hirsutum HOM05D004390 ORTHO05D004950 2.5e-33 145.2 94 78.7
Psat5g095200 Pisum sativum HOM05D004390 ORTHO05D004950 2.5e-33 145.2 94 77.7
arahy.Tifrunner.gnm1.ann1.FA6GLZ Arachis hypogaea HOM05D004390 ORTHO05D004950 3.3e-33 144.8 94 78.7
Glyma.11G249600 Glycine max HOM05D004390 ORTHO05D004950 3.3e-33 144.8 94 74.5
Lsat_1_v5_gn_8_149361 Lactuca sativa HOM05D004390 ORTHO05D004950 3.3e-33 144.8 94 75.5
Lj4g0026719 Lotus japonicus HOM05D004390 ORTHO05D004950 3.3e-33 144.8 94 78.7
arahy.Tifrunner.gnm1.ann1.CM82MG Arachis hypogaea HOM05D004390 ORTHO05D004950 4.3e-33 144.4 94 78.7
arahy.Tifrunner.gnm1.ann1.L53BL2 Arachis hypogaea HOM05D004390 ORTHO05D004950 4.3e-33 144.4 92 77.2
Gorai.008G164900 Gossypium raimondii HOM05D004390 ORTHO05D004950 4.3e-33 144.4 93 78.5
PGR102G2095 Punica granatum HOM05D004390 ORTHO05D004950 7.4e-33 143.7 95 78.9
Gohir.A12G148600 Gossypium hirsutum HOM05D004390 ORTHO05D004950 9.6e-33 143.3 93 77.4
Thecc.02G210700 Theobroma cacao HOM05D004390 ORTHO05D004950 1.3e-32 142.9 94 76.6
Gohir.D12G152500 Gossypium hirsutum HOM05D004390 ORTHO05D004950 1.6e-32 142.5 94 77.7
Phvul.001G260900 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 2.1e-32 142.1 94 73.4
BcaNung00935 Brassica carinata HOM05D004390 ORTHO05D004950 2.8e-32 141.7 94 78.7
Phvul.002G174400 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 2.8e-32 141.7 94 75.5
Migut.E00025 Erythranthe guttata HOM05D004390 ORTHO05D004950 3.7e-32 141.4 94 71.3
Carub.0007s0202 Capsella rubella HOM05D004390 ORTHO05D004950 4.8e-32 141.0 94 78.7
ECA233G0624 Erigeron canadensis HOM05D004390 ORTHO05D004950 4.8e-32 141.0 94 72.3
ECA240G0924 Erigeron canadensis HOM05D004390 ORTHO05D004950 4.8e-32 141.0 94 72.3
Glyma.08G103600 Glycine max HOM05D004390 ORTHO05D004950 4.8e-32 141.0 94 73.4
Glyma.18G007600 Glycine max HOM05D004390 ORTHO05D004950 4.8e-32 141.0 94 74.5
Thhalv10027263m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 6.2e-32 140.6 94 77.7
THA.LOC104824895 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 6.2e-32 140.6 94 76.6
Duzib251G0716 Durio zibethinus HOM05D004390 ORTHO05D004950 8.1e-32 140.2 94 76.6
THA.LOC104824892 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 8.1e-32 140.2 94 75.5
THA.LOC104824896 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 8.1e-32 140.2 94 75.5
TWI75G0215 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 8.1e-32 140.2 94 74.5
GSVIVG01010448001 Vitis vinifera HOM05D004390 ORTHO05D004950 8.1e-32 140.2 93 76.3
Glyma.05G146700 Glycine max HOM05D004390 ORTHO05D004950 1.1e-31 139.8 94 73.4
AL7G12360 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 1.4e-31 139.4 94 77.7
Actinidia08077 Actinidia chinensis HOM05D001171 ORTHO05D001872 2.4e-31 138.7 94 78.7
Potri.008G175775 Populus trichocarpa HOM05D004390 ORTHO05D004950 2.4e-31 138.7 95 76.8
THA.LOC104824898 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 2.4e-31 138.7 94 75.5
TPR.G28271 Trifolium pratense HOM05D004390 ORTHO05D004950 2.4e-31 138.7 94 75.5
A01p00960 Brassica napus HOM05D004390 ORTHO05D004950 3.1e-31 138.3 94 76.6
BolC1t00106H Brassica oleracea HOM05D004390 ORTHO05D004950 3.1e-31 138.3 94 76.6
BraA01t00094Z Brassica rapa HOM05D004390 ORTHO05D004950 3.1e-31 138.3 94 76.6
HanXRQChr08g0207731 Helianthus annuus HOM05D004390 ORTHO05D004950 3.1e-31 138.3 92 71.7
Hma1.2p1_0065F.1_g035640 Hydrangea macrophylla HOM05D004390 ORTHO05D004950 3.1e-31 138.3 94 75.5
Sabra08G0134000 Salix brachista HOM05D004390 ORTHO05D004950 3.1e-31 138.3 95 75.8
Aqoxy5G03398 Aquilegia oxysepala HOM05D004390 ORTHO05D004950 4.0e-31 137.9 89 75.3
CARHR246620 Cardamine hirsuta HOM05D004390 ORTHO05D004950 4.0e-31 137.9 92 77.2
Nitab4.5_0000379g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 4.0e-31 137.9 94 74.5
Migut.K00715 Erythranthe guttata HOM05D004390 ORTHO05D004950 5.3e-31 137.5 94 71.3
Potri.010G059300 Populus trichocarpa HOM05D004390 ORTHO05D004950 5.3e-31 137.5 94 76.6
THA.LOC109116235 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 5.3e-31 137.5 79 81.0
TAR371G0820 Trochodendron aralioides HOM05D004390 ORTHO05D004950 5.3e-31 137.5 92 73.9
Cc11_g00910 Coffea canephora HOM05D004390 ORTHO05D004950 6.9e-31 137.1 94 73.4
Dinv14827 Davidia involucrata HOM05D001171 ORTHO05D001872 6.9e-31 137.1 94 75.5
Medtr3g085510 Medicago truncatula HOM05D004390 ORTHO05D004950 6.9e-31 137.1 94 75.5
TWI36G1003 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 6.9e-31 137.1 94 72.3
Actinidia20702 Actinidia chinensis HOM05D004390 ORTHO05D004950 9.0e-31 136.7 94 77.7
Nitab4.5_0000367g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 9.0e-31 136.7 94 73.4
Nn3g16498 Nelumbo nucifera HOM05D004390 ORTHO05D004950 1.2e-30 136.3 93 73.1
THA.LOC104824890 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 1.2e-30 136.3 94 73.4
Actinidia09657 Actinidia chinensis HOM05D004390 ORTHO05D004950 1.5e-30 136.0 94 76.6
CAN.G638.34 Capsicum annuum HOM05D004390 ORTHO05D004950 1.5e-30 136.0 94 75.5
COL.COLO4_20382 Corchorus olitorius HOM05D001171 ORTHO05D001872 1.5e-30 136.0 94 74.5
Ca_16468_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 2.0e-30 135.6 93 72.0
Peaxi162Scf00128g01124 Petunia axillaris HOM05D004390 ORTHO05D004950 2.6e-30 135.2 93 72.0
TAR622G0138 Trochodendron aralioides HOM05D004390 ORTHO05D004950 2.6e-30 135.2 92 71.7
Cc09_g06290 Coffea canephora HOM05D015856 ORTHO05D004950 4.5e-30 134.4 93 73.1
Sp7g35820 Schrenkiella parvula HOM05D004390 ORTHO05D004950 4.5e-30 134.4 94 75.5
AT4G40042 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 7.6e-30 133.7 79 81.0
Sc11g0000500 Simmondsia chinensis HOM05D004390 ORTHO05D004950 7.6e-30 133.7 93 66.7
Nn4g22350 Nelumbo nucifera HOM05D004390 ORTHO05D004950 9.9e-30 133.3 93 69.9
RcHm_v2.0_Chr4g0430591 Rosa chinensis HOM05D004390 ORTHO05D004950 9.9e-30 133.3 81 86.4
Duzib268G0993 Durio zibethinus HOM05D004390 ORTHO05D004950 1.7e-29 132.5 94 71.3
Lj7E465T0 Lonicera japonica HOM05D004390 ORTHO05D004950 1.7e-29 132.5 94 73.4
Hund25458 Selenicereus undatus HOM05D004390 ORTHO05D004950 1.7e-29 132.5 93 69.9
EL10Ac6g13484 Beta vulgaris HOM05D004390 ORTHO05D004950 2.9e-29 131.7 93 69.9
ClCG09G006830 Citrullus lanatus HOM05D004390 ORTHO05D004950 4.9e-29 131.0 94 69.1
Aa31LG7G15420 Aethionema arabicum HOM05D004390 ORTHO05D004950 6.4e-29 130.6 94 72.3
AT2G22425 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 6.4e-29 130.6 94 73.4
Aa31LG7G14400 Aethionema arabicum HOM05D004390 ORTHO05D004950 8.4e-29 130.2 94 71.3
AUR62024125 Chenopodium quinoa HOM05D004390 ORTHO05D004950 8.4e-29 130.2 80 75.0
CARHR113610 Cardamine hirsuta HOM05D004390 ORTHO05D004950 1.1e-28 129.8 94 72.3
Nitab4.5_0000592g0450 Nicotiana tabacum HOM05D004390 ORTHO05D004950 1.1e-28 129.8 94 72.3
SpUn0131_0010 Schrenkiella parvula HOM05D004390 ORTHO05D004950 1.1e-28 129.8 94 72.3
Nitab4.5_0002210g0100 Nicotiana tabacum HOM05D004390 ORTHO05D004950 1.4e-28 129.4 94 71.3
Aa31LG6G15170 Aethionema arabicum HOM05D004390 ORTHO05D004950 1.9e-28 129.0 94 71.3
CSS0024228 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 1.9e-28 129.0 94 74.5
Rhsim12G0027700 Rhododendron simsii HOM05D004390 ORTHO05D004950 1.9e-28 129.0 79 75.9
Sopen03g001750 Solanum pennellii HOM05D004390 ORTHO05D004950 1.9e-28 129.0 94 70.2
TAR629G1658 Trochodendron aralioides HOM05D004390 ORTHO05D004950 1.9e-28 129.0 92 69.6
Rhsim10G0039200 Rhododendron simsii HOM05D004390 ORTHO05D004950 4.2e-28 127.9 92 71.7
Ah.02g130970 Amaranthus hybridus HOM05D004390 ORTHO05D004950 5.5e-28 127.5 93 67.7
AL4G11930 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 5.5e-28 127.5 94 72.3
BraA09t41150Z Brassica rapa HOM05D004390 ORTHO05D004950 5.5e-28 127.5 94 70.2
Oeu058917.1 Olea europaea HOM05D004390 ORTHO05D004950 5.5e-28 127.5 94 67.0
C08p40770 Brassica napus HOM05D004390 ORTHO05D004950 7.1e-28 127.1 94 70.2
Carub.0004s0159 Capsella rubella HOM05D004390 ORTHO05D004950 7.1e-28 127.1 94 72.3
Lsat_1_v5_gn_3_29821 Lactuca sativa HOM05D004390 ORTHO05D004950 7.1e-28 127.1 94 70.2
MBI11_g07456_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 7.1e-28 127.1 93 69.9
A09p57580 Brassica napus HOM05D004390 ORTHO05D004950 1.2e-27 126.3 94 68.1
Thhalv10000378m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 1.2e-27 126.3 94 72.3
MD13G1117200 Malus domestica HOM05D004390 ORTHO05D004950 2.1e-27 125.6 84 82.1
BcaC07g41074 Brassica carinata HOM05D004390 ORTHO05D004950 6.0e-27 124.0 94 69.1
BolC8t51641H Brassica oleracea HOM05D004390 ORTHO05D004950 6.0e-27 124.0 94 69.1
Lalb_Chr12g0206281 Lupinus albus HOM05D004390 ORTHO05D004950 6.0e-27 124.0 82 76.8
HPP92_024163 Vanilla planifolia HOM05D000064 ORTHO05D000281 1.3e-26 122.9 93 65.6
HPP92_024177 Vanilla planifolia HOM05D004390 ORTHO05D004950 1.3e-26 122.9 93 65.6
Thhalv10021836m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 1.8e-26 122.5 92 67.4
BcaB08g35066 Brassica carinata HOM05D004390 ORTHO05D004950 2.3e-26 122.1 94 68.1
Os12g0438900 Oryza sativa ssp. japonica HOM05D004390 ORTHO05D004950 2.3e-26 122.1 94 66.0
DCAR_031195 Daucus carota HOM05D001171 ORTHO05D006126 3.0e-26 121.7 94 63.8
Zm00001eb052740 Zea mays HOM05D004390 ORTHO05D004950 3.0e-26 121.7 94 66.0
Zm00001eb218300 Zea mays HOM05D004390 ORTHO05D004950 3.9e-26 121.3 94 64.9
Lalb_Chr07g0187411 Lupinus albus HOM05D004390 ORTHO05D004950 6.7e-26 120.6 82 73.2
CARHR089330 Cardamine hirsuta HOM05D004390 ORTHO05D004950 1.9e-25 119.0 79 68.4
PSO478G0183 Papaver somniferum HOM05D004390 ORTHO05D004950 1.9e-25 119.0 92 64.1
PSO063G2970 Papaver somniferum HOM05D004390 ORTHO05D004950 2.5e-25 118.6 92 64.1
MBI13_g26147_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 3.3e-25 118.2 93 65.6
PSO017G1102 Papaver somniferum HOM05D004390 ORTHO05D004950 3.3e-25 118.2 92 63.0
PSO782G4737 Papaver somniferum HOM05D004390 ORTHO05D004950 3.3e-25 118.2 92 63.0
Ah.03g136230 Amaranthus hybridus HOM05D001171 ORTHO05D006126 8.2e-24 113.6 93 63.4
Carub.0003s1416 Capsella rubella HOM05D004390 ORTHO05D004950 1.1e-23 113.2 89 60.7
CiPaw.05G111600 Carya illinoinensis HOM05D004390 ORTHO05D004950 5.3e-23 110.9 80 72.5
SEGI_16803 Sequoiadendron giganteum HOM05D004390 ORTHO05D004950 2.0e-22 109.0 101 58.4
MBI05_g44034_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 3.4e-22 108.2 93 62.4
ATR0561G166 Amborella trichopoda HOM05D004390 ORTHO05D004950 4.5e-22 107.8 92 59.8
SMO364G0480 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 5.8e-22 107.5 93 59.1
Solyc03g005740.3 Solanum lycopersicum HOM05D004390 ORTHO05D004950 2.9e-21 105.1 82 67.1
ATR1098G064 Amborella trichopoda HOM05D004390 ORTHO05D004950 8.4e-21 103.6 96 59.4
TPR.G10940 Trifolium pratense HOM05D004390 ORTHO05D004950 1.1e-20 103.2 65 78.5
MBI07_g16243_MAGBIO Magnolia biondii HOM05D002351 ORTHO05D004950 2.7e-19 98.6 82 63.4
Pp3c4_12150 Physcomitrium patens HOM05D004390 ORTHO05D004950 3.5e-19 98.2 93 54.8
Pp3c10_14440 Physcomitrium patens HOM05D004390 ORTHO05D004950 7.4e-17 90.5 93 52.7
Sp3g12740 Schrenkiella parvula HOM05D004390 ORTHO05D004950 1.3e-16 89.7 61 68.9
Manes.13G018500 Manihot esculenta HOM05D004390 ORTHO05D004950 6.3e-16 87.4 72 62.5
Mapoly0041s0086 Marchantia polymorpha HOM05D004390 ORTHO05D004950 6.3e-16 87.4 93 52.7
MBI07_g34630_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 2.2e-13 79.0 62 56.5
CBR_g48133 Chara braunii HOM05D004390 ORTHO05D004950 6.5e-13 77.4 95 43.2
Nn1g04852 Nelumbo nucifera HOM05D004390 ORTHO05D004950 8.5e-13 77.0 52 69.2
Nn4g24822 Nelumbo nucifera HOM05D002155 ORTHO05D004950 8.5e-13 77.0 52 69.2
PRCOL_00005433 Prasinoderma coloniale HOM05D004390 ORTHO05D004950 4.2e-12 74.7 71 43.7
MCO16G111 Micromonas commoda HOM05D004390 ORTHO05D004950 7.2e-12 73.9 95 37.9
Lalb_Chr22g0358881 Lupinus albus HOM05D004390 ORTHO05D004950 6.1e-11 70.9 38 81.6
SMO145G0172 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 1.0e-10 70.1 85 41.2
Pp3c3_460 Physcomitrium patens HOM05D004390 ORTHO05D004950 2.8e-08 62.0 73 35.6
SEGI_01546 Sequoiadendron giganteum HOM05D007557 ORTHO05D009573 1.8e-07 59.3 69 43.5
SMO197G0059 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 2.0e-06 55.8 69 40.6


User provided reference genes

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